ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 32 1.7
2NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precur... 30 5.1
3BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3) 30 8.7
4WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY ... 30 8.7
5CR015_HUMAN (Q96N68) Protein C18orf15 30 8.7

>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 547  TKTSRSPLSQSLSQNQR*FQSRWSPRNPHALLAKTPPQGNRLGPVVALAAG 395
            T  S S L++SLS  +       SP + H+L  ++PPQG R+ P    + G
Sbjct: 1182 TSRSLSSLNRSLSSGE---SGPGSPTHSHSLSPRSPPQGYRVAPDAVHSVG 1229



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>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier
           family 24 member 4)
          Length = 605

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +1

Query: 397 PPLERPPDP----ADFLAGVSLPTARGD 468
           PP   PP+P    ADFL+  S+P ARGD
Sbjct: 379 PPQPPPPEPEPVEADFLSPFSVPEARGD 406



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>BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3)|
          Length = 1187

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 340  PLSRKELPGRSRRTISLVYDQRVYIYIYPAETCHKGVAC 224
            PL R +      RT+  VYD+  Y  + PAE C +  AC
Sbjct: 1061 PLVRSQRTQVKTRTLHPVYDELFYFSV-PAEACRRRAAC 1098



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>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding|
           protein 7)
          Length = 353

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = -2

Query: 652 VNTRSRESSRLQVITRLNSSRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSP 473
           V    ++     V+T+  + ++      FR +CP+    R PLS + + NQ   ++  S 
Sbjct: 115 VEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSS 174

Query: 472 RNPHALLAKTPPQGNRLGPVVALAA 398
            +P  +LA   P      P   ++A
Sbjct: 175 SSP-PMLANGAPSTINFAPSPPVSA 198



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>CR015_HUMAN (Q96N68) Protein C18orf15|
          Length = 181

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 247 TCHKGVACSVHFQTLIQVCACASIFSCXLGDCCIVV 140
           T  +G  C VH Q+L  VC CA +  C     C+ V
Sbjct: 110 TWARGPCCPVHPQSLTVVCMCACMCVCVHVCACVYV 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,258,662
Number of Sequences: 219361
Number of extensions: 1825365
Number of successful extensions: 4798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4798
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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