Clone Name | rbasd16n22 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocyte growth factor-regulated tyrosine kinase substrate-like protein (OSJNBa0035H01.5), mRNA Length = 1554 Score = 170 bits (86), Expect = 4e-39 Identities = 167/194 (86%) Strand = Plus / Minus Query: 475 ggctccaccgtgactggaatcatcgctggttctggctcaggctctgcgacaatgggctcc 534 |||||||| |||||||||||||| ||||| |||| |||||||||||| |||| || ||| Sbjct: 1084 ggctccacggtgactggaatcatggctggctctgcctcaggctctgcaacaacaggttcc 1025 Query: 535 ttgaggtcttcgtacttggacagaactttctgaagttcatcgtggatgctcagtgcctcg 594 ||||| |||| |||||||| ||||| |||| |||||||||||||| |||| |||||| Sbjct: 1024 ttgagttctttatacttggagagaaccttctcaagttcatcgtggacactcaatgcctca 965 Query: 595 aagagttgagcctcgttatcacctgcagtctcgacgattctctggatcgtgtgttgacac 654 ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||| | |||||| Sbjct: 964 aagagctgagcctcgttgtcaccagccgtctcaatgattctctggatggtgcgctgacac 905 Query: 655 tgttggcattgctg 668 |||||||||||||| Sbjct: 904 tgttggcattgctg 891 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 1210 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 1151 Query: 388 aagtcatc 395 || ||||| Sbjct: 1150 aactcatc 1143
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 170 bits (86), Expect = 4e-39 Identities = 167/194 (86%) Strand = Plus / Minus Query: 475 ggctccaccgtgactggaatcatcgctggttctggctcaggctctgcgacaatgggctcc 534 |||||||| |||||||||||||| ||||| |||| |||||||||||| |||| || ||| Sbjct: 49861 ggctccacggtgactggaatcatggctggctctgcctcaggctctgcaacaacaggttcc 49802 Query: 535 ttgaggtcttcgtacttggacagaactttctgaagttcatcgtggatgctcagtgcctcg 594 ||||| |||| |||||||| ||||| |||| |||||||||||||| |||| |||||| Sbjct: 49801 ttgagttctttatacttggagagaaccttctcaagttcatcgtggacactcaatgcctca 49742 Query: 595 aagagttgagcctcgttatcacctgcagtctcgacgattctctggatcgtgtgttgacac 654 ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||| | |||||| Sbjct: 49741 aagagctgagcctcgttgtcaccagccgtctcaatgattctctggatggtgcgctgacac 49682 Query: 655 tgttggcattgctg 668 |||||||||||||| Sbjct: 49681 tgttggcattgctg 49668 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 49987 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 49928 Query: 388 aagtcatc 395 || ||||| Sbjct: 49927 aactcatc 49920
>emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) mRNA for TOM2 protein Length = 1606 Score = 170 bits (86), Expect = 4e-39 Identities = 167/194 (86%) Strand = Plus / Minus Query: 475 ggctccaccgtgactggaatcatcgctggttctggctcaggctctgcgacaatgggctcc 534 |||||||| |||||||||||||| ||||| |||| |||||||||||| |||| || ||| Sbjct: 1100 ggctccacggtgactggaatcatggctggctctgcctcaggctctgcaacaacaggttcc 1041 Query: 535 ttgaggtcttcgtacttggacagaactttctgaagttcatcgtggatgctcagtgcctcg 594 ||||| |||| |||||||| ||||| |||| |||||||||||||| |||| |||||| Sbjct: 1040 ttgagttctttatacttggagagaaccttctcaagttcatcgtggacactcaatgcctca 981 Query: 595 aagagttgagcctcgttatcacctgcagtctcgacgattctctggatcgtgtgttgacac 654 ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||| | |||||| Sbjct: 980 aagagctgagcctcgttgtcaccagccgtctcaatgattctctggatggtgcgctgacac 921 Query: 655 tgttggcattgctg 668 |||||||||||||| Sbjct: 920 tgttggcattgctg 907 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 1226 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 1167 Query: 388 aagtcatc 395 || ||||| Sbjct: 1166 aactcatc 1159
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 170 bits (86), Expect = 4e-39 Identities = 167/194 (86%) Strand = Plus / Minus Query: 475 ggctccaccgtgactggaatcatcgctggttctggctcaggctctgcgacaatgggctcc 534 |||||||| |||||||||||||| ||||| |||| |||||||||||| |||| || ||| Sbjct: 22534143 ggctccacggtgactggaatcatggctggctctgcctcaggctctgcaacaacaggttcc 22534084 Query: 535 ttgaggtcttcgtacttggacagaactttctgaagttcatcgtggatgctcagtgcctcg 594 ||||| |||| |||||||| ||||| |||| |||||||||||||| |||| |||||| Sbjct: 22534083 ttgagttctttatacttggagagaaccttctcaagttcatcgtggacactcaatgcctca 22534024 Query: 595 aagagttgagcctcgttatcacctgcagtctcgacgattctctggatcgtgtgttgacac 654 ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||| | |||||| Sbjct: 22534023 aagagctgagcctcgttgtcaccagccgtctcaatgattctctggatggtgcgctgacac 22533964 Query: 655 tgttggcattgctg 668 |||||||||||||| Sbjct: 22533963 tgttggcattgctg 22533950 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 22534269 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 22534210 Query: 388 aagtcatc 395 || ||||| Sbjct: 22534209 aactcatc 22534202
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 170 bits (86), Expect = 4e-39 Identities = 167/194 (86%) Strand = Plus / Minus Query: 475 ggctccaccgtgactggaatcatcgctggttctggctcaggctctgcgacaatgggctcc 534 |||||||| |||||||||||||| ||||| |||| |||||||||||| |||| || ||| Sbjct: 22546611 ggctccacggtgactggaatcatggctggctctgcctcaggctctgcaacaacaggttcc 22546552 Query: 535 ttgaggtcttcgtacttggacagaactttctgaagttcatcgtggatgctcagtgcctcg 594 ||||| |||| |||||||| ||||| |||| |||||||||||||| |||| |||||| Sbjct: 22546551 ttgagttctttatacttggagagaaccttctcaagttcatcgtggacactcaatgcctca 22546492 Query: 595 aagagttgagcctcgttatcacctgcagtctcgacgattctctggatcgtgtgttgacac 654 ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||| | |||||| Sbjct: 22546491 aagagctgagcctcgttgtcaccagccgtctcaatgattctctggatggtgcgctgacac 22546432 Query: 655 tgttggcattgctg 668 |||||||||||||| Sbjct: 22546431 tgttggcattgctg 22546418 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 22546737 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 22546678 Query: 388 aagtcatc 395 || ||||| Sbjct: 22546677 aactcatc 22546670
>dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126G20, full insert sequence Length = 1169 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 328 tcctgctgagaggaggtgccggctttcttaccaaagatcatgtcatcaagatcctgaagc 387 ||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||| Sbjct: 813 tcctgctgagatgaggtgccgcccttcttgccaaatatcatgtcgtcaagatcctgaagc 754 Query: 388 aagtcatc 395 || ||||| Sbjct: 753 aactcatc 746
>gb|BT013889.1| Lycopersicon esculentum clone 132874R, mRNA sequence Length = 1537 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 tcctcgggctccaccgtgactggaatcatcgctggttctggctc 512 |||||||||||||| | |||||||||||| || ||||||||||| Sbjct: 1143 tcctcgggctccactgcgactggaatcatggcaggttctggctc 1100 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 349 gctttcttaccaaagatcatgtcatcaagatc 380 ||||| |||||||| ||||| ||||||||||| Sbjct: 1269 gcttttttaccaaaaatcatctcatcaagatc 1238
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ataatttggcacgcataacaaccaca 92 ||||||||| |||||||||||||||| Sbjct: 2874 ataatttggaacgcataacaaccaca 2849
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ataatttggcacgcataacaaccaca 92 ||||||||| |||||||||||||||| Sbjct: 147112 ataatttggaacgcataacaaccaca 147087
>ref|XM_744404.1| Aspergillus fumigatus Af293 Ras GTPase activating protein (Afu2g03640) partial mRNA Length = 5253 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 500 ctggttctggctcaggctctgc 521 |||||||||||||||||||||| Sbjct: 1393 ctggttctggctcaggctctgc 1372
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ataatttggcacgcataacaaccaca 92 ||||||||| |||||||||||||||| Sbjct: 28992819 ataatttggaacgcataacaaccaca 28992794
>ref|XM_535458.2| PREDICTED: Canis familiaris similar to beta-2-microglobulin precursor, transcript variant 2 (LOC478284), mRNA Length = 1116 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 caaatttccaataatttggca 77 ||||||||||||||||||||| Sbjct: 980 caaatttccaataatttggca 960
>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE Length = 123473 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 caagatcctgaagcaagtcat 394 ||||||||||||||||||||| Sbjct: 60974 caagatcctgaagcaagtcat 60994
>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence Length = 208469 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 ttcctcgggctccaccgtgactgga 492 ||||||||||||||||||| ||||| Sbjct: 84135 ttcctcgggctccaccgtggctgga 84159
>gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, complete sequence Length = 174793 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 ttcctcgggctccaccgtgactgga 492 ||||||||||||||||||| ||||| Sbjct: 20370 ttcctcgggctccaccgtggctgga 20394
>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete sequence Length = 229346 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 499 gctggttctggctcaggctct 519 ||||||||||||||||||||| Sbjct: 109405 gctggttctggctcaggctct 109385
>gb|U82624.1|MMU82624 Mus musculus amyloid precursor protein (APP) gene, partial cds, exons 16 and 17 Length = 7097 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 499 gctggttctggctcaggctct 519 ||||||||||||||||||||| Sbjct: 97 gctggttctggctcaggctct 117
>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete sequence Length = 122162 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 taccaaagatcatgtcatcaagat 379 ||||||||||||||| |||||||| Sbjct: 28937 taccaaagatcatgtaatcaagat 28960
>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence Length = 170885 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 acaatgggctccttgaggtc 542 |||||||||||||||||||| Sbjct: 94171 acaatgggctccttgaggtc 94152
>emb|Z81130.1|CET23G11 Caenorhabditis elegans Cosmid T23G11, complete sequence Length = 24762 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tccaaatttccaataatttggcac 78 ||||||||||||| |||||||||| Sbjct: 14038 tccaaatttccaaaaatttggcac 14015
>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gcattccaaatttccaataa 70 |||||||||||||||||||| Sbjct: 85028 gcattccaaatttccaataa 85009
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ttaccaaagatcatgtcatc 374 |||||||||||||||||||| Sbjct: 860613 ttaccaaagatcatgtcatc 860594
>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence Length = 198253 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tggacagaactttctgaagt 570 |||||||||||||||||||| Sbjct: 93726 tggacagaactttctgaagt 93707
>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence Length = 192545 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tggacagaactttctgaagt 570 |||||||||||||||||||| Sbjct: 59255 tggacagaactttctgaagt 59236
>dbj|AK114259.1| Ciona intestinalis cDNA, clone:cicl050a23, full insert sequence Length = 1787 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 ggaatcatcgctggttctgg 509 |||||||||||||||||||| Sbjct: 600 ggaatcatcgctggttctgg 619
>gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, complete sequence Length = 218935 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 acaatgggctccttgaggtc 542 |||||||||||||||||||| Sbjct: 164 acaatgggctccttgaggtc 145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,640,793 Number of Sequences: 3902068 Number of extensions: 5640793 Number of successful extensions: 89987 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89859 Number of HSP's gapped (non-prelim): 128 length of query: 671 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 648 effective length of database: 17,143,297,704 effective search space: 11108856912192 effective search space used: 11108856912192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)