ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493864.1| Oryza sativa (japonica cultivar-group), predic... 280 3e-72
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 280 3e-72
3dbj|AK067481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 3e-72
4gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome... 280 3e-72
5gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome... 280 3e-72
6gb|AY104997.1| Zea mays PCO079200 mRNA sequence 276 5e-71
7dbj|AK059567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 7e-58
8gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis tha... 60 6e-06
9emb|X68078.1|NTRPCL28 N.tabacum mRNA for chloroplast ribosomal p... 52 0.001
10gb|AY212800.1| Uncultured bacterium clone XIVA3 Uvs061 (uvs061),... 48 0.021
11gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosom... 48 0.021
12gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome... 48 0.021
13gb|AY190738.1| Pagrus major 40S ribosomal protein S18 mRNA, part... 44 0.33
14gb|BC079336.1| Rattus norvegicus similar to hypothetical protein... 44 0.33
15ref|NM_001014191.1| Rattus norvegicus similar to hypothetical pr... 44 0.33
16ref|XM_482939.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
17gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 42 1.3
18gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, com... 42 1.3
19gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome... 42 1.3
20emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 o... 42 1.3
21gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, comp... 42 1.3
22emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 42 1.3
23dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 1.3
24gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.3
25gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.3
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Can... 42 1.3
29gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 42 1.3
30gb|AY957387.1| Pseudomonas stutzeri DnrE (dnrE) gene, complete c... 42 1.3
31dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.3
33dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.3
34dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
35emb|Y00142.1|SLXP55 Streptomyces lividans DNA for xp55 protein a... 42 1.3
36gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete... 42 1.3
37emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chr... 42 1.3
38gb|AC173480.1| Mus musculus BAC clone RP23-422D12 from chromosom... 42 1.3
39dbj|AP002075.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 42 1.3
40ref|NM_128905.2| Arabidopsis thaliana structural constituent of ... 40 5.2
41gb|AC121142.12| Mus musculus chromosome 10, clone RP23-479G23, c... 40 5.2
42gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosom... 40 5.2
43ref|XM_421335.1| PREDICTED: Gallus gallus similar to KIAA1409 (L... 40 5.2
44gb|AC116527.18| Mus musculus chromosome 16, clone RP24-354B8, co... 40 5.2
45ref|NM_001007254.1| Homo sapiens ATPase, H+ transporting, lysoso... 40 5.2
46ref|NM_001695.3| Homo sapiens ATPase, H+ transporting, lysosomal... 40 5.2
47gb|AC140201.3| Mus musculus BAC clone RP23-267F15 from chromosom... 40 5.2
48gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.2
49gb|AC068663.5| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 5.2
50emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 5.2
51gb|AC124259.6| Homo sapiens chromosome 11, clone RP11-21N2, comp... 40 5.2
52gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosom... 40 5.2
53gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome... 40 5.2
54gb|AC116651.6| Homo sapiens BAC clone RP11-799M12 from 4, comple... 40 5.2
55gb|AC112681.12| Mus musculus chromosome 16, clone RP23-272P19, c... 40 5.2
56gb|AC113541.10| Mus musculus chromosome 5, clone RP23-185N2, com... 40 5.2
57gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete ... 40 5.2
58gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 40 5.2
59emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chr... 40 5.2
60ref|NG_004051.1| Mus musculus immunoglobulin lambda chain comple... 40 5.2
61emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.2
62emb|AL596163.1| Listeria innocua Clip11262 complete genome, segm... 40 5.2
63gb|AY114618.1| Arabidopsis thaliana putative chloroplast 50S rib... 40 5.2
64dbj|AK090702.1| Homo sapiens cDNA FLJ33383 fis, clone BRACE2006514 40 5.2
65gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete s... 40 5.2
66gb|AC108683.2| Homo sapiens Xp BAC RP11-539J11 (Roswell Park Can... 40 5.2
67gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ... 40 5.2
68gb|AC116545.1| Homo sapiens X BAC CTD-2009P21 (CalTech Human BAC... 40 5.2
69gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, com... 40 5.2
70gb|AY072373.1| Arabidopsis thaliana putative chloroplast 50S rib... 40 5.2
71gb|AC158985.2| Mus musculus BAC clone RP23-277H13 from chromosom... 40 5.2
72gb|AC090058.21| Homo sapiens 12 BAC RP11-112N23 (Roswell Park Ca... 40 5.2
73emb|BX817300.1|CNS0ACFR Arabidopsis thaliana Full-length cDNA Co... 40 5.2
74emb|BX819519.1|CNS0A8T8 Arabidopsis thaliana Full-length cDNA Co... 40 5.2
75gb|AC007500.7| Homo sapiens chromosome 16 clone RP11-545E2, comp... 40 5.2
76gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21... 40 5.2
77dbj|AB110611.1| Pseudomonas sp. MT-1 nar gene cluster (orf1, orf... 40 5.2
78gb|AY087094.1| Arabidopsis thaliana clone 31633 mRNA, complete s... 40 5.2
79ref|XM_218387.3| PREDICTED: Rattus norvegicus similar to F-box o... 40 5.2
80dbj|BS000217.1| Pan troglodytes chromosome 22 clone:PTB-004I03, ... 40 5.2
81emb|BX648079.1|HSM808225 Homo sapiens mRNA; cDNA DKFZp686N08183 ... 40 5.2
82dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.2
83gb|AF363578.1| Homo sapiens ATPase H+ transporting lysosomal pro... 40 5.2
84gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 ... 40 5.2
85gb|AY105324.1| Zea mays PCO143177 mRNA sequence 40 5.2
86dbj|AP000843.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.2
87dbj|AP001699.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.2
88gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.2
89emb|CR974566.12| Pig DNA sequence from clone CH242-112C22 on chr... 40 5.2
90emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on ch... 40 5.2
91gb|AC153953.2| Mus musculus 10 BAC RP24-394B11 (Roswell Park Can... 40 5.2
92dbj|AP003550.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.2
93dbj|AP001605.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 5.2
94dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.2 
>ref|XM_493864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 267

 Score =  280 bits (141), Expect = 3e-72
 Identities = 207/229 (90%)
 Strand = Plus / Minus

                                                                       
Query: 158 atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 265 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 206

                                                                       
Query: 218 ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
           | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 205 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 146

                                                                       
Query: 278 acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaagg 337
           |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 145 acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtggtttgagaagg 86

                                                            
Query: 338 acaccttgttggcccggttcgtcttcttctccagaaaggggcagatccg 386
           |||||||||| |||| ||| |||||||| |||   |||||||| |||||
Sbjct: 85  acaccttgttcgccctgttggtcttcttgtccgtgaaggggcatatccg 37
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
             complete sequence
          Length = 29737217

 Score =  280 bits (141), Expect = 3e-72
 Identities = 207/229 (90%)
 Strand = Plus / Plus

                                                                         
Query: 158   atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
             |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 66350 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 66409

                                                                         
Query: 218   ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
             | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 66410 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 66469

                                                                         
Query: 278   acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaagg 337
             |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 66470 acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtggtttgagaagg 66529

                                                              
Query: 338   acaccttgttggcccggttcgtcttcttctccagaaaggggcagatccg 386
             |||||||||| |||| ||| |||||||| |||   |||||||| |||||
Sbjct: 66530 acaccttgttcgccctgttggtcttcttgtccgtgaaggggcatatccg 66578
to top
>dbj|AK067481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107H14, full
           insert sequence
          Length = 796

 Score =  280 bits (141), Expect = 3e-72
 Identities = 207/229 (90%)
 Strand = Plus / Minus

                                                                       
Query: 158 atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 479 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 420

                                                                       
Query: 218 ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
           | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 419 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 360

                                                                       
Query: 278 acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaagg 337
           |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 359 acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtggtttgagaagg 300

                                                            
Query: 338 acaccttgttggcccggttcgtcttcttctccagaaaggggcagatccg 386
           |||||||||| |||| ||| |||||||| |||   |||||||| |||||
Sbjct: 299 acaccttgttcgccctgttggtcttcttgtccgtgaaggggcatatccg 251
to top
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10,
             complete sequence
          Length = 156772

 Score =  280 bits (141), Expect = 3e-72
 Identities = 207/229 (90%)
 Strand = Plus / Plus

                                                                         
Query: 158   atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
             |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 66350 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 66409

                                                                         
Query: 218   ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
             | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 66410 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 66469

                                                                         
Query: 278   acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaagg 337
             |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 66470 acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtggtttgagaagg 66529

                                                              
Query: 338   acaccttgttggcccggttcgtcttcttctccagaaaggggcagatccg 386
             |||||||||| |||| ||| |||||||| |||   |||||||| |||||
Sbjct: 66530 acaccttgttcgccctgttggtcttcttgtccgtgaaggggcatatccg 66578
to top
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0098I11, complete sequence
          Length = 122970

 Score =  280 bits (141), Expect = 3e-72
 Identities = 207/229 (90%)
 Strand = Plus / Plus

                                                                         
Query: 158   atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
             |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 75737 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 75796

                                                                         
Query: 218   ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
             | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 75797 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 75856

                                                                         
Query: 278   acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaagg 337
             |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 75857 acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtggtttgagaagg 75916

                                                              
Query: 338   acaccttgttggcccggttcgtcttcttctccagaaaggggcagatccg 386
             |||||||||| |||| ||| |||||||| |||   |||||||| |||||
Sbjct: 75917 acaccttgttcgccctgttggtcttcttgtccgtgaaggggcatatccg 75965
to top
>gb|AY104997.1| Zea mays PCO079200 mRNA sequence
          Length = 593

 Score =  276 bits (139), Expect = 5e-71
 Identities = 193/211 (91%)
 Strand = Plus / Minus

                                                                       
Query: 155 ctcatttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttct 214
           |||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 479 ctcacttcttgttgaggtcgatgccggccttgcgcgcgacggcgtcgaggccgtgcttct 420

                                                                       
Query: 215 cgattgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctccc 274
           |||| |||||||||||||||||||| || |  ||||||||| ||||||| ||||||||||
Sbjct: 419 cgatggtcttgagggccttggtggaaaggcgcagcttgacgaagcgcttgccggcctccc 360

                                                                       
Query: 275 accacagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggaga 334
           |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
Sbjct: 359 accacagcttcttgtactgcaggttcacgaactgctgcttcttcgtcttgtggttggaaa 300

                                          
Query: 335 aggacaccttgttggcccggttcgtcttctt 365
           | ||||||||||| |||||||||||||||||
Sbjct: 299 acgacaccttgttcgcccggttcgtcttctt 269
to top
>dbj|AK059567.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H10, full
           insert sequence
          Length = 487

 Score =  232 bits (117), Expect = 7e-58
 Identities = 156/169 (92%)
 Strand = Plus / Minus

                                                                       
Query: 158 atttcttgttgaggtcgatgccggccttcttggcgacggcgtcgaggccgtgcttctcga 217
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 169 atttcttgttgaggtcgatgccggcctttttggcgacggcgtcgaggccatgcttctcga 110

                                                                       
Query: 218 ttgtcttgagggccttggtggagagcctgagcttgacgtagcgctttccggcctcccacc 277
           | ||||||||||| ||||||||||| |  ||||||||| ||||||| ||  |||||||||
Sbjct: 109 tggtcttgagggctttggtggagagacgcagcttgacgaagcgcttgccttcctcccacc 50

                                                            
Query: 278 acagcttcttgtactgcaggttcacaaattgctgcttcttggtcttgtg 326
           |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 49  acagcttcttgtactgcaggttcacaaactgctgcttcttcgtcttgtg 1
to top
>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 107527

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 286   ttgtactgcaggttcacaaattgctgcttcttggtcttgtggttggagaaggacaccttg 345
             |||||||||| ||| || ||||||  |||||||||||||||||| ||||| ||||| |||
Sbjct: 22755 ttgtactgcaagttgacgaattgcaacttcttggtcttgtggttagagaatgacactttg 22696

               
Query: 346   tt 347
             ||
Sbjct: 22695 tt 22694
to top
>emb|X68078.1|NTRPCL28 N.tabacum mRNA for chloroplast ribosomal protein CL28
          Length = 671

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                       
Query: 253 acgtagcgctttccggcctcccaccacagcttcttgtactgcaggttcacaaattgctgc 312
           ||||||||||| || ||||||||||| |   ||||||| || ||||| |||||||||  |
Sbjct: 415 acgtagcgcttgcctgcctcccaccaaattctcttgtattgaaggtttacaaattgcaac 356

                                                                 
Query: 313 ttcttggtcttgtggttggagaaggacaccttgttggcccggttcgtcttcttc 366
           || || ||||||||||| |||   || |||||||| |||| ||| | |||||||
Sbjct: 355 ttttttgtcttgtggtttgagtgagagaccttgtttgccctgttggacttcttc 302
to top
>gb|AY212800.1| Uncultured bacterium clone XIVA3 Uvs061 (uvs061), Uvs062 (uvs062),
             Uvs063 (uvs063), Uvs064 (uvs064), Uvs065 (uvs065), Uvs066
             (uvs066), Uvs067 (uvs067), Uvs068 (uvs068), Uvs069, ActP
             (actP), AguC (aguC), Uvs072 (uvs072), AguD (aguD), AguE
             (aguE), Uvs075 (uvs075), Uvs076 (uvs076), Uvs077 (uvs077),
             Uvs078 (uvs078), Uvs079 (uvs079), Uvs080 (uvs080), AguF
             (aguF), and Uvs082 (uvs082) genes, complete cds
          Length = 38120

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 172   tcgatgccggccttcttggcgacggcgt 199
             |||||||||||||||||||| |||||||
Sbjct: 14433 tcgatgccggccttcttggccacggcgt 14460
to top
>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete sequence
          Length = 195224

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 316    ttggtcttgtggttggagaaggac 339
              ||||||||||||||||||||||||
Sbjct: 191803 ttggtcttgtggttggagaaggac 191826
to top
>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence
          Length = 172103

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 316   ttggtcttgtggttggagaaggac 339
             ||||||||||||||||||||||||
Sbjct: 66514 ttggtcttgtggttggagaaggac 66537
to top
>gb|AY190738.1| Pagrus major 40S ribosomal protein S18 mRNA, partial cds
          Length = 477

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 161 tcttgttgaggtcgatgccggccttc 186
           ||||||||||||||||| ||||||||
Sbjct: 128 tcttgttgaggtcgatgtcggccttc 103
to top
>gb|BC079336.1| Rattus norvegicus similar to hypothetical protein D4Ertd89e, mRNA
            (cDNA clone MGC:94772 IMAGE:7106021), complete cds
          Length = 2708

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 40   aggaaaaaggggagaaaaggaaaact 65
            ||||||||||||| ||||||||||||
Sbjct: 2330 aggaaaaaggggaaaaaaggaaaact 2305
to top
>ref|NM_001014191.1| Rattus norvegicus similar to hypothetical protein D4Ertd89e
            (RGD1305703), mRNA
          Length = 2708

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 40   aggaaaaaggggagaaaaggaaaact 65
            ||||||||||||| ||||||||||||
Sbjct: 2330 aggaaaaaggggaaaaaaggaaaact 2305
to top
>ref|XM_482939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 42   gaaaaaggggagaaaaggaaa 62
            |||||||||||||||||||||
Sbjct: 1320 gaaaaaggggagaaaaggaaa 1340
to top
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 168    gaggtcgatgccggccttcttggcg 192
              |||||||||||||||||||| ||||
Sbjct: 142490 gaggtcgatgccggccttctcggcg 142466
to top
>gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, complete sequence
          Length = 168656

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   ggtggagagcctgagcttgac 254
             |||||||||||||||||||||
Sbjct: 60045 ggtggagagcctgagcttgac 60065
to top
>gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome 16, complete sequence
          Length = 197096

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   catcactcatttcttgttgag 170
             |||||||||||||||||||||
Sbjct: 26717 catcactcatttcttgttgag 26697
to top
>emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 on chromosome X, complete
             sequence
          Length = 107677

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    taggaaaaaggggagaaaaggaaaa 63
             ||||||||| |||||||||||||||
Sbjct: 77019 taggaaaaatgggagaaaaggaaaa 77043
to top
>gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, complete sequence
          Length = 171158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    aaaaaggggagaaaaggaaaa 63
             |||||||||||||||||||||
Sbjct: 26680 aaaaaggggagaaaaggaaaa 26700
to top
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 172    tcgatgccggccttcttggcg 192
              |||||||||||||||||||||
Sbjct: 257293 tcgatgccggccttcttggcg 257273
to top
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    cctgagcttgacgtagcgctt 263
              |||||||||||||||||||||
Sbjct: 178938 cctgagcttgacgtagcgctt 178958
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 336     ggacaccttgttggcccggtt 356
               |||||||||||||||||||||
Sbjct: 3942333 ggacaccttgttggcccggtt 3942353
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 178     ccggccttcttggcgacggcgtcgaggcc 206
               ||||||||||||||| ||||| |||||||
Sbjct: 1871528 ccggccttcttggcggcggcggcgaggcc 1871500
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 42       gaaaaaggggagaaaaggaaa 62
                |||||||||||||||||||||
Sbjct: 23473380 gaaaaaggggagaaaaggaaa 23473400
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 275      accacagcttcttgtactgca 295
                |||||||||||||||||||||
Sbjct: 19426266 accacagcttcttgtactgca 19426286
to top
>gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Cancer Institute Human Bac
             Library) complete sequence
          Length = 94508

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 43    aaaaaggggagaaaaggaaaactga 67
             ||||||||||||||| |||||||||
Sbjct: 28463 aaaaaggggagaaaaagaaaactga 28439
to top
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     aaaaaggggagaaaaggaaaa 63
              |||||||||||||||||||||
Sbjct: 440294 aaaaaggggagaaaaggaaaa 440314
to top
>gb|AY957387.1| Pseudomonas stutzeri DnrE (dnrE) gene, complete cds; NarL-like (narL)
             and NarX-like (narX) genes, complete sequence; NarK
             (narK), NarM (narM), NarG (narG), NarH (narH), NarJ
             (narJ), and NarI (narI) genes, complete cds; and unknown
             gene
          Length = 15150

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   tcgatgccggccttcttggcg 192
             |||||||||||||||||||||
Sbjct: 11676 tcgatgccggccttcttggcg 11656
to top
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0409B11
          Length = 168354

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 275    accacagcttcttgtactgca 295
              |||||||||||||||||||||
Sbjct: 115804 accacagcttcttgtactgca 115824
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 167     tgaggtcgatgccggccttct 187
               |||||||||||||||||||||
Sbjct: 4649842 tgaggtcgatgccggccttct 4649822
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 197     cgtcgaggccgtgcttctcga 217
               |||||||||||||||||||||
Sbjct: 1053745 cgtcgaggccgtgcttctcga 1053765



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 166     ttgaggtcgatgccggccttcttggcga 193
               |||| |||||||||||||||| ||||||
Sbjct: 1834197 ttgatgtcgatgccggccttcctggcga 1834224
to top
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_E05
          Length = 126978

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    gaaaaaggggagaaaaggaaa 62
             |||||||||||||||||||||
Sbjct: 64795 gaaaaaggggagaaaaggaaa 64815
to top
>emb|Y00142.1|SLXP55 Streptomyces lividans DNA for xp55 protein and p49 protein
          Length = 4540

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 172  tcgatgccggccttcttggcg 192
            |||||||||||||||||||||
Sbjct: 3697 tcgatgccggccttcttggcg 3677
to top
>gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete sequence
          Length = 233833

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    aggaaaaaggggagaaaagga 60
             |||||||||||||||||||||
Sbjct: 64825 aggaaaaaggggagaaaagga 64845
to top
>emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chromosome 4, complete
              sequence
          Length = 183261

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     aaaaaggggagaaaaggaaaa 63
              |||||||||||||||||||||
Sbjct: 120356 aaaaaggggagaaaaggaaaa 120336
to top
>gb|AC173480.1| Mus musculus BAC clone RP23-422D12 from chromosome 6, complete sequence
          Length = 185966

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     aggaaaaaggggagaaaagga 60
              |||||||||||||||||||||
Sbjct: 176459 aggaaaaaggggagaaaagga 176479
to top
>dbj|AP002075.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2230O14, complete
             sequence
          Length = 118977

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    aaaaggaaaactgaagataaa 74
             |||||||||||||||||||||
Sbjct: 83967 aaaaggaaaactgaagataaa 83947
to top
>ref|NM_128905.2| Arabidopsis thaliana structural constituent of ribosome AT2G33450
           mRNA, complete cds
          Length = 626

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 cttcttggtcttgtggttggagaa 335
           |||||||||||||||||| |||||
Sbjct: 317 cttcttggtcttgtggttagagaa 294
to top
>gb|AC121142.12| Mus musculus chromosome 10, clone RP23-479G23, complete sequence
          Length = 203838

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ggagaaaaggaaaactgaag 69
            ||||||||||||||||||||
Sbjct: 9207 ggagaaaaggaaaactgaag 9226
to top
>gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosome 13, complete
            sequence
          Length = 202409

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 40   aggaaaaaggggagaaaaggaaaa 63
            |||||||||| |||||||||||||
Sbjct: 9511 aggaaaaaggagagaaaaggaaaa 9488
to top
>ref|XM_421335.1| PREDICTED: Gallus gallus similar to KIAA1409 (LOC423426), mRNA
          Length = 7074

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  tgcaggttcacaaattgctg 311
            ||||||||||||||||||||
Sbjct: 6435 tgcaggttcacaaattgctg 6454
to top
>gb|AC116527.18| Mus musculus chromosome 16, clone RP24-354B8, complete sequence
          Length = 165306

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    aggaaaaaggggagaaaaggaaaa 63
             ||||||||||||| ||||||||||
Sbjct: 40743 aggaaaaaggggaaaaaaggaaaa 40766
to top
>ref|NM_001007254.1| Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1
            (ATP6V1C1), transcript variant 2, mRNA
          Length = 5667

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   aaaggaaaactgaagataaatcca 78
            |||| |||||||||||||||||||
Sbjct: 3028 aaagaaaaactgaagataaatcca 3005
to top
>ref|NM_001695.3| Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1
            (ATP6V1C1), transcript variant 1, mRNA
          Length = 5721

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   aaaggaaaactgaagataaatcca 78
            |||| |||||||||||||||||||
Sbjct: 3082 aaagaaaaactgaagataaatcca 3059
to top
>gb|AC140201.3| Mus musculus BAC clone RP23-267F15 from chromosome 16, complete sequence
          Length = 166079

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaaaggggagaaaaggaaaa 63
              ||||||||||||||||||||
Sbjct: 148380 aaaaggggagaaaaggaaaa 148399
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 195     ggcgtcgaggccgtgcttctcgat 218
               |||||||| |||||||||||||||
Sbjct: 2647980 ggcgtcgatgccgtgcttctcgat 2648003
to top
>gb|AC068663.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-280D18, complete
             sequence
          Length = 221134

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 57688 aaaaggggagaaaaggaaaa 57669



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 57672 aaaaggggagaaaaggaaaa 57653
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     cgatgccggccttcttggcg 192
               ||||||||||||||||||||
Sbjct: 2294327 cgatgccggccttcttggcg 2294308
to top
>gb|AC124259.6| Homo sapiens chromosome 11, clone RP11-21N2, complete sequence
          Length = 99973

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    aggaaaaaggggagaaaaggaaaa 63
             |||||||| |||||||||||||||
Sbjct: 46986 aggaaaaatgggagaaaaggaaaa 46963
to top
>gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosome 6, complete sequence
          Length = 211809

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    aggaaaaaggggagaaaaggaaaa 63
             ||||||||||| ||||||||||||
Sbjct: 78171 aggaaaaagggaagaaaaggaaaa 78194
to top
>gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome 12, complete sequence
          Length = 149712

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   tcatcatcactcatttcttg 165
             ||||||||||||||||||||
Sbjct: 64280 tcatcatcactcatttcttg 64261
to top
>gb|AC116651.6| Homo sapiens BAC clone RP11-799M12 from 4, complete sequence
          Length = 61067

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   aattgctgcttcttggtctt 323
             ||||||||||||||||||||
Sbjct: 54942 aattgctgcttcttggtctt 54923
to top
>gb|AC112681.12| Mus musculus chromosome 16, clone RP23-272P19, complete sequence
          Length = 228367

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 32351 aaaaggggagaaaaggaaaa 32370
to top
>gb|AC113541.10| Mus musculus chromosome 5, clone RP23-185N2, complete sequence
          Length = 210222

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaaaggggagaaaaggaaaa 63
              ||||||||||||||||||||
Sbjct: 139397 aaaaggggagaaaaggaaaa 139416



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaaaggggagaaaaggaaaa 63
              ||||||||||||||||||||
Sbjct: 139381 aaaaggggagaaaaggaaaa 139400
to top
>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence
          Length = 123565

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   cacaaattgctgcttcttggtctt 323
             ||||| ||||||||||||||||||
Sbjct: 46461 cacaacttgctgcttcttggtctt 46484
to top
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 300    cacaaattgctgcttcttggtctt 323
              ||||| ||||||||||||||||||
Sbjct: 107289 cacaacttgctgcttcttggtctt 107266
to top
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33
             Contains the 5' end of a novel gene and the 3' end of a
             novel gene, complete sequence
          Length = 176422

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ggaaatcaagaagatatgct 140
             ||||||||||||||||||||
Sbjct: 51558 ggaaatcaagaagatatgct 51577
to top
>ref|NG_004051.1| Mus musculus immunoglobulin lambda chain complex (Igl) on chromosome 16
          Length = 234987

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 58001 aaaaggggagaaaaggaaaa 57982
to top
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 166    ttgaggtcgatgccggccttcttggcga 193
              |||| ||||| |||||||||||||||||
Sbjct: 129405 ttgacgtcgaggccggccttcttggcga 129432
to top
>emb|AL596163.1| Listeria innocua Clip11262 complete genome, segment 1/12
          Length = 231450

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    ttcacaaattgctgcttctt 317
              ||||||||||||||||||||
Sbjct: 215287 ttcacaaattgctgcttctt 215268
to top
>gb|AY114618.1| Arabidopsis thaliana putative chloroplast 50S ribosomal protein L28
           (At2g33450) mRNA, complete cds
          Length = 484

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 cttcttggtcttgtggttggagaa 335
           |||||||||||||||||| |||||
Sbjct: 276 cttcttggtcttgtggttagagaa 253
to top
>dbj|AK090702.1| Homo sapiens cDNA FLJ33383 fis, clone BRACE2006514
          Length = 2035

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aaaggaaaactgaagataaatcca 78
           |||| |||||||||||||||||||
Sbjct: 178 aaagaaaaactgaagataaatcca 155
to top
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence
          Length = 126875

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 300   cacaaattgctgcttcttggtctt 323
             ||||| ||||||||||||||||||
Sbjct: 61448 cacaacttgctgcttcttggtctt 61425
to top
>gb|AC108683.2| Homo sapiens Xp BAC RP11-539J11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 61375

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 39827 aaaaggggagaaaaggaaaa 39808
to top
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete
             sequence
          Length = 152593

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 312   cttcttggtcttgtggttggagaa 335
             |||||||||||||||||| |||||
Sbjct: 78080 cttcttggtcttgtggttagagaa 78057
to top
>gb|AC116545.1| Homo sapiens X BAC CTD-2009P21 (CalTech Human BAC Library D) complete
            sequence
          Length = 25300

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   aaaaggggagaaaaggaaaa 63
            ||||||||||||||||||||
Sbjct: 3769 aaaaggggagaaaaggaaaa 3750
to top
>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence
          Length = 194297

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     aggaaaaaggggagaaaaggaaaa 63
              |||||||| |||||||||||||||
Sbjct: 190343 aggaaaaatgggagaaaaggaaaa 190366
to top
>gb|AY072373.1| Arabidopsis thaliana putative chloroplast 50S ribosomal protein L28
           (At2g33450) mRNA, complete cds
          Length = 617

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 cttcttggtcttgtggttggagaa 335
           |||||||||||||||||| |||||
Sbjct: 314 cttcttggtcttgtggttagagaa 291
to top
>gb|AC158985.2| Mus musculus BAC clone RP23-277H13 from chromosome 16, complete sequence
          Length = 174321

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     aggaaaaaggggagaaaaggaaaa 63
              ||||||||||||| ||||||||||
Sbjct: 156557 aggaaaaaggggaaaaaaggaaaa 156580
to top
>gb|AC090058.21| Homo sapiens 12 BAC RP11-112N23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181102

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   cctcccaccacagcttcttg 288
             ||||||||||||||||||||
Sbjct: 92686 cctcccaccacagcttcttg 92667
to top
>emb|BX817300.1|CNS0ACFR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZF06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 838

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 40  aggaaaaaggggagaaaaggaaaa 63
           ||||||||||| ||||||||||||
Sbjct: 707 aggaaaaagggtagaaaaggaaaa 730
to top
>emb|BX819519.1|CNS0A8T8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB86ZD02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 604

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 cttcttggtcttgtggttggagaa 335
           |||||||||||||||||| |||||
Sbjct: 297 cttcttggtcttgtggttagagaa 274
to top
>gb|AC007500.7| Homo sapiens chromosome 16 clone RP11-545E2, complete sequence
          Length = 220562

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aaaaggggagaaaaggaaaa 63
              ||||||||||||||||||||
Sbjct: 191719 aaaaggggagaaaaggaaaa 191700
to top
>gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete
             sequence
          Length = 85657

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   atcactcatttcttgttgag 170
             ||||||||||||||||||||
Sbjct: 70870 atcactcatttcttgttgag 70851
to top
>dbj|AB110611.1| Pseudomonas sp. MT-1 nar gene cluster (orf1, orf2, orf3, narL, narX,
             narK, orf4, narM, narG, narH, narJ, narI, nifM), partial
             and complete cds
          Length = 15819

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tcgatgccggccttcttggc 191
             ||||||||||||||||||||
Sbjct: 11885 tcgatgccggccttcttggc 11866
to top
>gb|AY087094.1| Arabidopsis thaliana clone 31633 mRNA, complete sequence
          Length = 616

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 cttcttggtcttgtggttggagaa 335
           |||||||||||||||||| |||||
Sbjct: 317 cttcttggtcttgtggttagagaa 294
to top
>ref|XM_218387.3| PREDICTED: Rattus norvegicus similar to F-box only protein 6
           (F-box/G-domain protein 2) (predicted) (LOC292755), mRNA
          Length = 801

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 276 ccacagcttcttgtactgcaggttcacaaattgctgcttc 315
           |||||||||||||  | ||||||||||| |||||| ||||
Sbjct: 474 ccacagcttcttggccagcaggttcacacattgctccttc 435
to top
>dbj|BS000217.1| Pan troglodytes chromosome 22 clone:PTB-004I03, map 22, complete
            sequences
          Length = 53637

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 40   aggaaaaaggggagaaaaggaaaa 63
            ||||||||||| ||||||||||||
Sbjct: 4159 aggaaaaagggaagaaaaggaaaa 4136
to top
>emb|BX648079.1|HSM808225 Homo sapiens mRNA; cDNA DKFZp686N08183 (from clone DKFZp686N08183)
          Length = 5620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   aaaggaaaactgaagataaatcca 78
            |||| |||||||||||||||||||
Sbjct: 3020 aaagaaaaactgaagataaatcca 2997
to top
>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18
          Length = 80099

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   atcactcatttcttgttgag 170
             ||||||||||||||||||||
Sbjct: 45197 atcactcatttcttgttgag 45216
to top
>gb|AF363578.1| Homo sapiens ATPase H+ transporting lysosomal protein (ATP6C) gene,
             complete cds; BAALC (BAALC) gene, complete cds,
             alternatively spliced; and frizzled-like protein 6 (FZD6)
             gene, complete cds
          Length = 347253

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    aaaggaaaactgaagataaatcca 78
             |||| |||||||||||||||||||
Sbjct: 79876 aaagaaaaactgaagataaatcca 79853
to top
>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence
          Length = 115963

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   atcactcatttcttgttgag 170
             ||||||||||||||||||||
Sbjct: 13152 atcactcatttcttgttgag 13171
to top
>gb|AY105324.1| Zea mays PCO143177 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gacggcgtcgaggccgtgct 211
           ||||||||||||||||||||
Sbjct: 919 gacggcgtcgaggccgtgct 938
to top
>dbj|AP000843.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684N3, complete
              sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaaaggggagaaaaggaaaa 63
              ||||||||||||||||||||
Sbjct: 162331 aaaaggggagaaaaggaaaa 162350
to top
>dbj|AP001699.1| Homo sapiens genomic DNA, chromosome 21q, section 43/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     aggaaaaaggggagaaaaggaaaa 63
              ||||||||||| ||||||||||||
Sbjct: 168047 aggaaaaagggaagaaaaggaaaa 168024
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     cgacggcgtcgaggccgtgc 210
               ||||||||||||||||||||
Sbjct: 2670653 cgacggcgtcgaggccgtgc 2670634
to top
>emb|CR974566.12| Pig DNA sequence from clone CH242-112C22 on chromosome 17, complete
            sequence
          Length = 164668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   aaaaaggggagaaaaggaaa 62
            ||||||||||||||||||||
Sbjct: 8457 aaaaaggggagaaaaggaaa 8476
to top
>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete
             sequence
          Length = 209764

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     catttatttataaggttact 26
             ||||||||||||||||||||
Sbjct: 73924 catttatttataaggttact 73905
to top
>gb|AC153953.2| Mus musculus 10 BAC RP24-394B11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 163098

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   tcttctccagaaaggggcag 381
             ||||||||||||||||||||
Sbjct: 74771 tcttctccagaaaggggcag 74790
to top
>dbj|AP003550.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1639H6, complete
             sequence
          Length = 140609

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    aaaggaaaactgaagataaatcca 78
             |||| |||||||||||||||||||
Sbjct: 63950 aaagaaaaactgaagataaatcca 63927
to top
>dbj|AP001605.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1987H1, APP-D21S292
             region, complete sequence
          Length = 165942

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    aggaaaaaggggagaaaaggaaaa 63
             ||||||||||| ||||||||||||
Sbjct: 70069 aggaaaaagggaagaaaaggaaaa 70046
to top
>dbj|AP003029.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTC-343F17, complete
             sequence
          Length = 142882

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aaaaggggagaaaaggaaaa 63
             ||||||||||||||||||||
Sbjct: 33062 aaaaggggagaaaaggaaaa 33081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,503,146
Number of Sequences: 3902068
Number of extensions: 4503146
Number of successful extensions: 135347
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134779
Number of HSP's gapped (non-prelim): 567
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top