ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16n17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2284 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Minus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 1658 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 1599 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 1598 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 1539 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 1538 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 1479 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 1478 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 1427 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 1877 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 1818 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 1817 tgaggcatgcaggaatccatgagcattca 1789
>ref|XM_507105.1| PREDICTED Oryza sativa (japonica cultivar-group), B1203H11.34 mRNA Length = 2549 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Minus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 1918 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 1859 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 1858 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 1799 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 1798 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 1739 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 1738 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 1687 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 2137 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 2078 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 2077 tgaggcatgcaggaatccatgagcattca 2049
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Plus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 1200172 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 1200231 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 1200232 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 1200291 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 1200292 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 1200351 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 1200352 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 1200403 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 1199953 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 1200012 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 1200013 tgaggcatgcaggaatccatgagcattca 1200041
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Plus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 113409 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 113468 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 113469 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 113528 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 113529 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 113588 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 113589 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 113640 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 238 gtccatcatctaggttgtatttacatgtcagcctg-taagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 113190 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 113249 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 113250 tgaggcatgcaggaatccatgagcattca 113278
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Plus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 29479 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 29538 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 29539 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 29598 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 29599 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 29658 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 29659 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 29710 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 29260 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 29319 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 29320 tgaggcatgcaggaatccatgagcattca 29348
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Plus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 67251 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 67310 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 67311 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 67370 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 67371 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 67430 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 67431 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 67482 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 67032 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 67091 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 67092 tgaggcatgcaggaatccatgagcattca 67120
>emb|AJ312315.1|OSA312315 Oryza sativa putative B'teta gene for protein phosphatase 2A B'teta subunit, exons 1-2 Length = 3753 Score = 262 bits (132), Expect = 1e-66 Identities = 207/232 (89%) Strand = Plus / Minus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 3227 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 3168 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 3167 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 3108 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 3107 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 3048 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 3047 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 2996 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 3446 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 3387 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 3386 tgaggcatgcaggaatccatgagcattca 3358
>dbj|AK067159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096J23, full insert sequence Length = 2549 Score = 254 bits (128), Expect = 3e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 1918 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 1859 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 1858 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 1799 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||| ||||||||||||||||||||||||||| || | Sbjct: 1798 atccatgaatatcttgcgaacattaaaactcaagctttgaactgcctggttccagtgttc 1739 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct: 1738 ttttgtatttcgttctattgcaggaaggattatgggcagtatcaccttgctg 1687 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 2137 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 2078 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 2077 tgaggcatgcaggaatccatgagcattca 2049
>dbj|AK060794.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E07, full insert sequence Length = 2284 Score = 254 bits (128), Expect = 3e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 442 tgacgaggcaatttcctctaggcgcttccatgtagcctcacgttttgatcgcaccgcatc 501 |||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| Sbjct: 1658 tgacgaggcaatctcttctaggcgcttccatgtggcctcacgttttgatctcaacgcggt 1599 Query: 502 ttcttgagcttcatcgtcctggaacttcttgaggcacccctcgaacagtacagggtcatg 561 ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 1598 ttcttttgcttcatcttcctcaaacttcttgaggcactcctcaaacagtacagggtcatg 1539 Query: 562 gtccaggaatattttgcgaacattaagactcaagctttgaactgcctggttccaatgacc 621 |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 1538 atccatgaatatcttgcgaacattaagactcaagctttgaactgcctggttccagtgttc 1479 Query: 622 ttttgtatttcgttctaacgaaggaaggattatgggcagtaacaccttgctg 673 ||||||||||||||||| | |||||||||||||||||| | |||||||||| Sbjct: 1478 ttttgtatttcgttctattgcaggaaggattatgggcagcatcaccttgctg 1427 Score = 58.0 bits (29), Expect = 4e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 238 gtccatcatctaggttgtatttacatgtcagcctgt-aagatgttcaggaacgagtaaca 296 |||||||||||| |||||| |||| ||||||||| || |||||||||| | ||||||| Sbjct: 1877 gtccatcatctaccttgtatatacaagtcagcctgcgaaaatgttcaggagcaagtaaca 1818 Query: 297 agaggcaagcagtcgtccatgagcattca 325 |||||| |||| |||||||||||||| Sbjct: 1817 tgaggcatgcaggaatccatgagcattca 1789
>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b, complete sequence Length = 66866 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 498 catcttcttgagcttcatcgtcctg 522 ||||||||||||||||||| ||||| Sbjct: 16611 catcttcttgagcttcatcttcctg 16635
>gb|AY221089.1| Solanum tuberosum cellulose synthase (StCesA2) mRNA, partial cds Length = 2515 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cacattgacctcttgcagca 119 |||||||||||||||||||| Sbjct: 2303 cacattgacctcttgcagca 2284
>emb|AJ566434.1|TCA566434 Theobroma cacao microsatellite, clone mTcCIR90 Length = 435 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ccatcatctaggttgtatttacat 263 |||| ||||||||||||||||||| Sbjct: 349 ccattatctaggttgtatttacat 326
>emb|AL358394.14| Human DNA sequence from clone RP11-445N18 on chromosome 10 Contains four novel genes, the 5' end of a novel gene, a Ras suppressor protein 1 pseudogene, a pseudogene similar to part of cubilin (intrinsic factor-cobalamin receptor, CUBN), the 5' end of a breast cancer antigen (NY-BR-1) pseudogene, a ribosomal protein S19 pseudogene, and a novel pseudogene similar to part of KIAA1052 protein, complete sequence Length = 116859 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 597 tttgaactgcctggttccaatgac 620 |||||||||||||| ||||||||| Sbjct: 52740 tttgaactgcctgggtccaatgac 52763
>emb|AL022344.3|HSY214H10 Human DNA sequence from clone XX-Y214H10 on chromosome 10 Contains a vomeronasal receptor (V1R) pseudogene, a cubilin (intrinsic factor-cobalamin receptor) (CUBN) pseudogene, gene KIAA0187, two novel genes, the gene for a novel protein similar to Ras suppressor protein 1 (RSU1) and four CpG islands, complete sequence Length = 197864 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 597 tttgaactgcctggttccaatgac 620 |||||||||||||| ||||||||| Sbjct: 83466 tttgaactgcctgggtccaatgac 83443
>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence Length = 194187 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 597 tttgaactgcctggttccaatgac 620 |||||||||||||| ||||||||| Sbjct: 159361 tttgaactgcctgggtccaatgac 159384
>emb|BX826998.1|CNS0A44X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZH10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ttgagcttcatcgtcctgga 524 |||||||||||||||||||| Sbjct: 562 ttgagcttcatcgtcctgga 581
>gb|AC013438.6| Homo sapiens BAC clone RP11-218M2 from 2, complete sequence Length = 65971 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 gaaggaaggattatgggcag 660 |||||||||||||||||||| Sbjct: 39004 gaaggaaggattatgggcag 38985
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 agttcaacaaaatcagcacc 45 |||||||||||||||||||| Sbjct: 6231162 agttcaacaaaatcagcacc 6231181
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 agcgattcaacttgatcctg 349 |||||||||||||||||||| Sbjct: 872843 agcgattcaacttgatcctg 872824
>gb|U31600.1|HEU31600 Heliocidaris erythrogramma HEHBOX10 (HeHbox10) gene, partial cds Length = 1318 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 495 ccgcatcttcttgagcttcatcgtcctg 522 |||||||||||| ||||||||| ||||| Sbjct: 303 ccgcatcttcttcagcttcatcctcctg 276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,176,181 Number of Sequences: 3902068 Number of extensions: 5176181 Number of successful extensions: 109950 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109861 Number of HSP's gapped (non-prelim): 80 length of query: 682 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 659 effective length of database: 17,143,297,704 effective search space: 11297433186936 effective search space used: 11297433186936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
