ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17c16 |
|---|---|
| Clone Library Name | barley_pub |
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 54.3 bits (129), Expect = 3e-07 Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Frame = -1 Query: 653 VRVSYVVHVMLVFPIVFFALRLNLDGLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFI 474 VRV+ + V L PIV F +R + +LFP R +I V LL I L F Sbjct: 369 VRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQEF---SWLRHVLIAVGLLTCINLLVIFA 425 Query: 473 PSIWDAFQFTGATAAVLIGFIFPAMI---ILRDSYGIATKRDKVLAVTMIVLAVLSNSVA 303 P+I F GAT+A + FIFPA+ I+ A K+LA+ +L L +++ Sbjct: 426 PNILGIFGVIGATSAPFLIFIFPAIFYFRIMPTEKEPARSTPKILALCFAMLGFLLMTMS 485 Query: 302 L 300 L Sbjct: 486 L 486
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 49.3 bits (116), Expect = 1e-05 Identities = 40/127 (31%), Positives = 61/127 (48%) Frame = -1 Query: 653 VRVSYVVHVMLVFPIVFFALRLNLDGLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFI 474 VRV+ ++ V L PIV F +R + +LF R +I LL I L F Sbjct: 369 VRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEF---SWLRHVLIATGLLTCINLLVIFA 425 Query: 473 PSIWDAFQFTGATAAVLIGFIFPAMIILRDSYGIATKRDKVLAVTMIVLAVLSNSVALYS 294 P+I F GAT+A + FIFPA+ R + T+++ V + T +LA+ +V Sbjct: 426 PNILGIFGIIGATSAPCLIFIFPAIFYFRI---MPTEKEPVRS-TPKILALCFAAVGFLL 481 Query: 293 DAMSIFY 273 MS+ + Sbjct: 482 MTMSLSF 488
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Frame = -1 Query: 653 VRVSYVVHVMLVFPIVFFALRLNLDGLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFI 474 VRV+ ++ V L PIV F +R + +LF R +I LL I L F Sbjct: 370 VRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEF---SWLRHVLIATGLLTCINLLVIFA 426 Query: 473 PSIWDAFQFTGATAAVLIGFIFPAMI---ILRDSYGIATKRDKVLAVTMIVLAVLSNSVA 303 P+I F GAT+A + FIFPA+ I+ A K+LA+ + L +++ Sbjct: 427 PNILGIFGIIGATSAPCLIFIFPAIFYFRIMPTDKEPARSTPKILALCFAAVGFLLMTMS 486 Query: 302 L 300 L Sbjct: 487 L 487
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 35.4 bits (80), Expect = 0.15 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Frame = -1 Query: 650 RVSYVVHVMLVFPIVFFALRLNLDGLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFIP 471 R+ + ++ V P++ F +R L +F + + R I+ V L+ V A F P Sbjct: 498 RLFLLFQMITVLPLLMFLVRSQLFYAIFGQTWPGAI---RVIILNVLLIAVAVGFATFYP 554 Query: 470 SIWDAFQFTGATAAVLIGFIFPAMIILRDS--YGIATKRDKVLAVTMIVLAVLSNSVALY 297 ++ ++ G+ + ++ F PAM+ ++ S G T K +IV+ V +N +A + Sbjct: 555 NVGSILRYVGSISGLVYVFALPAMVYIKQSEAAGTLTPMKKYAHYGIIVIGV-ANLIAQF 613
>AVT6_YEAST (P40074) Vacuolar amino acid transporter 6| Length = 448 Score = 34.7 bits (78), Expect = 0.26 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -1 Query: 536 RRFTIITVSLLVVIYLAANFIPSIWDAFQFTGATAAVLIGFIFPAM 399 + F +IT S+LV YL A + S+ GAT + I FI P + Sbjct: 356 KSFIVITCSILVASYLVAISVSSLARVLAIVGATGSTSISFILPGL 401
>TOIP2_MOUSE (Q8BYU6) Torsin-1A-interacting protein 2| Length = 502 Score = 34.3 bits (77), Expect = 0.34 Identities = 26/89 (29%), Positives = 38/89 (42%) Frame = +3 Query: 387 PEYDHGRKDETNQDSSCSTSELEGVPDAWYEVGSKINHNKERDGDNGKPSVVMRNVP*GG 566 P +HG D + D +CS S+L G DA E S + E GD G+ + + Sbjct: 114 PHSEHGGGDALDLDPNCSQSDLGGRADAHLESSSVA--SPEGAGDRGEADEHLESSSAAP 171 Query: 567 EEESIQVEPKGKEDYREDKHDMDYIAHSD 653 E + G+E ED D + HS+ Sbjct: 172 TEGAGDRGEAGQELLAEDSTDGQSLGHSN 200
>AVT5_YEAST (P38176) Vacuolar amino acid transporter 5| Length = 509 Score = 32.7 bits (73), Expect = 0.99 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -1 Query: 548 SHDNRRFTIITVSLLVVIYLAANFIPSIWDAFQFTGATAAVLIGFIFPAM 399 S R IIT+ +L+ YL A I S+ GAT + I FI P + Sbjct: 406 SESLRHINIITLCILLFSYLLAISITSLAKVLAIVGATGSTSISFILPGL 455
>SEC7_YEAST (P11075) Protein transport protein SEC7| Length = 2009 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/88 (25%), Positives = 38/88 (43%) Frame = +3 Query: 396 DHGRKDETNQDSSCSTSELEGVPDAWYEVGSKINHNKERDGDNGKPSVVMRNVP*GGEEE 575 D+G +D+ + DSS S + E D+ G + D ++ + N G E Sbjct: 108 DNGDEDDEDVDSSSSETSSEDGEDSESVSGESTESSSGEDEESDESDGNTSNSSSGDESG 167 Query: 576 SIQVEPKGKEDYREDKHDMDYIAHSDYI 659 S + E + +E+ E+ IAH D + Sbjct: 168 SEEEEEEEEEEEEEENAGEPAIAHQDSV 195
>YDJK_ECOLI (P76230) Hypothetical metabolite transport protein ydjK| Length = 459 Score = 31.6 bits (70), Expect = 2.2 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = -1 Query: 530 FTIITVSLLVVIYLAANFIPSIWDA---FQFTGATAAV--LIGFIFP-AMIILRDSYGIA 369 F +IT + V Y +A ++P IW + +G AV + G P A+ +L SYG+ Sbjct: 360 FFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGV- 418 Query: 368 TKRDKVLAVTMIVLAVLSNSVALYSDAMSIFYRKVEA 258 T +L I++A+ ++ + + +S+ ++A Sbjct: 419 TGVFILLGAVSIIVAIAIATIGIETKGVSVESLSIDA 455
>FLIR_BUCBP (Q89AZ0) Flagellar biosynthetic protein fliR| Length = 257 Score = 30.8 bits (68), Expect = 3.7 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -1 Query: 629 VMLVFPIVFFALRLNLD-GLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFIP 471 +ML+FPI+ L LNL G+L + IS + F TV+LLV I L FIP Sbjct: 184 IMLLFPIIIVQLLLNLSIGILNRVAPQISILSLGF---TVTLLVGIILLYFFIP 234
>CBK1_EMENI (P0C1B1) Serine/threonine-protein kinase cbk1 (EC 2.7.11.1)| Length = 884 Score = 30.4 bits (67), Expect = 4.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 393 YDHGRKDETNQDSSCSTSELEGVPDAWYEVGSK 491 +D G +D S S SEL+GV D W+ +G K Sbjct: 780 FDDGEHPSDREDDS-SDSELDGVQDKWHPLGGK 811
>MRAY_PORGI (Q7MWM6) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 419 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 15/122 (12%) Frame = -1 Query: 584 LDGLLFPTSRHISHDNRRFTIITVSLLVVIYLAANFIPSIWD----AFQFTGATAAVLIG 417 LDGL +S I F ++ + + YL FIP + AF F GAT L Sbjct: 236 LDGLATGSSAIIGVVLAIFAYVSSHIEMASYLNIMFIPGAEELTIFAFAFVGATIGFLWY 295 Query: 416 FIFPAMIILRDS-----------YGIATKRDKVLAVTMIVLAVLSNSVALYSDAMSIFYR 270 +PA + + D+ + + +++ +L + V + SV + +FY Sbjct: 296 NAYPAQVFMGDTGSLTLGGIIAVFALIIRKEMLLPILCFVFIIEGLSVMI-----QVFYF 350 Query: 269 KV 264 K+ Sbjct: 351 KL 352
>CYB_OVIDA (O78779) Cytochrome b| Length = 379 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = -1 Query: 527 TIITVSLLVVIYLAANFIPSIWDAFQFTGATAAVLIG--FIFPAMI 396 T+IT L + Y+ N + IW F AT FIFP MI Sbjct: 144 TVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFIFPFMI 189
>CYB_DAMLU (O47716) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = -1 Query: 527 TIITVSLLVVIYLAANFIPSIWDAFQFTGATAAVLIG--FIFPAMII 393 T+IT L + Y+ N + IW F AT FIFP +I+ Sbjct: 144 TVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFIFPFIIV 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,293,479 Number of Sequences: 219361 Number of extensions: 2085348 Number of successful extensions: 6687 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6662 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
