ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-14
2gb|AY106680.1| Zea mays PCO092004 mRNA sequence 50 0.010
3ref|XM_478998.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.039
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
5dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
6gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complet... 44 0.61
7gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.61
8ref|NM_115318.2| Arabidopsis thaliana GCN5 AT3G54610 (GCN5) mRNA... 42 2.4
9gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome ... 42 2.4
10emb|AL160281.17| Human DNA sequence from clone RP11-21M7 on chro... 42 2.4
11gb|BT008909.1| Arabidopsis thaliana At3g54610 mRNA, complete cds 42 2.4
12emb|AL138656.2|ATT14E10 Arabidopsis thaliana DNA chromosome 3, B... 42 2.4
13gb|AE010232.1| Pyrococcus furiosus DSM 3638, section 107 of 173 ... 42 2.4
14gb|AC153762.3| Loxodonta africana clone VMRC15-159I7, complete s... 42 2.4
15gb|AF338771.1|AF338771 Arabidopsis thaliana histone acetyltransf... 42 2.4
16gb|AF338768.1|AF338768 Arabidopsis thaliana histone acetyltransf... 42 2.4
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
19dbj|AK101726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
20emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-7... 42 2.4
21gb|BT002057.1| Arabidopsis thaliana Expressed protein (At3g54610... 42 2.4
22gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, compl... 42 2.4
23gb|AC156981.13| Mus musculus chromosome 18, clone RP23-145E3, co... 42 2.4
24emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-1... 42 2.4
25gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complet... 40 9.6
26gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp... 40 9.6
27ref|XM_529473.1| PREDICTED: Pan troglodytes LOC451768 (LOC451768... 40 9.6
28ref|NM_172414.1| Mus musculus RIKEN cDNA 2810002I04 gene (281000... 40 9.6
29gb|AC004650.1| Homo sapiens chromosome 5, P1 clone 207c2 (LBNL H... 40 9.6
30gb|AC163653.5| Mus musculus BAC clone RP24-334B8 from chromosome... 40 9.6
31ref|NM_031019.1| Rattus norvegicus corticotropin releasing hormo... 40 9.6
32gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, com... 40 9.6
33gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome... 40 9.6
34gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, comple... 40 9.6
35gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 9.6
36gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co... 40 9.6
37emb|AL591146.21| Mouse DNA sequence from clone RP23-252E4 on chr... 40 9.6
38gb|AC090233.16| Homo sapiens chromosome 18, clone RP11-675P24, c... 40 9.6
39dbj|AK036602.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 9.6
40gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33... 40 9.6
41gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosom... 40 9.6
42dbj|AK032455.1| Mus musculus adult male olfactory brain cDNA, RI... 40 9.6
43dbj|AK033213.1| Mus musculus 15 days embryo male testis cDNA, RI... 40 9.6
44gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmid... 40 9.6
45emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.6
46emb|X03036.1|RNCRFR Rat mRNA for corticotropin-releasing factor ... 40 9.6
47gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42... 40 9.6
48gb|AY713445.1| Feline immunodeficiency virus clone pOma3, comple... 40 9.6
49gb|BC049940.1| Mus musculus RIKEN cDNA 2810002I04 gene, mRNA (cD... 40 9.6
50gb|U56928.1|FIU56928 Feline immunodeficiency virus strain FIV-Om... 40 9.6
51gb|M54987.1|RATCRH Rat corticotropin releasing hormone (CRH) gen... 40 9.6 
>dbj|AK120222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041H24, full
            insert sequence
          Length = 2812

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 168/208 (80%), Gaps = 6/208 (2%)
 Strand = Plus / Minus

                                                                        
Query: 462  gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 521
            ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 2326 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 2267

                                                                        
Query: 522  gatcatccaccatcttttcctcgcctacttgtagatcttgttttc---tctaacgtttgt 578
            ||||| ||  ||||||||||||| || |||| || |||||||||    |||  |||||||
Sbjct: 2266 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 2207

                                                                        
Query: 579  tttgcttgtcggcttggattcgatgcttttgagtcatttttactggccaactgagcattc 638
            ||  |||| ||||||||||| |||| ||| |||||||||||||| |||||||| ||    
Sbjct: 2206 ttcacttgccggcttggatttgatggtttagagtcatttttactagccaactgtgc---t 2150

                                        
Query: 639  ttagacttctctgcttctgcctcttttt 666
            |||||||| |||||||||||||||||||
Sbjct: 2149 ttagacttttctgcttctgcctcttttt 2122



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 88   cctaccctttccctactcctatttgtacaatt 119
            ||||||||||||||  ||||||||||||||||
Sbjct: 2675 cctaccctttccctgttcctatttgtacaatt 2644
to top
>gb|AY106680.1| Zea mays PCO092004 mRNA sequence
          Length = 910

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 582 gcttgtcggcttggattcgatgcttttgagtcatttttactggccaactgagcattctta 641
           ||||||||||||||||| |||| ||| |||| |||||| |  |  || || || || || 
Sbjct: 199 gcttgtcggcttggatttgatgatttagagtgatttttgccagttaattgtgcgtttttg 140

                                    
Query: 642 gacttctctgcttctgcctcttttt 666
           | |||||||||||||||||||||||
Sbjct: 139 gccttctctgcttctgcctcttttt 115
to top
>ref|XM_478998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4884

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 639  ttagacttctctgcttctgcctcttttt 666
            |||||||| |||||||||||||||||||
Sbjct: 4769 ttagacttttctgcttctgcctcttttt 4742
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 639      ttagacttctctgcttctgcctcttttt 666
                |||||||| |||||||||||||||||||
Sbjct: 24213734 ttagacttttctgcttctgcctcttttt 24213761



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 88       cctaccctttccctactcctatttgtacaatt 119
                ||||||||||||||  ||||||||||||||||
Sbjct: 24213036 cctaccctttccctgttcctatttgtacaatt 24213067



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 122/155 (78%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                            
Query: 462      gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 521
                ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 24213472 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 24213531

                                                                            
Query: 522      gatcatccaccatcttttcctcgcctacttgtagatcttgttt---tctctaacgtttgt 578
                ||||| ||  ||||||||||||| || |||| || ||||||||   | |||  |||||||
Sbjct: 24213532 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 24213591

                                                   
Query: 579      tttgcttgtcggcttggattcgatgcttttgagtc 613
                ||  |||| ||||||||||| |||| ||| |||||
Sbjct: 24213592 ttcacttgccggcttggatttgatggtttagagtc 24213626
to top
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E05
          Length = 137364

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 639   ttagacttctctgcttctgcctcttttt 666
             |||||||| |||||||||||||||||||
Sbjct: 25285 ttagacttttctgcttctgcctcttttt 25312



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 88    cctaccctttccctactcctatttgtacaatt 119
             ||||||||||||||  ||||||||||||||||
Sbjct: 24587 cctaccctttccctgttcctatttgtacaatt 24618



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 122/155 (78%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                         
Query: 462   gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 521
             ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 25023 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 25082

                                                                         
Query: 522   gatcatccaccatcttttcctcgcctacttgtagatcttgttt---tctctaacgtttgt 578
             ||||| ||  ||||||||||||| || |||| || ||||||||   | |||  |||||||
Sbjct: 25083 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 25142

                                                
Query: 579   tttgcttgtcggcttggattcgatgcttttgagtc 613
             ||  |||| ||||||||||| |||| ||| |||||
Sbjct: 25143 ttcacttgccggcttggatttgatggtttagagtc 25177
to top
>gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complete sequence
          Length = 162214

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 400  ccttctccttttctttgccttc 421
            ||||||||||||||||||||||
Sbjct: 5805 ccttctccttttctttgccttc 5784
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 414     ttgccttcaaagacgcggtgcg 435
               ||||||||||||||||||||||
Sbjct: 1771177 ttgccttcaaagacgcggtgcg 1771156
to top
>ref|NM_115318.2| Arabidopsis thaliana GCN5 AT3G54610 (GCN5) mRNA, complete cds
          Length = 2018

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 ccacagatcatccaccatcttttcc 541
           |||||||| ||||||||||||||||
Sbjct: 526 ccacagatgatccaccatcttttcc 502
to top
>gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome 13, complete sequence
          Length = 234552

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 629    ctgagcattcttagacttctctgct 653
              ||||||||| |||||||||||||||
Sbjct: 224413 ctgagcattattagacttctctgct 224389
to top
>emb|AL160281.17| Human DNA sequence from clone RP11-21M7 on chromosome 1 Contains a
             novel gene, the 5' end of the RASAL2 gene for RAS protein
             activator like 2 and a CpG island, complete sequence
          Length = 180954

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   agcacaggtaagaaaaaagaa 219
             |||||||||||||||||||||
Sbjct: 74433 agcacaggtaagaaaaaagaa 74413
to top
>gb|BT008909.1| Arabidopsis thaliana At3g54610 mRNA, complete cds
          Length = 1707

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 ccacagatcatccaccatcttttcc 541
           |||||||| ||||||||||||||||
Sbjct: 493 ccacagatgatccaccatcttttcc 469
to top
>emb|AL138656.2|ATT14E10 Arabidopsis thaliana DNA chromosome 3, BAC clone T14E10
          Length = 94911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 517   ccacagatcatccaccatcttttcc 541
             |||||||| ||||||||||||||||
Sbjct: 82813 ccacagatgatccaccatcttttcc 82789
to top
>gb|AE010232.1| Pyrococcus furiosus DSM 3638, section 107 of 173 of the complete genome
          Length = 13800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 399   gccttctccttttctttgccttcaa 423
             ||||||||||| |||||||||||||
Sbjct: 13564 gccttctccttatctttgccttcaa 13588
to top
>gb|AC153762.3| Loxodonta africana clone VMRC15-159I7, complete sequence
          Length = 140444

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 402   ttctccttttctttgccttca 422
             |||||||||||||||||||||
Sbjct: 40988 ttctccttttctttgccttca 41008
to top
>gb|AF338771.1|AF338771 Arabidopsis thaliana histone acetyltransferase GCN5 (GCN5) gene,
            complete cds
          Length = 4622

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 517  ccacagatcatccaccatcttttcc 541
            |||||||| ||||||||||||||||
Sbjct: 1115 ccacagatgatccaccatcttttcc 1091
to top
>gb|AF338768.1|AF338768 Arabidopsis thaliana histone acetyltransferase GCN5 (GCN5) mRNA,
           complete cds
          Length = 1930

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 ccacagatcatccaccatcttttcc 541
           |||||||| ||||||||||||||||
Sbjct: 510 ccacagatgatccaccatcttttcc 486
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 341     gtactgtacaattgcttaaatgtgt 365
               |||||||||||||||| ||||||||
Sbjct: 2417702 gtactgtacaattgctcaaatgtgt 2417678
to top
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 341    gtactgtacaattgcttaaatgtgt 365
              |||||||||||||||| ||||||||
Sbjct: 146752 gtactgtacaattgctcaaatgtgt 146728
to top
>dbj|AK101726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061D12, full
            insert sequence
          Length = 2182

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 341  gtactgtacaattgcttaaatgtgt 365
            |||||||||||||||| ||||||||
Sbjct: 2059 gtactgtacaattgctcaaatgtgt 2035
to top
>emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171409

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 402    ttctccttttctttgccttca 422
              |||||||||||||||||||||
Sbjct: 117644 ttctccttttctttgccttca 117664
to top
>gb|BT002057.1| Arabidopsis thaliana Expressed protein (At3g54610) mRNA, complete
           cds
          Length = 1990

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 ccacagatcatccaccatcttttcc 541
           |||||||| ||||||||||||||||
Sbjct: 513 ccacagatgatccaccatcttttcc 489
to top
>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence
          Length = 224420

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 629    ctgagcattcttagacttctctgct 653
              ||||||||| |||||||||||||||
Sbjct: 129022 ctgagcattattagacttctctgct 128998
to top
>gb|AC156981.13| Mus musculus chromosome 18, clone RP23-145E3, complete sequence
          Length = 210762

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   aaaaaagaatgaagttagctt 231
             |||||||||||||||||||||
Sbjct: 89266 aaaaaagaatgaagttagctt 89286
to top
>emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-15E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158214

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 402   ttctccttttctttgccttca 422
             |||||||||||||||||||||
Sbjct: 35848 ttctccttttctttgccttca 35868
to top
>gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complete sequence
          Length = 175977

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 642   gacttctctgcttctgcctc 661
             ||||||||||||||||||||
Sbjct: 32085 gacttctctgcttctgcctc 32104
to top
>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   aagaacaggtaacatagcac 203
             ||||||||||||||||||||
Sbjct: 97020 aagaacaggtaacatagcac 97001
to top
>ref|XM_529473.1| PREDICTED: Pan troglodytes LOC451768 (LOC451768), mRNA
          Length = 511

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 cactgaacacctactggccg 284
           ||||||||||||||||||||
Sbjct: 118 cactgaacacctactggccg 99
to top
>ref|NM_172414.1| Mus musculus RIKEN cDNA 2810002I04 gene (2810002I04Rik), mRNA
          Length = 4421

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 1861 atttgccccgcaggcagatc 1842
to top
>gb|AC004650.1| Homo sapiens chromosome 5, P1 clone 207c2 (LBNL H33), complete sequence
          Length = 79635

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   aagaaaaaagaatgaagtta 227
             ||||||||||||||||||||
Sbjct: 28663 aagaaaaaagaatgaagtta 28682
to top
>gb|AC163653.5| Mus musculus BAC clone RP24-334B8 from chromosome 14, complete sequence
          Length = 201678

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 628    actgagcattcttagacttc 647
              ||||||||||||||||||||
Sbjct: 145653 actgagcattcttagacttc 145634
to top
>ref|NM_031019.1| Rattus norvegicus corticotropin releasing hormone (Crh), mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 cttctccttttctttgcctt 420
           ||||||||||||||||||||
Sbjct: 66  cttctccttttctttgcctt 47
to top
>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 462    gcagggcatgcatttgccccgcag 485
              |||||||| |||||||||||||||
Sbjct: 105880 gcagggcaagcatttgccccgcag 105857
to top
>gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome 12, complete
            sequence
          Length = 216500

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 3679 atttgccccgcaggcagatc 3660
to top
>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 462   gcagggcatgcatttgccccgcag 485
             |||||||| |||||||||||||||
Sbjct: 87470 gcagggcaagcatttgccccgcag 87493
to top
>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   aagaacaggtaacatagcac 203
             ||||||||||||||||||||
Sbjct: 16611 aagaacaggtaacatagcac 16630
to top
>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aagaacaggtaacatagcac 203
              ||||||||||||||||||||
Sbjct: 114457 aagaacaggtaacatagcac 114438
to top
>emb|AL591146.21| Mouse DNA sequence from clone RP23-252E4 on chromosome 11 Contains the 3'
              end of the Myo1d gene for myosin ID, two novel genes, the
              Cdk5r gene for cyclin-dependent kinase 5 regulatory subunit
              (p35), the Psmd11 gene for non-ATPase proteasome (prosome,
              macropain) 26S subunit 11, the Zfp207 gene for zinc finger
              protein 207 and the 3' end of the Rhbdl4 gene for rhomboid
              veinlet-like 4 (Drosophila), complete sequence
          Length = 195208

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    ttaaatgtgttctacttccc 375
              ||||||||||||||||||||
Sbjct: 142893 ttaaatgtgttctacttccc 142874
to top
>gb|AC090233.16| Homo sapiens chromosome 18, clone RP11-675P24, complete sequence
          Length = 167895

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tacatcagccagatgttggc 265
             ||||||||||||||||||||
Sbjct: 42225 tacatcagccagatgttggc 42244
to top
>dbj|AK036602.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830139E23 product:hypothetical protein,
            full insert sequence
          Length = 4421

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 1861 atttgccccgcaggcagatc 1842
to top
>gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone
              BACR05B13, complete sequence
          Length = 168641

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 642    gacttctctgcttctgcctc 661
              ||||||||||||||||||||
Sbjct: 116677 gacttctctgcttctgcctc 116696
to top
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence
          Length = 222209

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    atttgccccgcaggcagatc 492
              ||||||||||||||||||||
Sbjct: 205338 atttgccccgcaggcagatc 205319
to top
>dbj|AK032455.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430549M02 product:hypothetical
            protein, full insert sequence
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 1827 atttgccccgcaggcagatc 1808
to top
>dbj|AK033213.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030464M21 product:hypothetical
            protein, full insert sequence
          Length = 2364

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 1818 atttgccccgcaggcagatc 1799
to top
>gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmids 9669, 8334, 8199, and
             lambda clone 1160
          Length = 50849

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   gtaagaaaaaagaatgaagt 225
             ||||||||||||||||||||
Sbjct: 49932 gtaagaaaaaagaatgaagt 49951
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 680    tctcaagctcggcttgcttg 699
              ||||||||||||||||||||
Sbjct: 552964 tctcaagctcggcttgcttg 552945
to top
>emb|X03036.1|RNCRFR Rat mRNA for corticotropin-releasing factor precursor (prepro-CRF)
          Length = 1195

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 cttctccttttctttgcctt 420
           ||||||||||||||||||||
Sbjct: 64  cttctccttttctttgcctt 45
to top
>gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42 of 83 of the complete
              sequence
          Length = 266175

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 642    gacttctctgcttctgcctc 661
              ||||||||||||||||||||
Sbjct: 203867 gacttctctgcttctgcctc 203848
to top
>gb|AY713445.1| Feline immunodeficiency virus clone pOma3, complete genome
          Length = 9751

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 aacatagcacaggtaagaaa 213
           ||||||||||||||||||||
Sbjct: 850 aacatagcacaggtaagaaa 869
to top
>gb|BC049940.1| Mus musculus RIKEN cDNA 2810002I04 gene, mRNA (cDNA clone MGC:54815
            IMAGE:6305959), complete cds
          Length = 2024

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  atttgccccgcaggcagatc 492
            ||||||||||||||||||||
Sbjct: 1837 atttgccccgcaggcagatc 1818
to top
>gb|U56928.1|FIU56928 Feline immunodeficiency virus strain FIV-Oma proviral DNA, complete
           sequence
          Length = 9745

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 aacatagcacaggtaagaaa 213
           ||||||||||||||||||||
Sbjct: 844 aacatagcacaggtaagaaa 863
to top
>gb|M54987.1|RATCRH Rat corticotropin releasing hormone (CRH) gene, complete cds
          Length = 2432

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 cttctccttttctttgcctt 420
           ||||||||||||||||||||
Sbjct: 402 cttctccttttctttgcctt 383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,419,322
Number of Sequences: 3902068
Number of extensions: 6419322
Number of successful extensions: 142282
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142073
Number of HSP's gapped (non-prelim): 208
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top