>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC13III)
          Length = 320

 Score =  170 bits (431), Expect = 3e-42
 Identities = 82/96 (85%), Positives = 84/96 (87%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG
Sbjct: 225 GLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMG 284

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 350
            KWIF         AYYRR+RWSVLKSRKLVLDVVN
Sbjct: 285 FKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320

>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC18I) (Fragment)
          Length = 260

 Score =  169 bits (429), Expect = 5e-42
 Identities = 81/96 (84%), Positives = 84/96 (87%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG
Sbjct: 165 GLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMG 224

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 350
            KWIF         AYYRR+RWSVLKSRKLVLDVVN
Sbjct: 225 FKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260

>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 332

 Score =  114 bits (285), Expect = 2e-25
 Identities = 51/93 (54%), Positives = 68/93 (73%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GL++NPYFPG  IAM ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG
Sbjct: 220 GLNFNPYFPGTGIAMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMG 279

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 359
           +K +           Y +R +W+ LKSRK+V D
Sbjct: 280 MKVLVVTSVLFALSVYVKRYKWAWLKSRKIVYD 312

>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 309

 Score =  105 bits (263), Expect = 9e-23
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           G +YNPYFPGG+IAM ++L D  +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G
Sbjct: 211 GSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLG 270

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 359
           +K +           + ++ +W+ +K+RK V +
Sbjct: 271 LKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303

>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 292

 Score =  105 bits (261), Expect = 1e-22
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           G +YNPYFPGG+IAM ++L D  +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G
Sbjct: 196 GANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLG 255

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 359
           +K +           + ++ +W+ +KSRK+V +
Sbjct: 256 LKAMIVLSSLYLLSVWVKKFKWASIKSRKIVFN 288

>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 95.9 bits (237), Expect = 9e-20
 Identities = 45/90 (50%), Positives = 59/90 (65%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GL++NPYFPG AI M   +    +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG
Sbjct: 230 GLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMG 289

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 368
           +K +             +R +WSVLKSRKL
Sbjct: 290 LKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319

>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 95.9 bits (237), Expect = 9e-20
 Identities = 45/90 (50%), Positives = 60/90 (66%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GL++NPYFPG AIAM   +    +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG
Sbjct: 230 GLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMG 289

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 368
           +K +             +R +WSVLKSRKL
Sbjct: 290 LKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319

>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome|
           c-1)
          Length = 241

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 45/90 (50%), Positives = 60/90 (66%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           GL++NPYFPG AI M   + +  +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG
Sbjct: 146 GLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMG 205

Query: 457 VKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 368
           +K +             +R +WSVLKSRKL
Sbjct: 206 LKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 235

>CY1_EUGGR (P20114) Cytochrome c1, heme protein|
          Length = 243

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 44/93 (47%), Positives = 51/93 (54%)
 Frame = -1

Query: 628 YNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKW 449
           YNPYF GG I MP  L D  IEYEDGTPA+  QM KDV  FL W + P  +ERKL+G K 
Sbjct: 148 YNPYFHGGIIGMPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKT 207

Query: 448 IFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 350
           I           YY R    + +SR+L     N
Sbjct: 208 IATLAVIAVSSGYYNRFLSGLWRSRRLAFRPFN 240

>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]|
          Length = 687

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 37/60 (61%), Positives = 43/60 (71%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           G +YN YFPG AI MPK L DG + Y+DG+PAT AQ  KDV +FL W AEP ME RK +G
Sbjct: 602 GSYYNKYFPGHAIKMPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661

>CY1_RHORU (P23135) Cytochrome c1 precursor|
          Length = 272

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = -1

Query: 631 HYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 452
           ++N YFPG AI+MP  LMD  I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K
Sbjct: 188 YFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247

>CY1_RHOVI (P81379) Cytochrome c1 precursor|
          Length = 282

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 31/60 (51%), Positives = 38/60 (63%)
 Frame = -1

Query: 637 GLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 458
           G  YN YFPG  I M   + DG + Y DGTP T+ Q  KDV +FL WAAEP ++ RK +G
Sbjct: 193 GSFYNKYFPGHIIGMTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252

>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 32/85 (37%), Positives = 42/85 (49%)
 Frame = -1

Query: 634 LHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGV 455
           L++N  F G  I M   L D  + YEDGTPAT  QM  DV +FL W AEP+M +RK +G 
Sbjct: 360 LYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGF 419

Query: 454 KWIFXXXXXXXXXAYYRRMRWSVLK 380
             +              +  W  +K
Sbjct: 420 VSVIFLIVLAALLYLTNKKLWQPIK 444

>CY1_RHOCA (P08501) Cytochrome c1 precursor|
          Length = 279

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 31/80 (38%), Positives = 41/80 (51%)
 Frame = -1

Query: 610 GGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXX 431
           G    MP  L+D  + YEDGTPAT  QM +DV +FL WAAEP++  RK MG+  +     
Sbjct: 199 GSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGL 258

Query: 430 XXXXXAYYRRMRWSVLKSRK 371
                    +  W+  K  K
Sbjct: 259 LSVMLYLTNKRLWAPYKGHK 278

>CY1_RHOSH (Q02760) Cytochrome c1 precursor|
          Length = 285

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 40/80 (50%)
 Frame = -1

Query: 610 GGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXX 431
           G  IAMP  LMD  +EY DG  A+   M +DV +FL WAAEP++  RK  G   +     
Sbjct: 202 GSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTV 261

Query: 430 XXXXXAYYRRMRWSVLKSRK 371
                    +  W+ +K +K
Sbjct: 262 LSVLLYLTNKRLWAGVKGKK 281

>NCAH_DROME (P42325) Neurocalcin homolog (DrosNCa)|
          Length = 189

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 234 GTISFVFFLCCKSISLKGAV--IFEYFFAS*YLNGTNILLTEELMKFINALY 85
           GTI F  FLC  S++ +G +    ++ F+   L+G   +  +E+++ + A+Y
Sbjct: 77  GTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIY 128

>IMB3_MOUSE (Q8BKC5) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein|
           5) (RanBP5)
          Length = 1097

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 92  AFMNFINSSVRSMLVPFRYQLAKKYSKITAPLREMLLQQRKKTKEIVPKV*WETTRVAKY 271
           A +NF     +S+L+P+   L K    I     + L+Q  K TK ++ +V      VA  
Sbjct: 465 ALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQ--KGTKLVLEQVVTSIASVADT 522

Query: 272 TTES--PYFDRF 301
             E   PY+D F
Sbjct: 523 AEEKFVPYYDLF 534

>IMB3_HUMAN (O00410) Importin beta-3 (Karyopherin beta-3) (Ran-binding protein|
           5) (RanBP5)
          Length = 1097

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 92  AFMNFINSSVRSMLVPFRYQLAKKYSKITAPLREMLLQQRKKTKEIVPKV*WETTRVAKY 271
           A +NF     +S+L+P+   L K    I     + L+Q  K TK ++ +V      VA  
Sbjct: 465 ALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQ--KGTKLVLEQVVTSIASVADT 522

Query: 272 TTES--PYFDRF 301
             E   PY+D F
Sbjct: 523 AEEKFVPYYDLF 534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,217,649
Number of Sequences: 219361
Number of extensions: 1852094
Number of successful extensions: 4633
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)