ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16n11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466219.1| Oryza sativa (japonica cultivar-group), mRNA 311 2e-81
2dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 2e-81
3gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence 192 1e-45
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
6gb|AY109813.1| Zea mays CL4777_1 mRNA sequence 98 4e-17
7gb|BT017593.1| Zea mays clone EL01N0430H01.c mRNA sequence 50 0.009
8gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 46 0.14
9gb|AC118688.10| Mus musculus chromosome 5, clone RP23-302F24, co... 44 0.56
10gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosom... 44 0.56
11dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 44 0.56
12gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.56
13gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map... 42 2.2
14gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 42 2.2
15ref|XM_743999.1| Aspergillus fumigatus Af293 integral peroxisoma... 42 2.2
16gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, compl... 42 2.2
17gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosom... 42 2.2
18dbj|AK086631.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 2.2
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.2
21dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
22dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
23gb|BT016822.1| Zea mays clone Contig655 mRNA sequence 40 8.8
24gb|AY704421.1| Gossypium anomalum clone 9G pathogenesis-related ... 40 8.8
25gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosom... 40 8.8
26gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosom... 40 8.8
27gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 8.8
28gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, co... 40 8.8
29gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome... 40 8.8
30ref|XM_382838.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 8.8
31ref|XM_739424.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 8.8
32emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 8.8
33emb|CR388387.10| Zebrafish DNA sequence from clone DKEY-260J18 i... 40 8.8
34gb|AC092068.2| Homo sapiens chromosome 19 clone CTC-265F19, comp... 40 8.8
35gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 40 8.8
36dbj|AK054105.1| Mus musculus 2 days pregnant adult female oviduc... 40 8.8
37gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome... 40 8.8
38ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819 ... 40 8.8
39emb|CR749778.14| Zebrafish DNA sequence from clone DKEY-229D23 i... 40 8.8
40gb|AY104803.1| Zea mays PCO064157 mRNA sequence 40 8.8
41gb|AC006275.1|AC006275 Homo sapiens chromosome 19, cosmid R32203... 40 8.8
42gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, comple... 40 8.8 
>ref|XM_466219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  311 bits (157), Expect = 2e-81
 Identities = 376/449 (83%)
 Strand = Plus / Minus

                                                                       
Query: 194 cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 253
           ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 973 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 914

                                                                       
Query: 254 tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 313
           || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 913 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 854

                                                                       
Query: 314 tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccaccatg 373
           ||||||||||| ||   ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 853 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccaccatg 794

                                                                       
Query: 374 gcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagtt 433
              |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 793 ttggtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagat 734

                                                                       
Query: 434 atctggtcctctgaatatcccatagcatcatgaacctccatttctctatcatgcacctcc 493
           || || || |||| |||||| ||||||||||| ||||||  ||||||  ||||  | |||
Sbjct: 733 atttgctcttctgtatatccaatagcatcatgcacctcctgttctctggcatgtgcttcc 674

                                                                       
Query: 494 ttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacagaa 553
           |||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||| 
Sbjct: 673 ttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacagag 614

                                                                       
Query: 554 tcaaccacatcaagcaacgtttcgagctgcttagcttgaatcctagggtccttggtcttg 613
           ||||| |||||||||||  |||| || |||||  |||| | ||   ||||||||||| | 
Sbjct: 613 tcaacaacatcaagcaaattttcaagttgcttctcttggagccatcggtccttggtcata 554

                                        
Query: 614 ttatcgaaaagaaccactctgtttttgca 642
           ||||| || ||||| ||||||||||||||
Sbjct: 553 ttatcaaagagaacaactctgtttttgca 525
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>dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D08, full
            insert sequence
          Length = 1307

 Score =  311 bits (157), Expect = 2e-81
 Identities = 376/449 (83%)
 Strand = Plus / Minus

                                                                        
Query: 194  cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 253
            ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 1093 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 1034

                                                                        
Query: 254  tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 313
            || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 1033 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 974

                                                                        
Query: 314  tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccaccatg 373
            ||||||||||| ||   ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 973  tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccaccatg 914

                                                                        
Query: 374  gcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagtt 433
               |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 913  ttggtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagat 854

                                                                        
Query: 434  atctggtcctctgaatatcccatagcatcatgaacctccatttctctatcatgcacctcc 493
            || || || |||| |||||| ||||||||||| ||||||  ||||||  ||||  | |||
Sbjct: 853  atttgctcttctgtatatccaatagcatcatgcacctcctgttctctggcatgtgcttcc 794

                                                                        
Query: 494  ttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacagaa 553
            |||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||| 
Sbjct: 793  ttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacagag 734

                                                                        
Query: 554  tcaaccacatcaagcaacgtttcgagctgcttagcttgaatcctagggtccttggtcttg 613
            ||||| |||||||||||  |||| || |||||  |||| | ||   ||||||||||| | 
Sbjct: 733  tcaacaacatcaagcaaattttcaagttgcttctcttggagccatcggtccttggtcata 674

                                         
Query: 614  ttatcgaaaagaaccactctgtttttgca 642
            ||||| || ||||| ||||||||||||||
Sbjct: 673  ttatcaaagagaacaactctgtttttgca 645
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>gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence
          Length = 1374

 Score =  192 bits (97), Expect = 1e-45
 Identities = 315/387 (81%), Gaps = 3/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 184 cgccagcctccggaactcctcgttttcctcctgggccctctcgagcctctccttgagctt 243
           ||||| |||||||||||| || ||||||   || ||  ||| ||| ||||||||||||||
Sbjct: 379 cgccatcctccggaactcatcattttccatttgagctttcttgaggctctccttgagctt 438

                                                                       
Query: 244 gcggatctcctcgtcggatttcaccctggcctctgccgccaccctctctgcttctagcct 303
             |||||||| | || ||||||| ||| || ||   ||||||| |||| ||||| |||||
Sbjct: 439 ctggatctccgcttctgatttcagcctagcttcgtacgccaccttctcagcttccagcct 498

                                                                       
Query: 304 tgcattctgttcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttc 363
           ||| ||||||||||||||||||||   ||||| ||||||||| |||   || | ||||||
Sbjct: 499 tgcgttctgttcttccatgagctgctgttgcaacttctccacagtgcagtttaacttttc 558

                                                                       
Query: 364 ctccaccatggcagtaatgtttgcaagctgttcatcccgagttctgtggatctccttctt 423
           ||| ||||||   || ||||  |||||||||||||||| |||||| || |||||||| ||
Sbjct: 559 ctcgaccatgttggttatgtgcgcaagctgttcatccctagttctatgaatctccttttt 618

                                                                       
Query: 424 caattcagttatctggtcctctgaatatcccatagcatcatgaacctccatttctctatc 483
           |||||||| |||||| || ||||||||||||   |    ||| |||||  ||||||||||
Sbjct: 619 caattcagatatctgctcatctgaatatccc---gaggtatgcacctctttttctctatc 675

                                                                       
Query: 484 atgcacctccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgc 543
           |||||||||||| | || ||||| ||||||||||| |||||| ||||||||||| |||||
Sbjct: 676 atgcacctccttgatgctagtgaacatttgatctgaaaatggttttcctccattttttgc 735

                                      
Query: 544 actaacagaatcaaccacatcaagcaa 570
           || ||| ||||| || ||||| |||||
Sbjct: 736 acaaactgaatccactacatcgagcaa 762
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                            
Query: 194      cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 253
                ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 21107436 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 21107377

                                                                            
Query: 254      tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 313
                || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 21107376 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 21107317

                                                                         
Query: 314      tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccacc 370
                ||||||||||| ||   ||||||||| || || ||||||||||||||||||||||||
Sbjct: 21107316 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccacc 21107260



 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                            
Query: 377      gtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagttatc 436
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| 
Sbjct: 21106196 gtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagatatt 21106137

                                                    
Query: 437      tggtcctctgaatatcccatagcatcatgaacctcc 472
                || || |||| |||||| ||||||||||| ||||||
Sbjct: 21106136 tgctcttctgtatatccaatagcatcatgcacctcc 21106101



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 125/151 (82%)
 Strand = Plus / Minus

                                                                            
Query: 492      ccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacag 551
                |||||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||
Sbjct: 21106010 ccttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacag 21105951

                                                                            
Query: 552      aatcaaccacatcaagcaacgtttcgagctgcttagcttgaatcctagggtccttggtct 611
                | ||||| |||||||||||  |||| || |||||  |||| | ||   ||||||||||| 
Sbjct: 21105950 agtcaacaacatcaagcaaattttcaagttgcttctcttggagccatcggtccttggtca 21105891

                                               
Query: 612      tgttatcgaaaagaaccactctgtttttgca 642
                | ||||| || ||||| ||||||||||||||
Sbjct: 21105890 tattatcaaagagaacaactctgtttttgca 21105860
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>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                         
Query: 194   cggaactcctcgttttcctcctgggccctctcgagcctctccttgagcttgcggatctcc 253
             ||||| ||||| ||||| |  |||||| ||||||| | ||  ||||||||||||||||||
Sbjct: 14152 cggaattcctcattttcttgttgggccttctcgaggcgctttttgagcttgcggatctcc 14093

                                                                         
Query: 254   tcgtcggatttcaccctggcctctgccgccaccctctctgcttctagccttgcattctgt 313
             || || |||   | ||| || || || |||| ||||||||||||||||||||||||||||
Sbjct: 14092 tcatctgatcggagcctagcttcagctgccaacctctctgcttctagccttgcattctgt 14033

                                                                      
Query: 314   tcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttcctccacc 370
             ||||||||||| ||   ||||||||| || || ||||||||||||||||||||||||
Sbjct: 14032 tcttccatgagttgctgttgcagcttgtcaacagtgatattcagcttttcctccacc 13976



 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                         
Query: 377   gtaatgtttgcaagctgttcatcccgagttctgtggatctccttcttcaattcagttatc 436
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| 
Sbjct: 12912 gtaatgtttgcaagctgttcatcccgagttctctggatctcctttttcaattcagatatt 12853

                                                 
Query: 437   tggtcctctgaatatcccatagcatcatgaacctcc 472
             || || |||| |||||| ||||||||||| ||||||
Sbjct: 12852 tgctcttctgtatatccaatagcatcatgcacctcc 12817



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 125/151 (82%)
 Strand = Plus / Minus

                                                                         
Query: 492   ccttaaggcgagtgagcatttgatctgtaaatgggtttcctccattatttgcactaacag 551
             |||||| || || |||||||||||||| |||||| |||||||||||||||| | | ||||
Sbjct: 12726 ccttaatgcaagcgagcatttgatctgaaaatggctttcctccattatttgtattcacag 12667

                                                                         
Query: 552   aatcaaccacatcaagcaacgtttcgagctgcttagcttgaatcctagggtccttggtct 611
             | ||||| |||||||||||  |||| || |||||  |||| | ||   ||||||||||| 
Sbjct: 12666 agtcaacaacatcaagcaaattttcaagttgcttctcttggagccatcggtccttggtca 12607

                                            
Query: 612   tgttatcgaaaagaaccactctgtttttgca 642
             | ||||| || ||||| ||||||||||||||
Sbjct: 12606 tattatcaaagagaacaactctgtttttgca 12576
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>gb|AY109813.1| Zea mays CL4777_1 mRNA sequence
          Length = 1239

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 181/225 (80%)
 Strand = Plus / Minus

                                                                        
Query: 184  cgccagcctccggaactcctcgttttcctcctgggccctctcgagcctctccttgagctt 243
            ||||| |||||||||||| || ||||||   || ||  ||| ||| ||||||||||||||
Sbjct: 1068 cgccatcctccggaactcatcattttccatttgagctttcttgaggctctccttgagctt 1009

                                                                        
Query: 244  gcggatctcctcgtcggatttcaccctggcctctgccgccaccctctctgcttctagcct 303
              |||||||| | || ||||||| ||| || ||   ||||||| |||| ||||| |||||
Sbjct: 1008 ctggatctccgcttctgatttcagcctagcttcgtacgccaccttctcagcttccagcct 949

                                                                        
Query: 304  tgcattctgttcttccatgagctgaacttgcagcttctccaccgtgatattcagcttttc 363
            ||| ||||||||||||||||||||   ||||| ||||||||| |||   || | ||||||
Sbjct: 948  tgcgttctgttcttccatgagctgctgttgcaacttctccacagtgcagtttaacttttc 889

                                                         
Query: 364  ctccaccatggcagtaatgtttgcaagctgttcatcccgagttct 408
            ||| ||||||   || ||||  |||||||||||||||| ||||||
Sbjct: 888  ctcgaccatgttggttatgtgcgcaagctgttcatccctagttct 844



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 477 ctctatcatgcacctccttaaggcgagtgagcatttgatctgtaaatgggtttcctcca 535
           ||||||||||||||||||| | || ||||| ||||||||||| |||||| |||||||||
Sbjct: 778 ctctatcatgcacctccttgatgctagtgaacatttgatctgaaaatggttttcctcca 720
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>gb|BT017593.1| Zea mays clone EL01N0430H01.c mRNA sequence
          Length = 401

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 387 caagctgttcatcccgagttctgtggatctccttcttcaat 427
           ||||||||||||||| |||||| || |||||||| ||||||
Sbjct: 41  caagctgttcatccctagttctatgaatctcctttttcaat 1
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 233     tccttgagcttgcggatctcctcgtcg 259
               |||||||||||||||||| ||||||||
Sbjct: 3883107 tccttgagcttgcggatcacctcgtcg 3883081
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>gb|AC118688.10| Mus musculus chromosome 5, clone RP23-302F24, complete sequence
          Length = 176001

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 518    gtaaatgggtttcctccattat 539
              ||||||||||||||||||||||
Sbjct: 129890 gtaaatgggtttcctccattat 129911
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>gb|AC123558.5| Mus musculus BAC clone RP23-336N16 from chromosome 5, complete sequence
          Length = 211763

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 518    gtaaatgggtttcctccattat 539
              ||||||||||||||||||||||
Sbjct: 210217 gtaaatgggtttcctccattat 210196
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 333     gcagcttctccaccgtgatatt 354
               ||||||||||||||||||||||
Sbjct: 4993467 gcagcttctccaccgtgatatt 4993488
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 225     cgagcctctccttgagcttgcggatc 250
               ||||||| ||||||||||||||||||
Sbjct: 5057051 cgagcctgtccttgagcttgcggatc 5057026
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>gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map MAP_LOC, complete
              sequence
          Length = 125813

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    ttcctccattatttgcactaa 548
              |||||||||||||||||||||
Sbjct: 114684 ttcctccattatttgcactaa 114704
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 528   ttcctccattatttgcactaa 548
             |||||||||||||||||||||
Sbjct: 14259 ttcctccattatttgcactaa 14279
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>ref|XM_743999.1| Aspergillus fumigatus Af293 integral peroxisomal membrane protein
           (Afu7g04160) partial mRNA
          Length = 2028

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 226 gagcctctccttgagcttgcggatctcct 254
           |||||||||||||||||| ||||| ||||
Sbjct: 736 gagcctctccttgagcttacggatttcct 764
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>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence
          Length = 210514

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 527   tttcctccattatttgcacta 547
             |||||||||||||||||||||
Sbjct: 21689 tttcctccattatttgcacta 21669
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>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete
             sequence
          Length = 170988

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 527   tttcctccattatttgcacta 547
             |||||||||||||||||||||
Sbjct: 76133 tttcctccattatttgcacta 76113
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>dbj|AK086631.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930042P12 product:unclassifiable, full
            insert sequence
          Length = 2452

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 527  tttcctccattatttgcacta 547
            |||||||||||||||||||||
Sbjct: 2248 tttcctccattatttgcacta 2268
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 308     ttctgttcttccatgagctga 328
               |||||||||||||||||||||
Sbjct: 6835781 ttctgttcttccatgagctga 6835801



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 308     ttctgttcttccatgagctga 328
               |||||||||||||||||||||
Sbjct: 6621452 ttctgttcttccatgagctga 6621432
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 162     gaatagcgcacttgttggtcgccgccagc 190
               |||| ||||||||| ||||||||||||||
Sbjct: 4475938 gaattgcgcacttgctggtcgccgccagc 4475966
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>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0002E10
          Length = 140486

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   ttctgttcttccatgagctga 328
             |||||||||||||||||||||
Sbjct: 86500 ttctgttcttccatgagctga 86520
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>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0003D23
          Length = 151604

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 308   ttctgttcttccatgagctga 328
             |||||||||||||||||||||
Sbjct: 54799 ttctgttcttccatgagctga 54779
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>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence
          Length = 1636

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 agcttgcggatctcctcgtc 258
           ||||||||||||||||||||
Sbjct: 374 agcttgcggatctcctcgtc 355
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>gb|AY704421.1| Gossypium anomalum clone 9G pathogenesis-related protein 10 (PR10)
           gene, partial cds
          Length = 427

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 tttgatctgtaaatgggttt 529
           ||||||||||||||||||||
Sbjct: 212 tttgatctgtaaatgggttt 231
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>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence
          Length = 168853

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    attcagttatctggtcctct 445
              ||||||||||||||||||||
Sbjct: 105682 attcagttatctggtcctct 105701
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>gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosome 8, complete sequence
          Length = 214894

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   tgcttctagccttgcattct 311
             ||||||||||||||||||||
Sbjct: 54850 tgcttctagccttgcattct 54869
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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 535   attatttgcactaacagaatcaac 558
             |||||||||||||||||| |||||
Sbjct: 65273 attatttgcactaacagactcaac 65296
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>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence
          Length = 145019

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   tcagcttttcctccaccatg 373
             ||||||||||||||||||||
Sbjct: 96007 tcagcttttcctccaccatg 95988
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>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence
          Length = 218929

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   attcagttatctggtcctct 445
             ||||||||||||||||||||
Sbjct: 56738 attcagttatctggtcctct 56757
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>ref|XM_382838.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02662.1)
           partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 ctgtggatctccttcttcaa 426
           ||||||||||||||||||||
Sbjct: 956 ctgtggatctccttcttcaa 975
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>ref|XM_739424.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000531.01.0)
            partial mRNA
          Length = 2706

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 534  cattatttgcactaacagaatcaa 557
            |||||||||||||| |||||||||
Sbjct: 1048 cattatttgcactaccagaatcaa 1025
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 535   attatttgcactaacagaatcaac 558
             |||||||||||||||||| |||||
Sbjct: 61964 attatttgcactaacagactcaac 61987
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>emb|CR388387.10| Zebrafish DNA sequence from clone DKEY-260J18 in linkage group 20,
           complete sequence
          Length = 138115

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 552 aatcaaccacatcaagcaacgttt 575
           ||||| ||||||||||||||||||
Sbjct: 645 aatcatccacatcaagcaacgttt 668
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>gb|AC092068.2| Homo sapiens chromosome 19 clone CTC-265F19, complete sequence
          Length = 75782

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   cctcctgggccctctcgagcctct 233
             ||||||||| ||||||||||||||
Sbjct: 45157 cctcctgggacctctcgagcctct 45134
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>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 179854

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    attcagcttttcctccacca 371
              ||||||||||||||||||||
Sbjct: 106937 attcagcttttcctccacca 106918
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>dbj|AK054105.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230019K20
            product:unclassifiable, full insert sequence
          Length = 1890

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  attcagttatctggtcctct 445
            ||||||||||||||||||||
Sbjct: 1140 attcagttatctggtcctct 1159
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>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence
          Length = 253762

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 343    caccgtgatattcagcttttcctc 366
              |||||| |||||||||||||||||
Sbjct: 125424 caccgtaatattcagcttttcctc 125447
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>ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819
           (ENSANGG00000014330), partial mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 352 attcagcttttcctccaccatggcagta 379
           ||||||||||||||||||| ||||||||
Sbjct: 102 attcagcttttcctccacc-tggcagta 76
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>emb|CR749778.14| Zebrafish DNA sequence from clone DKEY-229D23 in linkage group 20,
             complete sequence
          Length = 41352

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 552   aatcaaccacatcaagcaacgttt 575
             ||||| ||||||||||||||||||
Sbjct: 39997 aatcatccacatcaagcaacgttt 40020
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>gb|AY104803.1| Zea mays PCO064157 mRNA sequence
          Length = 1631

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 agcttgcggatctcctcgtc 258
           ||||||||||||||||||||
Sbjct: 389 agcttgcggatctcctcgtc 370
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>gb|AC006275.1|AC006275 Homo sapiens chromosome 19, cosmid R32203, complete sequence
          Length = 39852

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   cctcctgggccctctcgagcctct 233
             ||||||||| ||||||||||||||
Sbjct: 23768 cctcctgggacctctcgagcctct 23745
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>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence
          Length = 201556

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tgcttctagccttgcattct 311
             ||||||||||||||||||||
Sbjct: 21059 tgcttctagccttgcattct 21040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,476,498
Number of Sequences: 3902068
Number of extensions: 5476498
Number of successful extensions: 108777
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108527
Number of HSP's gapped (non-prelim): 237
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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