ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17c10 |
|---|---|
| Clone Library Name | barley_pub |
>MIOX_ORYSA (Q5Z8T3) Probable inositol oxygenase (EC 1.13.99.1) (Myo-inositol| oxygenase) Length = 308 Score = 304 bits (779), Expect = 1e-82 Identities = 137/150 (91%), Positives = 142/150 (94%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWGHD 495 PQW+VVGDTFPVGCAFDECNVHFKY KENPDY NP+ NTKFG YSEGCGLDNVLMSWGHD Sbjct: 159 PQWSVVGDTFPVGCAFDECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHD 218 Query: 494 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLY 315 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAY HLMN+EDKENLKWL VFNKYDLY Sbjct: 219 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLY 278 Query: 314 SKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 SKS+ RIDVEKVKPYYMSLIEKYFP KL+W Sbjct: 279 SKSNERIDVEKVKPYYMSLIEKYFPAKLRW 308
>MIOX5_ARATH (Q9FJU4) Inositol oxygenase 5 (EC 1.13.99.1) (Myo-inositol| oxygenase 5) (AtMIOX5) Length = 314 Score = 287 bits (735), Expect = 2e-77 Identities = 128/150 (85%), Positives = 139/150 (92%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWGHD 495 PQWAVVGDTFPVGCAFDE NVH KY ENPD++NP++NTK G+YSEGCGL+NVLMSWGHD Sbjct: 165 PQWAVVGDTFPVGCAFDESNVHHKYFMENPDFNNPKYNTKAGIYSEGCGLENVLMSWGHD 224 Query: 494 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLY 315 DYMYLVAKEN +TLPS GLFIIRYHSFYPLHK GAYTHLMNEEDKENLKWLHVFNKYDLY Sbjct: 225 DYMYLVAKENGSTLPSPGLFIIRYHSFYPLHKAGAYTHLMNEEDKENLKWLHVFNKYDLY 284 Query: 314 SKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 SKS V ++VEKVKPYYMSLI+KYFPE L+W Sbjct: 285 SKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314
>MIOX4_ARATH (Q8H1S0) Inositol oxygenase 4 (EC 1.13.99.1) (Myo-inositol| oxygenase 4) (AtMIOX4) Length = 317 Score = 281 bits (720), Expect = 1e-75 Identities = 126/150 (84%), Positives = 135/150 (90%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWGHD 495 PQWAVVGDTFPVGCAFDE NVH KY ENPD+HN +NTK G+YSEGCGL+NV+MSWGHD Sbjct: 168 PQWAVVGDTFPVGCAFDESNVHHKYFVENPDFHNETYNTKNGIYSEGCGLNNVMMSWGHD 227 Query: 494 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLY 315 DYMYLVAKEN +TLPSAG FIIRYHSFYPLH G YTHLMNEEDKENLKWLHVFNKYDLY Sbjct: 228 DYMYLVAKENGSTLPSAGQFIIRYHSFYPLHTAGEYTHLMNEEDKENLKWLHVFNKYDLY 287 Query: 314 SKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 SKS V +DVEKVKPYYMSLI+KYFPE L+W Sbjct: 288 SKSKVHVDVEKVKPYYMSLIKKYFPENLRW 317
>MIOX1_ARATH (Q8L799) Inositol oxygenase 1 (EC 1.13.99.1) (Myo-inositol| oxygenase 1) (AtMIOX1) Length = 311 Score = 275 bits (702), Expect = 1e-73 Identities = 122/150 (81%), Positives = 134/150 (89%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWGHD 495 PQWAVVGDTFPVGCAFDE VH KY KENPDY NP +N+K+G+Y+EGCGLDNVLMSWGHD Sbjct: 162 PQWAVVGDTFPVGCAFDESIVHHKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHD 221 Query: 494 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLY 315 DYMYLVAKEN+TTLPSAGLFIIRYHSFY LHK AY HLMN ED+EN+KWL VFNKYDLY Sbjct: 222 DYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAYKHLMNNEDRENMKWLKVFNKYDLY 281 Query: 314 SKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 SKS VR++VE+VKPYY+SL KYFP KLKW Sbjct: 282 SKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311
>MIOX2_ARATH (O82200) Inositol oxygenase 2 (EC 1.13.99.1) (Myo-inositol| oxygenase 2) (AtMIOX2) Length = 317 Score = 272 bits (695), Expect = 8e-73 Identities = 121/150 (80%), Positives = 134/150 (89%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWGHD 495 PQWAVVGDTFPVGC FD N+H KY K N D +NP++NTK GVY+EGCGLDNVLMSWGHD Sbjct: 168 PQWAVVGDTFPVGCTFDSANIHHKYFKGNHDINNPKYNTKNGVYTEGCGLDNVLMSWGHD 227 Query: 494 DYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLY 315 DYMYLVAK+N TTLP AGLFIIRYHSFYPLHK GAYTHLMN+ED+++LKWLHVFNKYDLY Sbjct: 228 DYMYLVAKKNGTTLPHAGLFIIRYHSFYPLHKAGAYTHLMNDEDRDDLKWLHVFNKYDLY 287 Query: 314 SKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 SKS V +DVE+VKPYY+SLI KYFP KLKW Sbjct: 288 SKSKVLVDVEQVKPYYISLINKYFPAKLKW 317
>MIOX_BRARE (Q4V8T0) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| Length = 278 Score = 191 bits (485), Expect = 2e-48 Identities = 88/151 (58%), Positives = 109/151 (72%), Gaps = 1/151 (0%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHFKYLKE-NPDYHNPEFNTKFGVYSEGCGLDNVLMSWGH 498 PQWAVVGDT+PVGC F V E NPD NP NT+FG+Y CGLD VLMSWGH Sbjct: 128 PQWAVVGDTYPVGCKFQNSIVFRNSTFEGNPDGKNPAPNTEFGIYEPQCGLDKVLMSWGH 187 Query: 497 DDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDL 318 D+Y+Y V K NK T+P GL++IR+HSFYP H +G Y HL NE+D++ L W+ FNK+DL Sbjct: 188 DEYLYRVMKFNKCTIPEEGLYMIRFHSFYPWHSNGDYMHLCNEKDQQMLPWVKEFNKFDL 247 Query: 317 YSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 Y+KS+ DVE++KPYY SLI+KY P L+W Sbjct: 248 YTKSTELPDVERLKPYYQSLIDKYCPGVLQW 278
>MIOX_PIG (Q8WN98) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) Length = 282 Score = 170 bits (431), Expect = 3e-42 Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 2/152 (1%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHF--KYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWG 501 PQWAVVGDTFPVGC + +V F ++NPD +P ++T+ G+Y CGL+N LMSWG Sbjct: 132 PQWAVVGDTFPVGCR-PQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHCGLENALMSWG 190 Query: 500 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYD 321 HD+YMY + K NK +LP +IIR+HSFYP H G Y L NE+D L W+ FNK+D Sbjct: 191 HDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPWVQEFNKFD 250 Query: 320 LYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 LY+K S DV++++PYY LI+KY P L W Sbjct: 251 LYTKGSDMPDVDELRPYYQGLIDKYCPGVLCW 282
>MIOX_MOUSE (Q9QXN5) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) Length = 285 Score = 169 bits (429), Expect = 5e-42 Identities = 77/152 (50%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHF--KYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWG 501 PQWAVVGDTFPVGC + +V F ++NPD +P ++T+ G+Y CGL+NVLMSWG Sbjct: 135 PQWAVVGDTFPVGCR-PQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWG 193 Query: 500 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYD 321 HD+Y+Y + K NK +LPS ++IR+HSFYP H G Y L +++D + L W+ FNK+D Sbjct: 194 HDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFD 253 Query: 320 LYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 LY+K DVE ++PYY LI+KY P L W Sbjct: 254 LYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 285
>MIOX_PONPY (Q5REY9) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| Length = 285 Score = 166 bits (419), Expect = 8e-41 Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHF--KYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWG 501 PQWAVVGDTFPVGC + +V F ++NPD +P ++T+ G+Y CGLD VLMSWG Sbjct: 135 PQWAVVGDTFPVGCR-PQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWG 193 Query: 500 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYD 321 HD+YMY V K NK +LP ++IR+HSFYP H Y L +++D L W+ FNK+D Sbjct: 194 HDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGSDYQQLCSQQDLAMLPWVQEFNKFD 253 Query: 320 LYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 LY+K DV+K++PYY LI+KY P L W Sbjct: 254 LYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285
>MIOX_RAT (Q9QXN4) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) Length = 285 Score = 165 bits (418), Expect = 1e-40 Identities = 74/152 (48%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHF--KYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWG 501 PQWAVVGDTFPVGC + +V F ++NPD +P ++T+ G+Y CGL+NVLMSWG Sbjct: 135 PQWAVVGDTFPVGCR-PQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWG 193 Query: 500 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYD 321 HD+Y+Y + K NK +LPS +++R+HSFYP H G Y L +++D + L W+ FNK+D Sbjct: 194 HDEYLYQMMKFNKFSLPSEAFYMVRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFD 253 Query: 320 LYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 LY+K +V+ ++PYY LI+KY P L W Sbjct: 254 LYTKCPDLPEVKSLRPYYQGLIDKYCPGILSW 285
>MIOX_HUMAN (Q9UGB7) Inositol oxygenase (EC 1.13.99.1) (Myo-inositol oxygenase)| (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) Length = 285 Score = 165 bits (417), Expect = 1e-40 Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Frame = -3 Query: 674 PQWAVVGDTFPVGCAFDECNVHF--KYLKENPDYHNPEFNTKFGVYSEGCGLDNVLMSWG 501 PQWAVVGDTFPVGC + +V F ++NPD +P ++T+ G+Y CGLD VLMSWG Sbjct: 135 PQWAVVGDTFPVGCR-PQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWG 193 Query: 500 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYD 321 HD+YMY V K NK +LP ++IR+HSFYP H Y L +++D L W+ FNK+D Sbjct: 194 HDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFD 253 Query: 320 LYSKSSVRIDVEKVKPYYMSLIEKYFPEKLKW 225 LY+K DV+K++PYY LI+KY P L W Sbjct: 254 LYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285
>CSK_CHICK (P41239) Tyrosine-protein kinase CSK (EC 2.7.10.2) (C-SRC kinase)| Length = 450 Score = 32.3 bits (72), Expect = 1.3 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Frame = -3 Query: 530 GLDNVLMSWGHDDYMYLVAKENKTTL---PSAGLFIIRYHSFYPLHKHGAYTHLMNEEDK 360 G+ LM W H + +E L P GLF++R + YP G YT ++ E K Sbjct: 74 GIKLSLMPWFHGK----ITREQAERLLYPPETGLFLVRESTNYP----GDYTLCVSCEGK 125 Query: 359 ENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEKY 246 V + +YS S + ID E M L+E Y Sbjct: 126 -------VEHYRIIYSSSKLSIDEEVYFENLMQLVEHY 156
>SPB1_CRYNE (Q5KM86) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 908 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -3 Query: 428 RYHSFYPLHKHGAYTHLMNEEDKENLKWLHVFNKYDLYSKSSVRIDVEKVKPYYMSLIEK 249 R FY L K Y + K +H+ KYDL SK+ ID+ ++ + EK Sbjct: 12 RLDKFYRLAKEQGY------RARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK 65 Query: 248 YFPE 237 Y P+ Sbjct: 66 YMPK 69
>TOP1_RICPR (Q9ZDK2) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 776 Score = 30.4 bits (67), Expect = 5.1 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -3 Query: 533 CGLDNVLMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYPLHKHGAYTHLMNEEDKEN 354 C ++NV+M D + +A ENK L A II + FY + Y +++ED+E+ Sbjct: 388 CQMENVIM----DLVIANLASENKEYLAKANGSIIAFDGFYKV-----YRESLDDEDEED 438 Query: 353 LKWL 342 K L Sbjct: 439 NKML 442
>GRPE_THEMA (Q9WZV4) Protein grpE (HSP-70 cofactor)| Length = 172 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -3 Query: 389 YTHLMNEEDKENLKWLHVFNKYDLYSKSSV-RIDVEKVKPY 270 Y L+N +KE L +HV K+D + +V R++ E V+ Y Sbjct: 88 YKKLLNVLEKEGLTKIHVGEKFDPFEHEAVERVETEDVEEY 128
>RIN2_HUMAN (Q8WYP3) Ras and Rab interactor 2 (Ras interaction/interference| protein 2) (Ras inhibitor JC265) (Ras association domain family 4) Length = 895 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 362 KENLKWLHVFNKYDL--YSKSSVRIDVEKVKPYYMSLIEKYFPEK 234 KENL+ + N +L ++ + +DVEK+K +M++ + Y PEK Sbjct: 625 KENLQLVRQRNPQELGVFAPTPDFVDVEKIKVKFMTMQKMYSPEK 669 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,961,748 Number of Sequences: 219361 Number of extensions: 1933001 Number of successful extensions: 5147 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5141 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
