ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16n07 |
|---|---|
| Clone Library Name | barley_pub |
>YCR3_YEAST (P25351) Hypothetical transport protein YCR023C| Length = 611 Score = 48.1 bits (113), Expect = 2e-05 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 6/177 (3%) Frame = -1 Query: 644 WAVSSRKYRGLSFTSQEVGTVLAISG-FGVLVYQLLIYPLLAKYAGLVKPFRSAAVLSIL 468 W +S G+ + ++ GT+L+ +G FG V + I+P++ + + FR+ L + Sbjct: 399 WKISG----GIGYEPEQTGTLLSTTGIFGCFVV-IFIFPIVDRNFDCLTIFRTLVKLYPI 453 Query: 467 LLATYPFMANLYGVELK-----VLINIASLLKNMFAATITIACNILQNTAVAQEQRGVAN 303 + P++ L + V + I + +K A + +L + + R V N Sbjct: 454 MYVMVPYVVFLQNERIPSWYTVVYLYIITGIKTFCGALTSPQIMLLIHNSSPLSCRSVIN 513 Query: 302 GISVTLMSIFKAVAPAAAGILFSWAQKNITGLFLPGDQILFWMLNMVSVIGLSLTFK 132 G ++++ + + + P G + SW+Q+N + +W L++ ++ L ++K Sbjct: 514 GATISISASARFIGPLVWGYIMSWSQQNDVA------WVSWWSLSLFCMVALYQSYK 564
>BMR2_BACSU (P39843) Multidrug resistance protein 2 (Multidrug-efflux| transporter 2) Length = 400 Score = 38.1 bits (87), Expect = 0.026 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 2/180 (1%) Frame = -1 Query: 671 TAYLEIFSLWAVSSRKYRGLSFTSQEVGTVLAISGFGVLVYQLLIYPLLAKYAGLVKPFR 492 +AY +FSL+ S K+ FT +++ ++ IS +V Q+L++ L G + + Sbjct: 232 SAYETVFSLF--SDHKF---GFTPKDIAAIITISSIVAVVIQVLLFGKLVNKLGEKRMIQ 286 Query: 491 SAAVLSILLLATYPFMANLYGVELKVLINIAS--LLKNMFAATITIACNILQNTAVAQEQ 318 + +L M+ V L + LL+ A ++ +A Q Sbjct: 287 LCLITGAILAFVSTVMSGFLTVLLVTCFIFLAFDLLRPALTAHLS---------NMAGNQ 337 Query: 317 RGVANGISVTLMSIFKAVAPAAAGILFSWAQKNITGLFLPGDQILFWMLNMVSVIGLSLT 138 +G G++ T S+ PA GILF + P F V ++GL LT Sbjct: 338 QGFVAGMNSTYTSLGNIFGPALGGILFD------LNIHYP-----FLFAGFVMIVGLGLT 386
>PDR15_ARATH (Q7PC81) Putative pleiotropic drug resistance protein 15| Length = 1390 Score = 34.3 bits (77), Expect = 0.37 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Frame = -1 Query: 695 YCVFSLHDTAYLEIFSLWAVSSRKYRGLSFTSQEVGTVLAISGFGVLVYQLLIYPLLAKY 516 +CV + + Y E FS R Y +++ +V + S F ++Y +++YP++ + Sbjct: 1190 FCVATERNVFYRERFS------RMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYH 1243 Query: 515 AGLVKPFRSAAVLSILLLATYPFMANLYGVELKVL---INIASLLKNMFAATITI 360 + K F S + LL + N +G+ L V+ ++IA L++ F A + + Sbjct: 1244 WSVYKVFWSFYSIFCSLL-----IFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNL 1293
>PDR14_ARATH (Q7PC82) Probable pleiotropic drug resistance protein 14| Length = 1392 Score = 33.1 bits (74), Expect = 0.83 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = -1 Query: 632 SRKYRGLSFTSQEVGTVLAISGFGVLVYQLLIYPLLAKYAGLVKPFRSAAVLSILLLATY 453 SR Y +++ +V + S F +VY +++YP++ + + K F S + LL Sbjct: 1207 SRMYNSWAYSLAQVLVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLL--- 1263 Query: 452 PFMANLYGVELKVL---INIASLLKNMFAATITI 360 + N +G+ L V+ ++IA L++ F A + + Sbjct: 1264 --IFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNL 1295
>KINB_BACSU (Q08430) Sporulation kinase B (EC 2.7.13.3)| Length = 429 Score = 33.1 bits (74), Expect = 0.83 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Frame = -1 Query: 614 LSFTSQEVGTVLAISGFGVLVYQLLIYPLLAKYAGLVKPFRSAAVLSILLLATYPFMANL 435 L + S G +A S VL ++LL Y A + + PF ++ IL +PFM+ Sbjct: 77 LFYISTASGLTVAAS---VLCFELLFYEPSAMFVFTLLPF--LIIIPILFQKKWPFMSKA 131 Query: 434 YGVELKVLINIASLLKNMFAATITIACNIL--QNTAVAQEQRGVAN--GISVTLMSIF 273 + L +LI+ + ++ I A NIL Q + + + V+ SV L+SI+ Sbjct: 132 KKLLLSLLISCVEIFLFFASSWILSALNILNFQKSGIFVYEAAVSGLFRSSVLLLSIY 189
>VACHT_BRARE (P59845) Probable vesicular acetylcholine transporter (VAChT)| Length = 493 Score = 32.3 bits (72), Expect = 1.4 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Frame = -1 Query: 548 QLLIYPLLAKY---AGLVKPFRSAAVLSILLLATYPFMANLYGVELKVLINIASL--LKN 384 QLL+ PL + G P ++ L + F N YG L SL L + Sbjct: 96 QLLVNPLSGTFIDRVGYDLPLLIGLLVMFLSTCIFAFAEN-YGT----LFAARSLQGLGS 150 Query: 383 MFAATITIACNILQNTAVAQEQRGVANGISVTLMSIFKAVAPAAAGILFSWAQKNITGLF 204 FA T IA ++ + + +R A GI++ +S VAP GIL+ +A K + + Sbjct: 151 AFADTSGIA--MIADKFTEEAERSRALGIALAFISFGSLVAPPFGGILYEFAGKRVPFIV 208 Query: 203 L 201 L Sbjct: 209 L 209
>VACHT_TORCA (P81721) Vesicular acetylcholine transporter (VAChT) (TorVAChT)| Length = 515 Score = 32.3 bits (72), Expect = 1.4 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -1 Query: 479 LSILLLATYPFMANLYGVELKVLINIASL--LKNMFAATITIACNILQNTAVAQEQRGVA 306 L+I+ +T F +G VL SL L + FA T IA ++ + + +R A Sbjct: 146 LTIMFFSTITFA---FGESYAVLFAARSLQGLGSAFADTSGIA--MIADKYTEESERTQA 200 Query: 305 NGISVTLMSIFKAVAPAAAGILFSWAQKNITGLFL 201 GI++ +S VAP G+L+ +A K + L L Sbjct: 201 LGIALAFISFGSLVAPPFGGVLYQFAGKWVPFLVL 235
>VACHT_TOROC (Q91514) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 32.0 bits (71), Expect = 1.8 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -1 Query: 479 LSILLLATYPFMANLYGVELKVLINIASL--LKNMFAATITIACNILQNTAVAQEQRGVA 306 L+I+ +T F +G +L SL L + FA T IA ++ + + +R A Sbjct: 142 LTIMFFSTITFA---FGESYAILFAARSLQGLGSAFADTSGIA--MIADKYTEESERTQA 196 Query: 305 NGISVTLMSIFKAVAPAAAGILFSWAQKNITGLFL 201 GI++ +S VAP G+L+ +A K + L L Sbjct: 197 LGIALAFISFGSLVAPPFGGVLYQFAGKWVPFLVL 231
>VACHT_TORMA (Q91498) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 32.0 bits (71), Expect = 1.8 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -1 Query: 479 LSILLLATYPFMANLYGVELKVLINIASL--LKNMFAATITIACNILQNTAVAQEQRGVA 306 L+I+ +T F +G +L SL L + FA T IA ++ + + +R A Sbjct: 142 LTIMFFSTITFA---FGESYAILFAARSLQGLGSAFADTSGIA--MIADKYTEESERTQA 196 Query: 305 NGISVTLMSIFKAVAPAAAGILFSWAQKNITGLFL 201 GI++ +S VAP G+L+ +A K + L L Sbjct: 197 LGIALAFISFGSLVAPPFGGVLYQFAGKWVPFLVL 231
>NU4M_MYTED (Q00231) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 435 Score = 31.2 bits (69), Expect = 3.1 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%) Frame = -1 Query: 671 TAYLEIFSLWAVSSRKYRGLSFTSQEVGTVLAISGFGV----LVYQLLIYPLLAKYAGLV 504 T + +F LW VS G+S + VG+++ S + ++ L+ P+ + L Sbjct: 140 TVFGSLFFLWGVSELYLSGMSSSMSSVGSLVKKSAMSLWWLYILGFLIKLPMYPFHLWLP 199 Query: 503 KPFRSAAVLSILLLATYPFMANLYGVELKVLINIASLLKNMFAATITI 360 K A V +LLA YG+ +L+ SL F +++ Sbjct: 200 KAHVEAPVAGSMLLAGVVLKLGGYGLLRFMLVMQVSLSSVFFVLLLSV 247
>YD3A_METJA (P81327) Hypothetical protein MJ1333.1| Length = 137 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Frame = -1 Query: 626 KYRGLSFTSQEVGTVLAISGFGVLVYQLLIYPLLAK-YAGLVKPFRS-----AAVLSILL 465 KY+ + T Q++ T IS V++ LL+Y L K A +V P S LSIL Sbjct: 51 KYKNIIITDQKILTYAIISAVLVVIGSLLLYYALYKGKASIVVPLSSIGPAITVALSILF 110 Query: 464 LATYPFMANLYGVELKVL 411 L + + G+ L ++ Sbjct: 111 LKETLTLPQMIGIVLIII 128
>MDMB_STRMY (Q00718) Acyltransferase mdmB (EC 2.3.1.-)| Length = 387 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -1 Query: 380 FAATITIACNILQNTAVAQEQRGVANGISVTLMSIFKAVAPAAAGILFSWAQKN 219 FAA AC+I Q A +Q G A TL SI +V +G + +W+ ++ Sbjct: 17 FAALAVFACHIAQQQFFADQQVGTALLHITTLGSIAVSVFFLLSGFVLAWSARD 70
>YHHS_SHIFL (P59195) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -1 Query: 491 SAAVLSILLL--ATYPFMANLYGVELKVLINIASLLKNMFAATITIACNILQNTAVAQEQ 318 S ++ +LL+ AT P+MA I LL + + A ++ AV Q+ Sbjct: 303 SVEIIGLLLVGVATMPWMAK-----------IGVLLAGAGFSLVFPALGVVAVKAVPQQN 351 Query: 317 RGVANGISVTLMSIFKAVAPAAAGILFSWA 228 +G A M + V AG++ SWA Sbjct: 352 QGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECOLI (P37621) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -1 Query: 491 SAAVLSILLL--ATYPFMANLYGVELKVLINIASLLKNMFAATITIACNILQNTAVAQEQ 318 S ++ +LL+ AT P+MA I LL + + A ++ AV Q+ Sbjct: 303 SVEIIGLLLVGVATMPWMAK-----------IGVLLAGAGFSLVFPALGVVAVKAVPQQN 351 Query: 317 RGVANGISVTLMSIFKAVAPAAAGILFSWA 228 +G A M + V AG++ SWA Sbjct: 352 QGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECOL6 (Q8FCN5) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -1 Query: 491 SAAVLSILLL--ATYPFMANLYGVELKVLINIASLLKNMFAATITIACNILQNTAVAQEQ 318 S ++ +LL+ AT P+MA I LL + + A ++ AV Q+ Sbjct: 303 SVEIIGLLLVGVATMPWMAK-----------IGVLLAGAGFSLVFPALGVVAVKAVPQQN 351 Query: 317 RGVANGISVTLMSIFKAVAPAAAGILFSWA 228 +G A M + V AG++ SWA Sbjct: 352 QGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>YHHS_ECO57 (Q8X6P4) UPF0226 protein yhhS| Length = 419 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -1 Query: 491 SAAVLSILLL--ATYPFMANLYGVELKVLINIASLLKNMFAATITIACNILQNTAVAQEQ 318 S ++ +LL+ AT P+MA I LL + + A ++ AV Q+ Sbjct: 303 SVEIIGLLLVGVATMPWMAK-----------IGVLLAGAGFSLVFPALGVVAVKAVPQQN 351 Query: 317 RGVANGISVTLMSIFKAVAPAAAGILFSWA 228 +G A M + V AG++ SWA Sbjct: 352 QGAALATYTVFMDLSLGVTGPLAGLVMSWA 381
>HSF1_HUMAN (Q00613) Heat shock factor protein 1 (HSF 1) (Heat shock| transcription factor 1) (HSTF 1) Length = 529 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -2 Query: 532 RSLPSMLG*S-SHSDLQRYYLYFSLQHIHSWLTYMAWSSKYSST 404 R +P ML S S + +Y FSL+H+H Y A S YSS+ Sbjct: 207 RKIPLMLNDSGSAHSMPKYSRQFSLEHVHGSGPYSAPSPAYSSS 250
>EURL_CHICK (Q9I8W6) Protein EURL| Length = 293 Score = 29.6 bits (65), Expect = 9.1 Identities = 31/114 (27%), Positives = 47/114 (41%) Frame = +3 Query: 318 LFLCHRCVLQNVAGNSNRSRKHILKKRGYVDEYFELHAI*VSHEWICCKEKYR*YRCRSE 497 L CH C N+ G H RG+ D + + H I C + K RS Sbjct: 29 LSFCHICFELNIEGVPKSDLLHTRSLRGHRDCFEKFHLI---ANQDCPRTKL----SRSP 81 Query: 498 WLD*PSILGKERVNQKLIYQNTKT*DS*HGTNLLRCKTQSPVFSTAHSPE*KYL 659 + + SIL K ++N + Y K DS ++ +Q P+F+ H + K L Sbjct: 82 YAEVKSILSK-KINWIIQYAQNKDIDSDTESSK---TSQHPLFNLRHQTDRKLL 131
>Y196_THEAC (Q9HLN1) Hypothetical ANK-repeat protein Ta0196| Length = 208 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/66 (22%), Positives = 31/66 (46%) Frame = +1 Query: 202 KNNPVMFF*AHENRIPAAAGATALKIDMRVTDIPFATPLCSCATAVFCRMLQAIVIVAAN 381 + N + + NR+ +A ALK + + D TP+C + M++ ++ AN Sbjct: 82 EGNTALMWAVRNNRMESAKSLIALKCSIDIPDSAGNTPICWAVIFGYTDMVKLLISSGAN 141 Query: 382 IFLRSE 399 I + ++ Sbjct: 142 INISND 147
>ALG10_CANAL (Q59YV2) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 450 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -1 Query: 608 FTSQEVGTVLAISGFGVLVYQLLIYPLLAKYAGLVKP-FRSAAVLSILLLAT 456 F + T+L I G++ Y+LL YP+L+ G + FR ++ I +A+ Sbjct: 161 FYTDVSSTILIILSLGLINYKLLQYPMLSALVGFMSLWFRQTNIIWIAFIAS 212
>VACHT_RAT (Q62666) Vesicular acetylcholine transporter (VAChT) (Solute| carrier family 18 member 3) (rVAT) Length = 530 Score = 29.6 bits (65), Expect = 9.1 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Frame = -1 Query: 554 VYQLLIYPLLAKYAGLVKPFRSAAV-LSILLLATYPFMANLYGVELKVLINIASL--LKN 384 + QLL+ PL + + + L ++ +T F + + L SL L + Sbjct: 133 ILQLLVNPLSGPFIDRMSYDVPLLIGLGVMFASTVMFA---FAEDYATLFAARSLQGLGS 189 Query: 383 MFAATITIACNILQNTAVAQEQRGVANGISVTLMSIFKAVAPAAAGILFSWAQKNITGLF 204 FA T IA ++ + + +R A G+++ +S VAP GIL+ +A K + L Sbjct: 190 AFADTSGIA--MIADKYPEEPERSRALGVALAFISFGSLVAPPFGGILYEFAGKRVPFLV 247 Query: 203 L 201 L Sbjct: 248 L 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,952,869 Number of Sequences: 219361 Number of extensions: 1992955 Number of successful extensions: 4812 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4809 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
