ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16n06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184007.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2184 Score = 389 bits (196), Expect = e-105 Identities = 355/408 (87%) Strand = Plus / Minus Query: 209 ggtgcactcagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaag 268 |||||||||||||||| ||| || || |||||||| || |||||||| ||||||| |||| Sbjct: 2156 ggtgcactcagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaag 2097 Query: 269 aagctgccgtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatg 328 | | || ||||||||||||||| || |||||| || |||||||| ||||| || ||| Sbjct: 2096 atgtcgctataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatg 2037 Query: 329 gaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaagattgag 388 |||||| |||| ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 2036 gaatctgcccagaacatgattcctcccctatacggtgggaatcccatgccaaagattgag 1977 Query: 389 gcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggacacggcacgcttcg 448 || |||||||| || || ||||| |||||||| ||||||||||| |||||||| || || Sbjct: 1976 gcaatgtcaaggtcagaagccttgactgcaattccctcatcaagaacacggcaagcctca 1917 Query: 449 tttatgaccgggaagaacaccatctcaactatgtccttgtcacttagcttcatcaactca 508 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1916 tttatgactgggaagaagaccatctcaactatgtccttctcacttagcttcatcaactca 1857 Query: 509 gcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttcagga 568 | |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| ||| Sbjct: 1856 gtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttcggga 1797 Query: 569 tcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 1796 tcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 1749
>dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D07, full insert sequence Length = 2677 Score = 389 bits (196), Expect = e-105 Identities = 355/408 (87%) Strand = Plus / Minus Query: 209 ggtgcactcagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaag 268 |||||||||||||||| ||| || || |||||||| || |||||||| ||||||| |||| Sbjct: 2372 ggtgcactcagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaag 2313 Query: 269 aagctgccgtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatg 328 | | || ||||||||||||||| || |||||| || |||||||| ||||| || ||| Sbjct: 2312 atgtcgctataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatg 2253 Query: 329 gaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaagattgag 388 |||||| |||| ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 2252 gaatctgcccagaacatgattcctcccctatacggtgggaatcccatgccaaagattgag 2193 Query: 389 gcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggacacggcacgcttcg 448 || |||||||| || || ||||| |||||||| ||||||||||| |||||||| || || Sbjct: 2192 gcaatgtcaaggtcagaagccttgactgcaattccctcatcaagaacacggcaagcctca 2133 Query: 449 tttatgaccgggaagaacaccatctcaactatgtccttgtcacttagcttcatcaactca 508 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2132 tttatgactgggaagaagaccatctcaactatgtccttctcacttagcttcatcaactca 2073 Query: 509 gcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttcagga 568 | |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| ||| Sbjct: 2072 gtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttcggga 2013 Query: 569 tcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 2012 tcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 1965
>dbj|AK099063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157A11, full insert sequence Length = 941 Score = 389 bits (196), Expect = e-105 Identities = 355/408 (87%) Strand = Plus / Minus Query: 209 ggtgcactcagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaag 268 |||||||||||||||| ||| || || |||||||| || |||||||| ||||||| |||| Sbjct: 598 ggtgcactcagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaag 539 Query: 269 aagctgccgtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatg 328 | | || ||||||||||||||| || |||||| || |||||||| ||||| || ||| Sbjct: 538 atgtcgctataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatg 479 Query: 329 gaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaagattgag 388 |||||| |||| ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 478 gaatctgcccagaacatgattcctcccctatacggtgggaatcccatgccaaagattgag 419 Query: 389 gcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggacacggcacgcttcg 448 || |||||||| || || ||||| |||||||| ||||||||||| |||||||| || || Sbjct: 418 gcaatgtcaaggtcagaagccttgactgcaattccctcatcaagaacacggcaagcctca 359 Query: 449 tttatgaccgggaagaacaccatctcaactatgtccttgtcacttagcttcatcaactca 508 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 358 tttatgactgggaagaagaccatctcaactatgtccttctcacttagcttcatcaactca 299 Query: 509 gcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttcagga 568 | |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| ||| Sbjct: 298 gtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttcggga 239 Query: 569 tcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 238 tcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 191
>dbj|AK062168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B11, full insert sequence Length = 1148 Score = 389 bits (196), Expect = e-105 Identities = 355/408 (87%) Strand = Plus / Minus Query: 209 ggtgcactcagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaag 268 |||||||||||||||| ||| || || |||||||| || |||||||| ||||||| |||| Sbjct: 840 ggtgcactcagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaag 781 Query: 269 aagctgccgtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatg 328 | | || ||||||||||||||| || |||||| || |||||||| ||||| || ||| Sbjct: 780 atgtcgctataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatg 721 Query: 329 gaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaagattgag 388 |||||| |||| ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 720 gaatctgcccagaacatgattcctcccctatacggtgggaatcccatgccaaagattgag 661 Query: 389 gcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggacacggcacgcttcg 448 || |||||||| || || ||||| |||||||| ||||||||||| |||||||| || || Sbjct: 660 gcaatgtcaaggtcagaagccttgactgcaattccctcatcaagaacacggcaagcctca 601 Query: 449 tttatgaccgggaagaacaccatctcaactatgtccttgtcacttagcttcatcaactca 508 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 600 tttatgactgggaagaagaccatctcaactatgtccttctcacttagcttcatcaactca 541 Query: 509 gcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttcagga 568 | |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| ||| Sbjct: 540 gtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttcggga 481 Query: 569 tcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 |||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 480 tcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 433
>gb|AY109470.1| Zea mays CL2102_5 mRNA sequence Length = 1160 Score = 238 bits (120), Expect = 2e-59 Identities = 275/330 (83%) Strand = Plus / Plus Query: 209 ggtgcactcagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaag 268 ||||||||||||||| ||||||| || |||||||| |||||||| ||||| |||| |||| Sbjct: 158 ggtgcactcagaggattcccttttgcagctctttcagcgaggtaagagcagggcttgaag 217 Query: 269 aagctgccgtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatg 328 ||| |||||||| | ||||| || ||||||| | |||||||| |||||||||||| Sbjct: 218 aagnnnnnataccgctttgtccactcctccaactttccatggatgtactttgcgccgatg 277 Query: 329 gaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaagattgag 388 |||||| |||| |||||| |||||||| ||||||||||| |||||||| ||||| || Sbjct: 278 gaatctgcccagtgcatgacacctcccctataaggtgggaaccccatgccgaagatcgaa 337 Query: 389 gcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggacacggcacgcttcg 448 |||||||| || || || ||||| || || || |||||||||||||| ||||| ||||| Sbjct: 338 gcgatgtctaggtcagaagccttgacggcgataccctcatcaaggactcggcaggcttca 397 Query: 449 tttatgaccgggaagaacaccatctcaactatgtccttgtcacttagcttcatcaactca 508 ||||| |||||| ||||||||| |||||||| || |||||||||||||||| |||| Sbjct: 398 tttatcaccgggnnnnncaccatctcgactatgtctttctcacttagcttcatcagctca 457 Query: 509 gcgtctggagtgactcctgccatgctccta 538 | ||||| || |||||||||||||||||| Sbjct: 458 ggatctggtgtaactcctgccatgctccta 487 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 565 aggatcaggagttgccttcctcttatcctcgtacttgtaaaatcc 609 |||||||||||| || |||||||| |||| |||||||||||||| Sbjct: 514 aggatcaggagtcgctttcctcttgccctcatacttgtaaaatcc 558
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 184 bits (93), Expect = 2e-43 Identities = 132/145 (91%) Strand = Plus / Minus Query: 362 ggtgggaatcccatgccaaagattgaggcgatgtcaagatctgacgcctttactgcaatg 421 ||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| Sbjct: 13875253 ggtgggaatcccatgccaaagattgaggcaatgtcaaggtcagaagccttgactgcaatt 13875194 Query: 422 ccctcatcaaggacacggcacgcttcgtttatgaccgggaagaacaccatctcaactatg 481 ||||||||||| |||||||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 13875193 ccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctcaactatg 13875134 Query: 482 tccttgtcacttagcttcatcaact 506 ||||| ||||||||||||||||||| Sbjct: 13875133 tccttctcacttagcttcatcaact 13875109 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 505 ctcagcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttc 564 ||||| |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| Sbjct: 13874663 ctcagtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttc 13874604 Query: 565 aggatcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 13874603 gggatcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 13874552 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 217 cagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaagaagctgcc 276 |||||||| ||| || || |||||||| || |||||||| ||||||| ||||| | || Sbjct: 13875484 cagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaagatgtcgct 13875425 Query: 277 gtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatggaatctcc 336 ||||||||||||||| || |||||| || |||||||| ||||| || ||||||||| | Sbjct: 13875424 ataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatggaatctgc 13875365 Query: 337 ccacaacatgacccctcccctg 358 ||| ||||||| ||||||||| Sbjct: 13875364 ccagaacatgattcctcccctg 13875343
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 184 bits (93), Expect = 2e-43 Identities = 132/145 (91%) Strand = Plus / Minus Query: 362 ggtgggaatcccatgccaaagattgaggcgatgtcaagatctgacgcctttactgcaatg 421 ||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| Sbjct: 35555 ggtgggaatcccatgccaaagattgaggcaatgtcaaggtcagaagccttgactgcaatt 35496 Query: 422 ccctcatcaaggacacggcacgcttcgtttatgaccgggaagaacaccatctcaactatg 481 ||||||||||| |||||||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 35495 ccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctcaactatg 35436 Query: 482 tccttgtcacttagcttcatcaact 506 ||||| ||||||||||||||||||| Sbjct: 35435 tccttctcacttagcttcatcaact 35411 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 505 ctcagcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttc 564 ||||| |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| Sbjct: 34965 ctcagtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttc 34906 Query: 565 aggatcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 34905 gggatcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 34854 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 217 cagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaagaagctgcc 276 |||||||| ||| || || |||||||| || |||||||| ||||||| ||||| | || Sbjct: 35786 cagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaagatgtcgct 35727 Query: 277 gtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatggaatctcc 336 ||||||||||||||| || |||||| || |||||||| ||||| || ||||||||| | Sbjct: 35726 ataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatggaatctgc 35667 Query: 337 ccacaacatgacccctcccctg 358 ||| ||||||| ||||||||| Sbjct: 35666 ccagaacatgattcctcccctg 35645
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 184 bits (93), Expect = 2e-43 Identities = 132/145 (91%) Strand = Plus / Minus Query: 362 ggtgggaatcccatgccaaagattgaggcgatgtcaagatctgacgcctttactgcaatg 421 ||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| Sbjct: 112656 ggtgggaatcccatgccaaagattgaggcaatgtcaaggtcagaagccttgactgcaatt 112597 Query: 422 ccctcatcaaggacacggcacgcttcgtttatgaccgggaagaacaccatctcaactatg 481 ||||||||||| |||||||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 112596 ccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctcaactatg 112537 Query: 482 tccttgtcacttagcttcatcaact 506 ||||| ||||||||||||||||||| Sbjct: 112536 tccttctcacttagcttcatcaact 112512 Score = 119 bits (60), Expect = 1e-23 Identities = 99/112 (88%) Strand = Plus / Minus Query: 505 ctcagcgtctggagtgactcctgccatgctcctagatttctgaatatacgtcataatttc 564 ||||| |||||| || ||||| ||||| ||||||||||| | |||||| |||||||||| Sbjct: 112066 ctcagtgtctggtgttactccagccatactcctagatttttcaatatatttcataatttc 112007 Query: 565 aggatcaggagttgccttcctcttatcctcgtacttgtaaaatcccttccga 616 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 112006 gggatcaggagttgccttcctcttgtcctcatacttgtaaaagcccttccga 111955 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 217 cagaggaatccctttcgccgctctttcggcgaggtaggagcaaggctcgaagaagctgcc 276 |||||||| ||| || || |||||||| || |||||||| ||||||| ||||| | || Sbjct: 112887 cagaggaaccccatttgctgctctttctgcaaggtaggaacaaggcttgaagatgtcgct 112828 Query: 277 gtaccgcttcgcccactgctgcaacttttcgtggatgtattttgcgccgatggaatctcc 336 ||||||||||||||| || |||||| || |||||||| ||||| || ||||||||| | Sbjct: 112827 ataccgcttcgcccacacctccaacttgtcatggatgtactttgcaccaatggaatctgc 112768 Query: 337 ccacaacatgacccctcccctg 358 ||| ||||||| ||||||||| Sbjct: 112767 ccagaacatgattcctcccctg 112746
>ref|NM_185270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 317 tttgcgccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccatg 376 ||||||||||||||||| |||| ||| || || |||||||| ||||| ||||||||| Sbjct: 2012 tttgcgccgatggaatcggcccagtacacgatgccacccctgtatggtggaaatcccatg 1953 Query: 377 ccaaagattgaggcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggaca 436 || ||||||||||||||||| || || || || || |||||||||||| ||||| Sbjct: 1952 ccgaagattgaggcgatgtcgaggtccgaggctttgttggcaatgccctcactgaggacc 1893 Query: 437 cggcacgcttcgtttatgaccgggaagaacaccatctcaactatgtccttgtc 489 |||| || ||||| || || ||||||||||||||||| ||||| |||||||| Sbjct: 1892 tggcaggcctcgttgataacagggaagaacaccatctccactatttccttgtc 1840 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 563 tcaggatcaggagttgccttcctcttatcctcgtacttgtaaaatccctt 612 ||||||||||| | ||||||| ||| |||| ||||||||||||||||| Sbjct: 1766 tcaggatcagggatggccttccgattaccctcatacttgtaaaatccctt 1717
>dbj|AK102420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D14, full insert sequence Length = 2757 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 317 tttgcgccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccatg 376 ||||||||||||||||| |||| ||| || || |||||||| ||||| ||||||||| Sbjct: 2271 tttgcgccgatggaatcggcccagtacacgatgccacccctgtatggtggaaatcccatg 2212 Query: 377 ccaaagattgaggcgatgtcaagatctgacgcctttactgcaatgccctcatcaaggaca 436 || ||||||||||||||||| || || || || || |||||||||||| ||||| Sbjct: 2211 ccgaagattgaggcgatgtcgaggtccgaggctttgttggcaatgccctcactgaggacc 2152 Query: 437 cggcacgcttcgtttatgaccgggaagaacaccatctcaactatgtccttgtc 489 |||| || ||||| || || ||||||||||||||||| ||||| |||||||| Sbjct: 2151 tggcaggcctcgttgataacagggaagaacaccatctccactatttccttgtc 2099 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 563 tcaggatcaggagttgccttcctcttatcctcgtacttgtaaaatccctt 612 ||||||||||| | ||||||| ||| |||| ||||||||||||||||| Sbjct: 2025 tcaggatcagggatggccttccgattaccctcatacttgtaaaatccctt 1976
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 355 cctgtaaggtgggaatcccatgccaaagattgaggcgatgtcaagatctgacgcctttac 414 |||||| ||||| ||||||||||| ||||||||||||||||| || || || || || Sbjct: 38173 cctgtatggtggaaatcccatgccgaagattgaggcgatgtcgaggtccgaggctttgtt 38232 Query: 415 tgcaatgccctcatcaaggacacggcacgcttcgtttatgaccgggaagaacaccatctc 474 |||||||||||| ||||| |||| || ||||| || || ||||||||||||||||| Sbjct: 38233 ggcaatgccctcactgaggacctggcaggcctcgttgataacagggaagaacaccatctc 38292 Query: 475 aactatgtccttgtc 489 ||||| |||||||| Sbjct: 38293 cactatttccttgtc 38307 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 563 tcaggatcaggagttgccttcctcttatcctcgtacttgtaaaatccctt 612 ||||||||||| | ||||||| ||| |||| ||||||||||||||||| Sbjct: 38827 tcaggatcagggatggccttccgattaccctcatacttgtaaaatccctt 38876
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Plus Query: 355 cctgtaaggtgggaatcccatgccaaagattgaggcgatgtcaagatctgacgcctttac 414 |||||| ||||| ||||||||||| ||||||||||||||||| || || || || || Sbjct: 3160456 cctgtatggtggaaatcccatgccgaagattgaggcgatgtcgaggtccgaggctttgtt 3160515 Query: 415 tgcaatgccctcatcaaggacacggcacgcttcgtttatgaccgggaagaacaccatctc 474 |||||||||||| ||||| |||| || ||||| || || ||||||||||||||||| Sbjct: 3160516 ggcaatgccctcactgaggacctggcaggcctcgttgataacagggaagaacaccatctc 3160575 Query: 475 aactatgtccttgtc 489 ||||| |||||||| Sbjct: 3160576 cactatttccttgtc 3160590 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 563 tcaggatcaggagttgccttcctcttatcctcgtacttgtaaaatccctt 612 ||||||||||| | ||||||| ||| |||| ||||||||||||||||| Sbjct: 3161110 tcaggatcagggatggccttccgattaccctcatacttgtaaaatccctt 3161159
>gb|BT014107.1| Lycopersicon esculentum clone 133211F, mRNA sequence Length = 2510 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 344 atgacccctcccctgtaaggtgggaatcccatgcc 378 |||| |||||| |||||||| |||||||||||||| Sbjct: 2084 atgatccctcctctgtaaggagggaatcccatgcc 2050
>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete sequence Length = 211243 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 537 tagatttctgaatatacgtcat 558 |||||||||||||||||||||| Sbjct: 192845 tagatttctgaatatacgtcat 192824
>ref|NM_111566.2| Arabidopsis thaliana MFP2 (MULTIFUNCTIONAL PROTEIN); enoyl-CoA hydratase AT3G06860 (MFP2) mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 323 ccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccat 375 ||||||||||| |||| ||||||| ||||| ||||||||||| || ||||| Sbjct: 2093 ccgatggaatcagcccagaacatgattcctcctctgtaaggtggaaaacccat 2041
>gb|BC014149.2| Homo sapiens cDNA clone IMAGE:3613441, partial cds Length = 1326 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cctcccctgtaaggtgggaat 370 ||||||||||||||||||||| Sbjct: 938 cctcccctgtaaggtgggaat 958
>emb|AL596450.8| Mouse DNA sequence from clone RP23-373H2 on chromosome 11 Contains the 3' end of the Ddc gene for dopa decarboxylase, the Fignl1 gene for fidgetin-like 1, the Znfn1a1 gene for zinc finger protein, subfamily 1A, 1 (Ikaros), two novel genes and two CpG islands, complete sequence Length = 203257 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ctcggtgacataattccttca 148 ||||||||||||||||||||| Sbjct: 39964 ctcggtgacataattccttca 39944
>emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chromosome 4 Contains the 3' end of the Mpdz gene for multiple PDZ domain protein, complete sequence Length = 180629 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 ttattattattcagctccctc 96 ||||||||||||||||||||| Sbjct: 166505 ttattattattcagctccctc 166485
>gb|AY062650.1| Arabidopsis thaliana fatty acid multifunctional protein (AtMFP2) (At3g06860; F17A9.1) mRNA, complete cds Length = 2589 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 323 ccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccat 375 ||||||||||| |||| ||||||| ||||| ||||||||||| || ||||| Sbjct: 2179 ccgatggaatcagcccagaacatgattcctcctctgtaaggtggaaaacccat 2127
>gb|AY062621.1| Arabidopsis thaliana fatty acid multifunctional protein (AtMFP2) (F17A9.1) mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 323 ccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccat 375 ||||||||||| |||| ||||||| ||||| ||||||||||| || ||||| Sbjct: 2093 ccgatggaatcagcccagaacatgattcctcctctgtaaggtggaaaacccat 2041
>gb|AF123254.1|AF123254 Arabidopsis thaliana MFP2 mRNA, complete cds Length = 2489 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 323 ccgatggaatctccccacaacatgacccctcccctgtaaggtgggaatcccat 375 ||||||||||| |||| ||||||| ||||| ||||||||||| || ||||| Sbjct: 2036 ccgatggaatcagcccagaacatgattcctcctctgtaaggtggaaaacccat 1984
>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence Length = 168880 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cctcccctgtaaggtgggaat 370 ||||||||||||||||||||| Sbjct: 3143 cctcccctgtaaggtgggaat 3163
>gb|AC153563.3| Mus musculus 10 BAC RP23-455D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 171018 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 558 taatttcaggatcaggagttg 578 ||||||||||||||||||||| Sbjct: 94485 taatttcaggatcaggagttg 94465
>ref|NM_119678.1| Arabidopsis thaliana unknown protein AT4G35120 mRNA, complete cds Length = 1170 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 cttcctcttatcctcgtact 599 |||||||||||||||||||| Sbjct: 329 cttcctcttatcctcgtact 348
>gb|AC127368.3| Mus musculus BAC clone RP23-22J14 from chromosome 18, complete sequence Length = 206102 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 cttttcgtggatgtattttg 320 |||||||||||||||||||| Sbjct: 117838 cttttcgtggatgtattttg 117819
>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence Length = 206003 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ttgtcacttagcttcatcaa 504 |||||||||||||||||||| Sbjct: 131061 ttgtcacttagcttcatcaa 131042
>gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete sequence Length = 124836 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tgttgttattattattcagc 90 |||||||||||||||||||| Sbjct: 116265 tgttgttattattattcagc 116284
>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence Length = 194546 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tgttgttattattattcagc 90 |||||||||||||||||||| Sbjct: 28546 tgttgttattattattcagc 28527
>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete sequence Length = 199388 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 497 ttcatcaactcagcgtctggagtg 520 ||||| |||||||||||||||||| Sbjct: 125689 ttcataaactcagcgtctggagtg 125712
>emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chromosome 10, complete sequence Length = 165910 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 ctcctagatttctgaatata 552 |||||||||||||||||||| Sbjct: 27662 ctcctagatttctgaatata 27643
>emb|AL158157.8| Human DNA sequence from clone RP11-413D24 on chromosome 9, complete sequence Length = 183410 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 actaatcaccaccttcttca 117 |||||||||||||||||||| Sbjct: 171612 actaatcaccaccttcttca 171631
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aatcaccaccttcttcacgc 120 |||||||||||||||||||| Sbjct: 2267334 aatcaccaccttcttcacgc 2267353
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 cttcctcttatcctcgtact 599 |||||||||||||||||||| Sbjct: 171914 cttcctcttatcctcgtact 171933
>emb|AL035522.1|ATT12J5 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII project) Length = 84499 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 cttcctcttatcctcgtact 599 |||||||||||||||||||| Sbjct: 41992 cttcctcttatcctcgtact 42011
>emb|AL022023.1|ATM4E13 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project) Length = 80346 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 cttcctcttatcctcgtact 599 |||||||||||||||||||| Sbjct: 72947 cttcctcttatcctcgtact 72966
>emb|AJ000886.1|BNJ000886 Brassica napus multifunctional protein of glyoxysomal beta-oxidation Length = 2494 Score = 40.1 bits (20), Expect = 8.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 326 atggaatctccccacaacatgacccctcccctgtaaggtgggaatcccatgccaaa 381 |||||||| |||| ||||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 2053 atggaatcagcccagaacatgattcctcctctgtaaggtggaaaacccattccaaa 1998
>gb|AF275633.1|AF275633 Phanerochaete chrysosporium lipG/lipH intergenic region Length = 5242 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aatgccctcatcaaggacac 437 |||||||||||||||||||| Sbjct: 5019 aatgccctcatcaaggacac 5038
>emb|AL772166.15| Mouse DNA sequence from clone RP23-413I12 on chromosome 2, complete sequence Length = 184547 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ttccttcagctgacagaaac 160 |||||||||||||||||||| Sbjct: 141436 ttccttcagctgacagaaac 141417
>emb|AL110505.5|CNS01DRA Human chromosome 14 DNA sequence BAC R-816J8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 198441 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ttattattcagctccctccactaa 102 |||||||||| ||||||||||||| Sbjct: 173505 ttattattcatctccctccactaa 173482 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,772,437 Number of Sequences: 3902068 Number of extensions: 5772437 Number of successful extensions: 109297 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109155 Number of HSP's gapped (non-prelim): 135 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
