Clone Information

BLAST Search Result

Clone Name	rbasd16n05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY105941.1\| Zea mays PCO135078 mRNA sequence	260	5e-66
2	gb\|AY730048.1\| Zea mays spermidine synthase (spesyn) mRNA, compl...	260	5e-66
3	dbj\|AB098063.1\| Oryza sativa (japonica cultivar-group) OsSPDS2 m...	242	1e-60
4	dbj\|AK068518.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	242	1e-60
5	dbj\|AK067301.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	242	1e-60
6	emb\|AJ251302.1\|OSA251302 Oryza sativa partial mRNA for putative ...	234	3e-58
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	107	4e-20
8	dbj\|AP004745.2\| Oryza sativa (japonica cultivar-group) genomic D...	107	4e-20
9	dbj\|AK065153.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	103	7e-19
10	gb\|AY110392.1\| Zea mays CL7038_2 mRNA sequence	98	4e-17
11	gb\|AY110118.1\| Zea mays CL7038_1 mRNA sequence	74	6e-10
12	emb\|AM158913.1\| Plantago major partial mRNA for spermidine synth...	62	2e-06
13	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
14	dbj\|AP004875.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
15	dbj\|AP006844.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
16	emb\|CT573028.11\| M.truncatula DNA sequence from clone MTH2-51N20...	50	0.009
17	gb\|AY335900.1\| Lycopersicon esculentum putative spermine synthas...	46	0.14
18	emb\|BX546477.9\| Zebrafish DNA sequence from clone DKEYP-79C5 in ...	42	2.1
19	emb\|BX322234.7\| Human DNA sequence from clone XXyac-65C7_A on ch...	42	2.1
20	emb\|AL596207.10\| Mouse DNA sequence from clone RP23-336J1 on chr...	42	2.1
21	emb\|CR937028.1\| Zebrafish DNA sequence from clone DKEYP-79C5 in ...	42	2.1
22	emb\|BX323576.9\| Zebrafish DNA sequence from clone DKEYP-77A12 in...	42	2.1
23	dbj\|AK158474.1\| Mus musculus adult inner ear cDNA, RIKEN full-le...	42	2.1
24	emb\|BX571674.7\| Zebrafish DNA sequence from clone DKEY-193C22 in...	42	2.1
25	emb\|BX005327.9\| Zebrafish DNA sequence from clone DKEY-65B16 in ...	42	2.1
26	gb\|AC144753.3\| Ornithorhynchus anatinus clone OA_Bb-228F7, compl...	42	2.1
27	emb\|BX247878.5\| Zebrafish DNA sequence from clone CH211-266O5 in...	42	2.1
28	dbj\|AB072917.2\| Malus x domestica MdSPDS2b mRNA forspermidine sy...	42	2.1
29	dbj\|AB072916.2\| Malus x domestica MdSPDS2a mRNA forspermidine sy...	42	2.1
30	dbj\|AB072915.2\| Malus x domestica MdSPDS1 mRNA forspermidine syn...	42	2.1
31	gb\|AC139562.8\| Mus musculus chromosome 5, clone RP24-180G11, com...	40	8.4
32	ref\|XM_654820.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	8.4
33	gb\|BT014416.1\| Lycopersicon esculentum clone 133724F, mRNA sequence	40	8.4
34	gb\|AC025724.3\| Caenorhabditis elegans cosmid Y67D8C, complete se...	40	8.4
35	gb\|AC125327.4\| Mus musculus BAC clone RP23-346B17 from chromosom...	40	8.4
36	gb\|AC121962.3\| Mus musculus chromosome UNK clone RP24-255I5, com...	40	8.4
37	gb\|AC096917.3\| Homo sapiens chromosome 3 clone RP11-94D19, compl...	40	8.4
38	emb\|Z94057.1\|HS518E13 Human DNA sequence from clone RP3-518E13 o...	40	8.4
39	emb\|AL096867.15\|HSJ365O19 Human DNA sequence from clone RP3-365O...	40	8.4
40	emb\|AL669816.3\| Mouse DNA sequence from clone RP23-266C4 on chro...	40	8.4
41	dbj\|AK129026.1\| Mus musculus cDNA fis, clone TRACH3037267, highl...	40	8.4
42	ref\|XM_691445.1\| PREDICTED: Danio rerio similar to Alpha-tectori...	40	8.4
43	gb\|AC153818.5\| Mus musculus 6 BAC RP23-345F4 (Roswell Park Cance...	40	8.4
44	gb\|AC149149.3\| Xenopus tropicalis clone ISB-175F5, complete sequ...	40	8.4
45	emb\|BX005328.9\| Zebrafish DNA sequence from clone DKEY-63D15 in ...	40	8.4
46	gb\|AC138071.2\| Homo sapiens chromosome 3 clone RP11-504G20, comp...	40	8.4
47	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	8.4
48	gb\|AC117767.13\| Mus musculus chromosome 1, clone RP24-507O16, co...	40	8.4
49	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	8.4
50	gb\|AC162461.6\| Mus musculus chromosome 5, clone RP23-265I19, com...	40	8.4

>gb|AY105941.1| Zea mays PCO135078 mRNA sequence
          Length = 1019

 Score =  260 bits (131), Expect = 5e-66
 Identities = 266/311 (85%)
 Strand = Plus / Minus

                                                                       
Query: 306 agtgttatatgcctccagctccctctttacaaatgttggcagaataaaagcagccctatg 365
           |||| ||||||| ||||| || ||  |||||||||||||||||| |||||||||||||||
Sbjct: 620 agtggtatatgcttccagttctcttcttacaaatgttggcagaacaaaagcagccctatg 561

                                                                       
Query: 366 aatctctgaattgtaaaatctcatctctcgtccatctttagtagctccttcaatcttctc 425
            ||||| |||||||||||||| |  || | |||| |||| |  |||||||| || |||||
Sbjct: 560 gatctcggaattgtaaaatctgagttcccttccagcttttgctgctccttctattttctc 501

                                                                       
Query: 426 gattggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaa 485
            ||||||||| ||||||||||||||| ||| |   ||||||| || || |||||||||||
Sbjct: 500 aattggattcgcaggagtcaagaagttcactgcacgaccttcttttgcacatagcaaaaa 441

                                                                       
Query: 486 tccgatgacaccactaggatatgttggaacacttgcccaggcatagtgcacgccgccctt 545
           ||| ||||||||||| ||||||||||||||||||| |||||||||||||||  | || ||
Sbjct: 440 tccaatgacaccactgggatatgttggaacacttgtccaggcatagtgcacagcaccttt 381

                                                                       
Query: 546 gaatacctcccgacagatagaaagcatatcctggattagatgtgtgtgcagccacatact 605
           ||||  ||  |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 gaatgtctgtcgacagatagcaagcatatcctggattagatgtgtgtgcagccacatgct 321

                      
Query: 606 ttcagctagat 616
            ||||| ||||
Sbjct: 320 ctcagcaagat 310

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>gb|AY730048.1| Zea mays spermidine synthase (spesyn) mRNA, complete cds
          Length = 1571

 Score =  260 bits (131), Expect = 5e-66
 Identities = 266/311 (85%)
 Strand = Plus / Minus

                                                                        
Query: 306  agtgttatatgcctccagctccctctttacaaatgttggcagaataaaagcagccctatg 365
            |||| ||||||| ||||| || ||  |||||||||||||||||| |||||||||||||||
Sbjct: 1148 agtggtatatgcttccagttctcttcttacaaatgttggcagaacaaaagcagccctatg 1089

                                                                        
Query: 366  aatctctgaattgtaaaatctcatctctcgtccatctttagtagctccttcaatcttctc 425
             ||||| |||||||||||||| |  || | |||| |||| |  |||||||| || |||||
Sbjct: 1088 gatctcggaattgtaaaatctgagttcccttccagcttttgctgctccttctattttctc 1029

                                                                        
Query: 426  gattggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaa 485
             ||||||||| ||||||||||||||| ||| |   ||||||| || || |||||||||||
Sbjct: 1028 aattggattcgcaggagtcaagaagttcactgcacgaccttcttttgcacatagcaaaaa 969

                                                                        
Query: 486  tccgatgacaccactaggatatgttggaacacttgcccaggcatagtgcacgccgccctt 545
            ||| ||||||||||| ||||||||||||||||||| |||||||||||||||  | || ||
Sbjct: 968  tccaatgacaccactgggatatgttggaacacttgtccaggcatagtgcacagcaccttt 909

                                                                        
Query: 546  gaatacctcccgacagatagaaagcatatcctggattagatgtgtgtgcagccacatact 605
            ||||  ||  |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 908  gaatgtctgtcgacagatagcaagcatatcctggattagatgtgtgtgcagccacatgct 849

                       
Query: 606  ttcagctagat 616
             ||||| ||||
Sbjct: 848  ctcagcaagat 838

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>dbj|AB098063.1| Oryza sativa (japonica cultivar-group) OsSPDS2 mRNA for aminopropyl
            transferase, complete cds
          Length = 1560

 Score =  242 bits (122), Expect = 1e-60
 Identities = 251/294 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  tccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctctgaattg 378
            ||||| || ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 1175 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaacctctgaattg 1116

                                                                        
Query: 379  taaaatctcatctctcgtccatctttagtagctccttcaatcttctcgattggattcaca 438
            |||||||| || || | |||| |||   |||||||||| |  ||||| ||||||||||||
Sbjct: 1115 taaaatctgatttcccttccagcttccatagctccttccagtttctcaattggattcaca 1056

                                                                        
Query: 439  ggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgatgacacca 498
            ||||  | ||||| ||| | ||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 1055 ggagaaaggaagttcactgctggaccttctttcgcacatagcaaaaaaccaatgacacca 996

                                                                        
Query: 499  ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
            |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 995  ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 936

                                                                  
Query: 559  cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
            ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 935  cagatagaaagcatatcttgaattagatgtgtgtgcagccacatactctcagct 882

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>dbj|AK068518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G09, full
            insert sequence
          Length = 1614

 Score =  242 bits (122), Expect = 1e-60
 Identities = 251/294 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  tccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctctgaattg 378
            ||||| || ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 1197 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaacctctgaattg 1138

                                                                        
Query: 379  taaaatctcatctctcgtccatctttagtagctccttcaatcttctcgattggattcaca 438
            |||||||| || || | |||| |||   |||||||||| |  ||||| ||||||||||||
Sbjct: 1137 taaaatctgatttcccttccagcttccatagctccttccagtttctcaattggattcaca 1078

                                                                        
Query: 439  ggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgatgacacca 498
            ||||  | ||||| ||| | ||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 1077 ggagaaaggaagttcactgctggaccttctttcgcacatagcaaaaaaccaatgacacca 1018

                                                                        
Query: 499  ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
            |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 1017 ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 958

                                                                  
Query: 559  cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
            ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 957  cagatagaaagcatatcttgaattagatgtgtgtgcagccacatactctcagct 904

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>dbj|AK067301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105J05, full
            insert sequence
          Length = 1593

 Score =  242 bits (122), Expect = 1e-60
 Identities = 251/294 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  tccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctctgaattg 378
            ||||| || ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 1199 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaacctctgaattg 1140

                                                                        
Query: 379  taaaatctcatctctcgtccatctttagtagctccttcaatcttctcgattggattcaca 438
            |||||||| || || | |||| |||   |||||||||| |  ||||| ||||||||||||
Sbjct: 1139 taaaatctgatttcccttccagcttccatagctccttccagtttctcaattggattcaca 1080

                                                                        
Query: 439  ggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgatgacacca 498
            ||||  | ||||| ||| | ||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 1079 ggagaaaggaagttcactgctggaccttctttcgcacatagcaaaaaaccaatgacacca 1020

                                                                        
Query: 499  ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
            |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 1019 ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 960

                                                                  
Query: 559  cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
            ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 959  cagatagaaagcatatcttgaattagatgtgtgtgcagccacatactctcagct 906

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>emb|AJ251302.1|OSA251302 Oryza sativa partial mRNA for putative aminopropyltransferase
           (spdSyn gene)
          Length = 883

 Score =  234 bits (118), Expect = 3e-58
 Identities = 250/294 (85%)
 Strand = Plus / Minus

                                                                       
Query: 319 tccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctctgaattg 378
           ||||| || ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 490 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaacctctgaattg 431

                                                                       
Query: 379 taaaatctcatctctcgtccatctttagtagctccttcaatcttctcgattggattcaca 438
           |||||||| || || | |||| |||   |||||||||| |  ||||| ||||||||||||
Sbjct: 430 taaaatctgatttcccttccagcttccatagctccttccagtttctcaattggattcaca 371

                                                                       
Query: 439 ggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgatgacacca 498
           ||||  | ||||| ||| | ||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 370 ggagaaaggaagttcactgctggaccttctttcgcacatagcaaaaaaccaatgacacca 311

                                                                       
Query: 499 ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
           |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 310 ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 251

                                                                 
Query: 559 cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
           |||||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 250 cagatagagagcatatcttgaattagatgtgtgtgcagccacatactctcagct 197

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                            
Query: 499      ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
                |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 19270144 ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 19270085

                                                                      
Query: 559      cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
                ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 19270084 cagatagaaagcatatcttgaattagatgtgtgtgcagccacatactctcagct 19270031



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                            
Query: 364      tgaatctctgaattgtaaaatctcatctctcgtccatctttagtagctccttcaatcttc 423
                |||| |||||||||||||||||| || || | |||| |||   |||||||||| |  |||
Sbjct: 19271130 tgaacctctgaattgtaaaatctgatttcccttccagcttccatagctccttccagtttc 19271071

                                                                            
Query: 424      tcgattggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaa 483
                || ||||||||||||||||  | ||||| ||| | ||||||||| ||||| |||||||||
Sbjct: 19271070 tcaattggattcacaggagaaaggaagttcactgctggaccttctttcgcacatagcaaa 19271011

                                 
Query: 484      aatccgatgacaccact 500
                || || |||||||||||
Sbjct: 19271010 aaaccaatgacaccact 19270994



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 319      tccagctccctctttacaaatgttggcagaataaaagcagccctatgaa 367
                ||||| || ||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 19271327 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaa 19271279

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>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0001B01
          Length = 147585

 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                          
Query: 499    ctaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccga 558
              |||||||| || ||||| |||| ||||||||| |||||  | |||||||||   || |||
Sbjct: 107908 ctaggataggtaggaacgcttgtccaggcataatgcacagctcccttgaatgtttcacga 107849

                                                                    
Query: 559    cagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagct 612
              ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 107848 cagatagaaagcatatcttgaattagatgtgtgtgcagccacatactctcagct 107795



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                          
Query: 364    tgaatctctgaattgtaaaatctcatctctcgtccatctttagtagctccttcaatcttc 423
              |||| |||||||||||||||||| || || | |||| |||   |||||||||| |  |||
Sbjct: 108894 tgaacctctgaattgtaaaatctgatttcccttccagcttccatagctccttccagtttc 108835

                                                                          
Query: 424    tcgattggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaa 483
              || ||||||||||||||||  | ||||| ||| | ||||||||| ||||| |||||||||
Sbjct: 108834 tcaattggattcacaggagaaaggaagttcactgctggaccttctttcgcacatagcaaa 108775

                               
Query: 484    aatccgatgacaccact 500
              || || |||||||||||
Sbjct: 108774 aaaccaatgacaccact 108758



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                               
Query: 319    tccagctccctctttacaaatgttggcagaataaaagcagccctatgaa 367
              ||||| || ||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 109091 tccagttctctccttacaaatgttggcagaacaaaagcagcccgatgaa 109043

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>dbj|AK065153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B15, full
           insert sequence
          Length = 1293

 Score =  103 bits (52), Expect = 7e-19
 Identities = 235/296 (79%)
 Strand = Plus / Minus

                                                                       
Query: 316 gcctccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctctgaa 375
           ||||| ||||| ||| || |||| ||||| |||| ||| || || ||||| |||||||||
Sbjct: 957 gcctctagctctctccttgcaaaggttgggagaacaaatgcggctctatgcatctctgaa 898

                                                                       
Query: 376 ttgtaaaatctcatctctcgtccatctttagtagctccttcaatcttctcgattggattc 435
           || |||||||| || || | |||  |||   |||||||||| |  || || |||||||| 
Sbjct: 897 ttataaaatctaatatcccttcctgcttccatagctccttctagtttttcaattggattt 838

                                                                       
Query: 436 acaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgatgaca 495
            ||||||||| |||||  || ||||||||||| || || ||||||| ||| || || |||
Sbjct: 837 gcaggagtcaggaagttgactggtggaccttctttggcacatagcagaaacccaatcaca 778

                                                                       
Query: 496 ccactaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcc 555
           ||||| |||||||| || ||||| | |||||||||||| ||    |||||||||  ||| 
Sbjct: 777 ccactgggatatgtcgggacactcgtccaggcatagtggacagaacccttgaatgtctca 718

                                                                   
Query: 556 cgacagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagc 611
           || ||||| |||||||| |||||||| ||||| || |||| |||||| || |||||
Sbjct: 717 cggcagatcgaaagcatgtcctggataagatgcgtatgcaaccacatgctctcagc 662

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>gb|AY110392.1| Zea mays CL7038_2 mRNA sequence
          Length = 823

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 240/301 (79%), Gaps = 2/301 (0%)
 Strand = Plus / Plus

                                                                       
Query: 313 tatgcctccagctccctctttacaaatgttggcagaataaaagcagccctatgaatctct 372
           ||||| || |||||||||||  ||||||| || |||| ||| || ||| |||| ||||||
Sbjct: 494 tatgcttctagctccctcttggcaaatgtcggaagaacaaacgctgccatatgcatctct 553

                                                                       
Query: 373 gaattgtaaaatctcatctctcgtccatctttagtagctccttcaatcttc-tcgattgg 431
           ||||| ||||| || ||||| | |||  |||||||||||||||| | |||| || |||||
Sbjct: 554 gaattataaaacctgatctcccttcccgctttagtagctccttcca-cttcttcaattgg 612

                                                                       
Query: 432 attcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaatccgat 491
           ||| ||||||||||  ||||  |||||||| || ||||| ||||||| || ||| || ||
Sbjct: 613 atttacaggagtcagaaagttgaccggtgggccatccttggcgcataacagaaacccaat 672

                                                                       
Query: 492 gacaccactaggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatac 551
            || ||||| || |||||||| ||||| ||||| |||||| | ||    ||||||||   
Sbjct: 673 caccccactcgggtatgttgggacactagcccatgcataggggacagaacccttgaaagt 732

                                                                       
Query: 552 ctcccgacagatagaaagcatatcctggattagatgtgtgtgcagccacatactttcagc 611
           ||| || || || |||||||| ||||| || | |||||| |||| ||||||||| |||||
Sbjct: 733 ctcacggcaaattgaaagcatgtcctgaatcaaatgtgtatgcaaccacatactctcagc 792

            
Query: 612 t 612
           |
Sbjct: 793 t 793

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>gb|AY110118.1| Zea mays CL7038_1 mRNA sequence
          Length = 1039

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 185/236 (78%)
 Strand = Plus / Plus

                                                                       
Query: 296 tttcagtggaagtgttatatgcctccagctccctctttacaaatgttggcagaataaaag 355
           |||||||||||  |  |||||| || ||||| ||| || |||| || || |||| ||| |
Sbjct: 461 tttcagtggaaacgcaatatgcttctagctctctccttgcaaaggtcgggagaacaaatg 520

                                                                       
Query: 356 cagccctatgaatctctgaattgtaaaatctcatctctcgtccatctttagtagctcctt 415
           | |||||||| |||||||| || |||||||| ||||| | |||| |||| ||||||||||
Sbjct: 521 ctgccctatgcatctctgagttataaaatctgatctcccttccagcttttgtagctcctt 580

                                                                       
Query: 416 caatcttctcgattggattcacaggagtcaagaagtccaccggtggaccttccttcgcgc 475
           | | ||| || |||||||| | ||||||||  |||| ||||  ||||||||| || || |
Sbjct: 581 ccagcttttcaattggatttataggagtcagaaagttcaccaatggaccttctttggcac 640

                                                                   
Query: 476 atagcaaaaatccgatgacaccactaggatatgttggaacacttgcccaggcatag 531
           ||||      ||| || || ||||| || |||||||| ||||||| ||| ||||||
Sbjct: 641 atagtnnnnntccaatcaccccactcgggtatgttgggacacttgtccatgcatag 696

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>emb|AM158913.1| Plantago major partial mRNA for spermidine synthase (spds1 gene)
          Length = 689

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 460 ggaccttccttcgcgcatagcaaaaatccgatgacaccactaggatatgttggaacactt 519
           ||||||||| | | |||||||| |||||| ||||||||||| |||||||| |||||| | 
Sbjct: 493 ggaccttccgttgagcatagcagaaatcctatgacaccactgggatatgtaggaacatta 434

                      
Query: 520 gcccaggcata 530
           ||||| |||||
Sbjct: 433 gcccatgcata 423

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                           
Query: 502     ggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccgacag 561
               |||||||| || ||||| | |||||||||||| ||    |||||||||  ||| || |||
Sbjct: 8727409 ggatatgtcgggacactcgtccaggcatagtggacagaacccttgaatgtctcacggcag 8727468

                                                                 
Query: 562     atagaaagcatatcctggattagatgtgtgtgcagccacatactttcagc 611
               || |||||||| |||||||| ||||| || |||| |||||| || |||||
Sbjct: 8727469 atcgaaagcatgtcctggataagatgcgtatgcaaccacatgctctcagc 8727518



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                           
Query: 427     attggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaat 486
               ||||||||  ||||||||| |||||  || ||||||||||| || || ||||||| ||| 
Sbjct: 8726894 attggatttgcaggagtcaggaagttgactggtggaccttctttggcacatagcagaaac 8726953

                             
Query: 487     ccgatgacaccact 500
               || || ||||||||
Sbjct: 8726954 ccaatcacaccact 8726967

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>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0463G12
          Length = 145403

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                          
Query: 502    ggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccgacag 561
              |||||||| || ||||| | |||||||||||| ||    |||||||||  ||| || |||
Sbjct: 134456 ggatatgtcgggacactcgtccaggcatagtggacagaacccttgaatgtctcacggcag 134515

                                                                
Query: 562    atagaaagcatatcctggattagatgtgtgtgcagccacatactttcagc 611
              || |||||||| |||||||| ||||| || |||| |||||| || |||||
Sbjct: 134516 atcgaaagcatgtcctggataagatgcgtatgcaaccacatgctctcagc 134565



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                          
Query: 427    attggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaat 486
              ||||||||  ||||||||| |||||  || ||||||||||| || || ||||||| ||| 
Sbjct: 133941 attggatttgcaggagtcaggaagttgactggtggaccttctttggcacatagcagaaac 134000

                            
Query: 487    ccgatgacaccact 500
              || || ||||||||
Sbjct: 134001 ccaatcacaccact 134014

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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052K15
          Length = 156250

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                         
Query: 502   ggatatgttggaacacttgcccaggcatagtgcacgccgcccttgaatacctcccgacag 561
             |||||||| || ||||| | |||||||||||| ||    |||||||||  ||| || |||
Sbjct: 26488 ggatatgtcgggacactcgtccaggcatagtggacagaacccttgaatgtctcacggcag 26547

                                                               
Query: 562   atagaaagcatatcctggattagatgtgtgtgcagccacatactttcagc 611
             || |||||||| |||||||| ||||| || |||| |||||| || |||||
Sbjct: 26548 atcgaaagcatgtcctggataagatgcgtatgcaaccacatgctctcagc 26597



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 427   attggattcacaggagtcaagaagtccaccggtggaccttccttcgcgcatagcaaaaat 486
             ||||||||  ||||||||| |||||  || ||||||||||| || || ||||||| ||| 
Sbjct: 25973 attggatttgcaggagtcaggaagttgactggtggaccttctttggcacatagcagaaac 26032

                           
Query: 487   ccgatgacaccact 500
             || || ||||||||
Sbjct: 26033 ccaatcacaccact 26046

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>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3,
             complete sequence
          Length = 116350

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 502   ggatatgttggaacacttgcccaggcata 530
             ||||||||||||||||||||||| |||||
Sbjct: 41306 ggatatgttggaacacttgcccatgcata 41278

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>gb|AY335900.1| Lycopersicon esculentum putative spermine synthase (SPM1) mRNA,
           complete cds
          Length = 1162

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 496 ccactaggatatgttggaacacttgcccaggcata 530
           |||||||||||||| |||||||| ||||| |||||
Sbjct: 873 ccactaggatatgtaggaacactggcccatgcata 839

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>emb|BX546477.9| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9,
             complete sequence
          Length = 58124

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   aaataaaatttggtaataaag 139
             |||||||||||||||||||||
Sbjct: 28842 aaataaaatttggtaataaag 28862

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>emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on chromosome 6 Contains the
              THBS2 gene for thrombospondin 2, two novel genes, a
              chromosome 6 open reading frame 55 (C6orf55) pseudogene and
              two CpG islands, complete sequence
          Length = 159175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 279    cttctccagtttctccttttc 299
              |||||||||||||||||||||
Sbjct: 106203 cttctccagtttctccttttc 106183

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>emb|AL596207.10| Mouse DNA sequence from clone RP23-336J1 on chromosome 11 Contains the 5'
              end of the Sparc gene for secreted acidic cysteine rich
              glycoprotein, the Atox1 gene for ATX1 (antioxidant protein
              1) homolog 1 (yeast), an upregulated during skeletal muscle
              growth 5 (Usmg5) pseudogene, the gene for
              Ras-GTPase-activating protein SH3-domain binding protein
              (G3bp-pending) (C87777), a novel gene, the Glra1 gene for
              glycine receptor, alpha 1 subunit, a novel gene, a
              ubiquitously expressed transcript (Uxt) pseudogene and one
              CpG island, complete sequence
          Length = 204037

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 578    ggattagatgtgtgtgcagccacat 602
              |||||| ||||||||||||||||||
Sbjct: 146137 ggattaaatgtgtgtgcagccacat 146113

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>emb|CR937028.1| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9,
             complete sequence
          Length = 58124

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   aaataaaatttggtaataaag 139
             |||||||||||||||||||||
Sbjct: 28842 aaataaaatttggtaataaag 28862

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>emb|BX323576.9| Zebrafish DNA sequence from clone DKEYP-77A12 in linkage group 7,
             complete sequence
          Length = 163069

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 491   tgacaccactaggatatgttg 511
             |||||||||||||||||||||
Sbjct: 51474 tgacaccactaggatatgttg 51454

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>dbj|AK158474.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930119H24 product:hypothetical protein,
            full insert sequence
          Length = 3275

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 327  cctctttacaaatgttggcag 347
            |||||||||||||||||||||
Sbjct: 2774 cctctttacaaatgttggcag 2754

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>emb|BX571674.7| Zebrafish DNA sequence from clone DKEY-193C22 in linkage group 5,
              complete sequence
          Length = 195181

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    catgtacctattgaaataaaa 126
              |||||||||||||||||||||
Sbjct: 177337 catgtacctattgaaataaaa 177317

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>emb|BX005327.9| Zebrafish DNA sequence from clone DKEY-65B16 in linkage group 7,
            complete sequence
          Length = 237129

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  tgacaccactaggatatgttg 511
            |||||||||||||||||||||
Sbjct: 2368 tgacaccactaggatatgttg 2388

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>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence
          Length = 116899

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 176   ctcgtgggggaagatggacaacata 200
             |||| ||||||||||||||||||||
Sbjct: 98676 ctcgagggggaagatggacaacata 98652

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>emb|BX247878.5| Zebrafish DNA sequence from clone CH211-266O5 in linkage group 7,
              complete sequence
          Length = 190715

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 491    tgacaccactaggatatgttg 511
              |||||||||||||||||||||
Sbjct: 138846 tgacaccactaggatatgttg 138866

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>dbj|AB072917.2| Malus x domestica MdSPDS2b mRNA forspermidine synthase, complete
           cds
          Length = 1276

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 352 aaagcagccctatgaatctctgaattgtaaaat 384
           ||||||||  ||||||||||||| |||||||||
Sbjct: 975 aaagcagctgtatgaatctctgagttgtaaaat 943

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>dbj|AB072916.2| Malus x domestica MdSPDS2a mRNA forspermidine synthase, complete cds
          Length = 1359

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 352  aaagcagccctatgaatctctgaattgtaaaat 384
            ||||||||  ||||||||||||| |||||||||
Sbjct: 1047 aaagcagctgtatgaatctctgagttgtaaaat 1015

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>dbj|AB072915.2| Malus x domestica MdSPDS1 mRNA forspermidine synthase, complete cds
          Length = 1407

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 352  aaagcagccctatgaatctctgaattgtaaaatctca 388
            ||||||||  |||||||||| || |||||||||||||
Sbjct: 1090 aaagcagctgtatgaatctcagagttgtaaaatctca 1054

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>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence
          Length = 168158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acacaccatacacactcagt 54
              ||||||||||||||||||||
Sbjct: 164776 acacaccatacacactcagt 164757

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>ref|XM_654820.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2308.2), mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   cactagctgcaacacaccat 43
            ||||||||||||||||||||
Sbjct: 2258 cactagctgcaacacaccat 2277

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>gb|BT014416.1| Lycopersicon esculentum clone 133724F, mRNA sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 499  ctaggatatgttggaacacttgcccaggcata 530
            ||||||||||| |||||||| ||||| |||||
Sbjct: 1185 ctaggatatgtaggaacactggcccatgcata 1154

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>gb|AC025724.3| Caenorhabditis elegans cosmid Y67D8C, complete sequence
          Length = 103670

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   tacctattgaaataaaatttggta 133
             |||||||| |||||||||||||||
Sbjct: 48809 tacctattcaaataaaatttggta 48832

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>gb|AC125327.4| Mus musculus BAC clone RP23-346B17 from chromosome 6, complete sequence
          Length = 224846

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 513    aacacttgcccaggcatagtgcac 536
              ||||||||| ||||||||||||||
Sbjct: 195077 aacacttgcacaggcatagtgcac 195054

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>gb|AC121962.3| Mus musculus chromosome UNK clone RP24-255I5, complete sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 513   aacacttgcccaggcatagtgcac 536
             ||||||||| ||||||||||||||
Sbjct: 14618 aacacttgcacaggcatagtgcac 14641

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>gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, complete sequence
          Length = 170184

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 276    tggcttctccagtttctccttttc 299
              ||||||||||| ||||||||||||
Sbjct: 108077 tggcttctccattttctccttttc 108100

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>emb|Z94057.1|HS518E13 Human DNA sequence from clone RP3-518E13 on chromosome 1q25 Contains
            a novel transcript and the 3' end of the TNR gene for
            tenascin R (restrictin, janusin), complete sequence
          Length = 80124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  ctccctctttacaaatgttg 343
            ||||||||||||||||||||
Sbjct: 1818 ctccctctttacaaatgttg 1837

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>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3
              Contains the 5' end of the GRM1 gene for metabotropic
              glutamate receptor 1, complete sequence
          Length = 156935

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    attgaaataaaatttggtaa 134
              ||||||||||||||||||||
Sbjct: 112529 attgaaataaaatttggtaa 112548

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>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the
             3' end of a novel gene, complete sequence
          Length = 203827

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   atgtgtgtgcagccacatac 604
             ||||||||||||||||||||
Sbjct: 63054 atgtgtgtgcagccacatac 63035

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>dbj|AK129026.1| Mus musculus cDNA fis, clone TRACH3037267, highly similar to Mus
            musculus flavin containing monooxygenase 2 (Fmo2)
          Length = 3591

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 578  ggattagatgtgtgtgcagccaca 601
            |||||||| |||||||||||||||
Sbjct: 3195 ggattagaagtgtgtgcagccaca 3172

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>ref|XM_691445.1| PREDICTED: Danio rerio similar to Alpha-tectorin precursor
            (LOC568132), mRNA
          Length = 1962

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 14   gctcctttttcactagctgcaacacacc 41
            |||||||||| | |||||||||||||||
Sbjct: 1618 gctccttttttattagctgcaacacacc 1591

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>gb|AC153818.5| Mus musculus 6 BAC RP23-345F4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 193079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 513    aacacttgcccaggcatagtgcac 536
              ||||||||| ||||||||||||||
Sbjct: 139251 aacacttgcacaggcatagtgcac 139274

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>gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequence
          Length = 116498

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 191   ggacaacataggggtgtttgtccc 214
             ||||||||||| ||||||||||||
Sbjct: 97282 ggacaacatagaggtgtttgtccc 97305

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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 34     aacacaccatacacactcagtgacactc 61
              ||||||||||||||||||| | ||||||
Sbjct: 193786 aacacaccatacacactcattcacactc 193759

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>gb|AC138071.2| Homo sapiens chromosome 3 clone RP11-504G20, complete sequence
          Length = 194062

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   tggcttctccagtttctccttttc 299
             ||||||||||| ||||||||||||
Sbjct: 42844 tggcttctccattttctccttttc 42867

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     cgggtctcgtgggggaagat 190
               ||||||||||||||||||||
Sbjct: 1482823 cgggtctcgtgggggaagat 1482804

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>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence
          Length = 192892

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   ggattagatgtgtgtgcagccaca 601
             |||||||| |||||||||||||||
Sbjct: 51674 ggattagaagtgtgtgcagccaca 51697

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     cgggtctcgtgggggaagat 190
               ||||||||||||||||||||
Sbjct: 1157518 cgggtctcgtgggggaagat 1157499

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>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence
          Length = 233632

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    acacaccatacacactcagt 54
             ||||||||||||||||||||
Sbjct: 52857 acacaccatacacactcagt 52838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,502,246
Number of Sequences: 3902068
Number of extensions: 5502246
Number of successful extensions: 106875
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106709
Number of HSP's gapped (non-prelim): 156
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result