ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16m21 |
|---|---|
| Clone Library Name | barley_pub |
>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 324 Score = 201 bits (511), Expect = 1e-51 Identities = 96/96 (100%), Positives = 96/96 (100%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ Sbjct: 229 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 288 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 258 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ Sbjct: 289 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWEQ 324
>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 321 Score = 122 bits (306), Expect = 7e-28 Identities = 60/94 (63%), Positives = 67/94 (71%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L+SL +S F+EDWV+IG PAK KVQ E F DQCT EKEAVNVSL Sbjct: 216 GGIKGLMSLPADGSESTAFIEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSLG 275 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV+EG+ TL L GGHYDFV+G FE W Sbjct: 276 NLLTYPFVREGLVKKTLALKGGHYDFVNGGFELW 309
>CAH2_ARATH (P42737) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) Length = 259 Score = 119 bits (299), Expect = 4e-27 Identities = 58/95 (61%), Positives = 68/95 (71%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L+S ++S F+EDWV+I PAK KV E S F+DQC E+EAVNVSL Sbjct: 154 GGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLA 213 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETWE 261 NLLTYPFV+EGV GTL L GG+YDFV+G FE WE Sbjct: 214 NLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWE 248
>CAHX_FLABR (P46511) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 116 bits (291), Expect = 4e-26 Identities = 55/94 (58%), Positives = 65/94 (69%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL Sbjct: 225 GGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLG 284 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 285 NLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 329 Score = 116 bits (291), Expect = 4e-26 Identities = 55/94 (58%), Positives = 65/94 (69%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL Sbjct: 224 GGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLG 283 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 284 NLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 317
>CAHX_FLABI (P46510) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 330 Score = 115 bits (289), Expect = 6e-26 Identities = 55/94 (58%), Positives = 65/94 (69%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L++ D S F+EDWV++ PAK KV E DDQC + EKEAVNVSL Sbjct: 225 GGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLG 284 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 285 NLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELW 318
>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase| 1) Length = 330 Score = 115 bits (288), Expect = 8e-26 Identities = 55/94 (58%), Positives = 64/94 (68%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L++ D S F+EDWV++ PAK KV E DDQC EKEAVNVSL Sbjct: 225 GGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLG 284 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++G+ N TL L GGHYDFV+G FE W Sbjct: 285 NLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELW 318
>CAHC_ARATH (P27140) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 347 Score = 114 bits (286), Expect = 1e-25 Identities = 55/94 (58%), Positives = 66/94 (70%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L+S ++S F+EDWV+I PAK KV +E F+DQC E+EAVNVSL Sbjct: 231 GGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLA 290 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV+EG+ GTL L GG+YDFV G FE W Sbjct: 291 NLLTYPFVREGLVKGTLALKGGYYDFVKGAFELW 324
>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase| 2) (Fragment) Length = 190 Score = 113 bits (283), Expect = 3e-25 Identities = 51/94 (54%), Positives = 65/94 (69%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L+S+ D + F+E WV++G PAK KV+ C ++ F D CT EKEAVNVSL Sbjct: 85 GGIKGLMSIPDDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLG 144 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++ + N L L G HYDFV+G F+ W Sbjct: 145 NLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLW 178
>CAHC_PEA (P17067) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) [Contains: Carbonic anhydrase, 27 kDa isoform; Carbonic anhydrase, 25 kDa isoform] Length = 328 Score = 113 bits (282), Expect = 4e-25 Identities = 55/94 (58%), Positives = 64/94 (68%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK LLS S F+E+WV+IG PAK KV+ + PF + CT EKEAVN SL Sbjct: 223 GGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLG 282 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV+EG+ N TL L GG+YDFV G FE W Sbjct: 283 NLLTYPFVREGLVNKTLALKGGYYDFVKGSFELW 316
>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)| (Carbonate dehydratase) Length = 319 Score = 112 bits (280), Expect = 7e-25 Identities = 54/94 (57%), Positives = 65/94 (69%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 GGIK L+S D + F+EDWV+I PAK KV E + F +QCT EKEAVNVSL Sbjct: 214 GGIKGLMSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLG 273 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFETW 264 NLLTYPFV++G+ TL L GG+YDFV+G FE W Sbjct: 274 NLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELW 307
>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)| Length = 272 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/90 (30%), Positives = 43/90 (47%) Frame = -3 Query: 545 GGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQ 366 G +K LL L +D V DW++ ++ V + DD +L E V ++ Sbjct: 102 GAMKGLLKLNQLQED-MPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIE 160 Query: 365 NLLTYPFVKEGVTNGTLKLVGGHYDFVSGK 276 NL TYP V+ + G L++ G Y+ SG+ Sbjct: 161 NLKTYPIVRSRLFQGKLQIFGWIYEVESGE 190
>CYNT_HELPJ (Q9ZN54) Carbonic anhydrase (EC 4.2.1.1)| Length = 221 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -3 Query: 491 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 315 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E V N L Sbjct: 122 YIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNEL 181 Query: 314 KLVGGHYDFVSGK 276 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>CYNT_HELPY (O24855) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 221 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -3 Query: 491 FVEDWVRIGFPAKKKVQTECA-SMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTL 315 ++ +W++ P K++++ S F + + E+ + L NLL+Y F++E + L Sbjct: 122 YIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNEL 181 Query: 314 KLVGGHYDFVSGK 276 K+ G HY +G+ Sbjct: 182 KIFGWHYIIETGR 194
>ACCD_PINTH (P52769) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 321 Score = 33.1 bits (74), Expect = 0.52 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +3 Query: 177 ALHSHRSADILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 356 AL+ H+ L+Y+ + S TGG + F + GD ++ G ++++ +G Sbjct: 220 ALYIHQKEKKLLYISILTSPTTGG---VTASFGMLGDIIIAEPKAYIAFAGKRVIEQTLG 276 Query: 357 QEVLE 371 Q+V+E Sbjct: 277 QKVIE 281
>ACCD_CHLVU (P56293) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| beta (EC 6.4.1.2) (ACCase beta chain) Length = 411 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +3 Query: 177 ALHSHRSADILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHTLLDERVG 356 ALH H++ L+Y+ + S TGG + F + GD + L G G ++++ + Sbjct: 192 ALHIHQNCAKLLYISVLTSPTTGG---VTASFAMLGDLLFAEPKALIGFAGRRVIEQTLQ 248 Query: 357 QEV 365 +++ Sbjct: 249 EQL 251
>CYNT_ECOLI (P0ABE9) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.4 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -3 Query: 503 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 324 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 323 GTLKLVGGHYDFVSGKFETWE 261 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>CYNT_ECO57 (P0ABF0) Carbonic anhydrase 1 (EC 4.2.1.1)| Length = 219 Score = 30.0 bits (66), Expect = 4.4 Identities = 21/81 (25%), Positives = 33/81 (40%) Frame = -3 Query: 503 DSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 324 D V W+R A+ + S + + +E V L NL T+P V+ + Sbjct: 114 DHMPAVSHWLRYADSARVVNEARPHS-DLPSKAAAMVRENVIAQLANLQTHPSVRLALEE 172 Query: 323 GTLKLVGGHYDFVSGKFETWE 261 G + L G YD SG ++ Sbjct: 173 GRIALHGWVYDIESGSIAAFD 193
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +1 Query: 304 PTSLRVPLVTPSLTNG*VKRFWRDTLTA----SFSRTVHWSSKGMEAHSVCT 447 P L++P +T ++ +++W + LTA S +RT +W SK + H + T Sbjct: 390 PEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPT 441
>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 192 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 106 D A+PW +P I + PDGP+ I H + Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182
>CPXM2_HUMAN (Q8N436) Carboxypeptidase-like protein X2 precursor| Length = 756 Score = 29.6 bits (65), Expect = 5.8 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +1 Query: 55 HSSTIPRQQNGEEKKVLLLMANSHRAIRHPVLDNNGYALPWHCIHID 195 H S +P + + +++ M HR I+ V D++G +P I ++ Sbjct: 618 HESQLPEEWENNRESLIVFMEQVHRGIKGLVRDSHGKGIPNAIISVE 664
>LPSBP_PERAM (P26305) Hemolymph lipopolysaccharide-binding protein precursor| (LPS-binding protein) (LPS-BP) Length = 256 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -3 Query: 401 VLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 267 ++ E + LQNL + EG TN +G H FV G+F T Sbjct: 157 IINSEDESKVLQNLFSKVTKTEGATNNDYIFIGIHDRFVEGEFIT 201
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +3 Query: 312 LEGSVGHTLLDERVGQEVLE-------GHVDGLLLQDGALVIE 419 LEG+VG+ +D GQEVL HV G L+ ALV++ Sbjct: 126 LEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLD 168
>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]| Length = 1257 Score = 28.9 bits (63), Expect = 9.9 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 20/98 (20%) Frame = +3 Query: 183 HSHRSADILIYVRLYMSELTGGEDLLLPCFELAGDEVVVAADELEGSVGHT-------LL 341 H+ + +++ +L G ++ ELAGD++V+ DE+E G T ++ Sbjct: 545 HNFAAEGFVVHNTTLSDQLLAGAGMISE--ELAGDQLVLDFDEMEQERGITIDAANVSMV 602 Query: 342 DERVGQEVL------EGHVD-------GLLLQDGALVI 416 E G+E L GHVD + DGA+V+ Sbjct: 603 HEYEGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVV 640
>PP4R3_CANGA (Q6FR44) Serine/threonine-protein phosphatase 4 regulatory subunit| 3 (PP4R3) Length = 842 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 4 KLIYDVFRSQXRSNYASHSSTIPRQQNGEEKKV 102 KL+Y F Q R Y HS +P NG+++K+ Sbjct: 751 KLLYITFVKQLREQYKEHSKLLP---NGKKRKI 780
>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein| Length = 1589 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/81 (28%), Positives = 35/81 (43%) Frame = +1 Query: 304 PTSLRVPLVTPSLTNG*VKRFWRDTLTASFSRTVHWSSKGMEAHSVCTFFLAGNPILTQS 483 PT+ VP+ +P +DT T S T S +EA S L+ +S Sbjct: 1136 PTATLVPIGSPKTPVS-----GKDTCTTPKSSTPATVSASVEASSSTGEALSNGDASDRS 1190 Query: 484 STKWKESSAPSLSESRALIPP 546 ST K ++ P+ +S A + P Sbjct: 1191 STPSKGATTPTSKQSNAAVQP 1211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,548,850 Number of Sequences: 219361 Number of extensions: 1585535 Number of successful extensions: 5198 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5196 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
