Clone Name | rbasd16m21 |
---|---|
Clone Library Name | barley_pub |
>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds Length = 1529 Score = 1003 bits (506), Expect = 0.0 Identities = 537/547 (98%), Gaps = 2/547 (0%) Strand = Plus / Minus Query: 1 attaaacttatatatgatgtctttcgatcacaagnacgatcaaattatgcatcacatagc 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1473 attaaacttatatatgatgtctttcgatcacaag-acgatcaaattatgcatcacatagc 1415 Query: 61 agtacaattcctcgtcagcaaaatggtgaagnnnnnnnggttctattgcttatggcaaat 120 |||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct: 1414 agtacaattcctcgtcag-aaaatggtgaagaaaaaaaggttctattgcttatggcaaat 1356 Query: 121 tcacatcgggccatccggcatccagtactggacaataacgggtacgcactcccatggcat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1355 tcacatcgggccatccggcatccagtactggacaataacgggtacgcactcccatggcat 1296 Query: 181 tgcattcacatcgatcggccgatatcttgatatatgtacgtttgtatatgtcggagttaa 240 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 tgcattcacatcgatcggacgatatcttgatatatgtacgtttgtatatgtcggagttaa 1236 Query: 241 ccggtggggaagatttactgctcccatgtttcgaacttgccggagacgaagtcgtagtgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1235 ccggtggggaagatttactgctcccatgtttcgaacttgccggagacgaagtcgtagtgg 1176 Query: 301 ccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacgggtaggtcaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 ccgccgacgagcttgagggttccgttggtcacaccctccttgacgaacgggtaggtcaag 1116 Query: 361 aggttctggagggacacgttgacggcctccttctccaggacggtgcactggtcatcgaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 aggttctggagggacacgttgacggcctccttctccaggacggtgcactggtcatcgaaa 1056 Query: 421 ggcatggaggcgcactcagtctgcaccttcttcttggccgggaacccgatcctgacccag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1055 ggcatggaggcgcactcagtctgcaccttcttcttggccgggaacccgatcctgacccag 996 Query: 481 tcctcaacgaagtggaaggagtcgtctgcgccatccttgagcgagagcagagccttgatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 tcctcaacgaagtggaaggagtcgtctgcgccatccttgagcgagagcagagccttgatt 936 Query: 541 ccaccgc 547 ||||||| Sbjct: 935 ccaccgc 929
>ref|NM_192260.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 797 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 738 Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| Sbjct: 737 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 678 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 677 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 618 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||||| ||| |||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct: 617 gcggggaaaccggtcctgacccagtcctcgacgaagtggaaggagtctggtgctccatcc 558 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || |||||||||||||||| Sbjct: 557 ttgagtgagaggagggccttgattccaccgc 527
>dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G17, full insert sequence Length = 1163 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 847 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 788 Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| Sbjct: 787 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 728 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 727 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 668 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||||| ||| |||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct: 667 gcggggaaaccggtcctgacccagtcctcgacgaagtggaaggagtctggtgctccatcc 608 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || |||||||||||||||| Sbjct: 607 ttgagtgagaggagggccttgattccaccgc 577
>dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B12, full insert sequence Length = 1165 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 846 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 787 Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| Sbjct: 786 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 727 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 726 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 667 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||||| ||| |||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct: 666 gcggggaaaccggtcctgacccagtcctcgacgaagtggaaggagtctggtgctccatcc 607 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || |||||||||||||||| Sbjct: 606 ttgagtgagaggagggccttgattccaccgc 576
>gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, complete cds Length = 1169 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 841 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 782 Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| Sbjct: 781 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 722 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 721 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 662 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||||| ||| |||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct: 661 gcggggaaaccggtcctgacccagtcctcgacgaagtggaaggagtctggtgctccatcc 602 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || |||||||||||||||| Sbjct: 601 ttgagtgagaggagggccttgattccaccgc 571
>gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase mRNA, complete cds Length = 1148 Score = 268 bits (135), Expect = 2e-68 Identities = 237/271 (87%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 832 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 773 Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| Sbjct: 772 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 713 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 | || || ||| |||||||||||||||| |||||| ||| ||||| |||||||||||| Sbjct: 712 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 653 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||||| ||| |||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct: 652 gcggggaaaccggtcctgacccagtcctcgacgaagtggaaggagtctggtgctccatcc 593 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || |||||||||||||||| Sbjct: 592 ttgagtgagaggagggccttgattccaccgc 562
>gb|AY109272.1| Zea mays PCO064414 mRNA sequence Length = 978 Score = 174 bits (88), Expect = 2e-40 Identities = 223/268 (83%) Strand = Plus / Minus Query: 280 ccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctcc 339 ||||| ||||||||||||||| ||||||| ||||||||||| || |||| || || ||| Sbjct: 719 ccggacacgaagtcgtagtgggcgccgaccagcttgagggtccccttggccagcccttcc 660 Query: 340 ttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccagg 399 | |||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct: 659 tggacgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctccagg 600 Query: 400 acggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggcc 459 | || ||||||||||||||| |||| ||||||| ||| ||| |||||| |||||| Sbjct: 599 atggagcactggtcatcgaagggcacggaggcgtgctctttcttcaccttgaccttggca 540 Query: 460 gggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatccttg 519 ||||| |||||| ||||||||| ||| |||||||||||| |||| ||| || |||| | Sbjct: 539 gggaagccgatcttgacccagttctcgacgaagtggaagttgtcgggtgcaccgtcctgg 480 Query: 520 agcgagagcagagccttgattccaccgc 547 || |||||||| ||| ||| ||||||| Sbjct: 479 agggagagcagcgcccggatgccaccgc 452
>gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase mRNA, complete cds Length = 2184 Score = 149 bits (75), Expect = 1e-32 Identities = 177/211 (83%) Strand = Plus / Minus Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 |||||||| || |||||| || |||||||||||| |||||||| ||||||||||||||| Sbjct: 1277 tccttgaccaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 1218 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 |||| || ||||||||||||||| |||| ||| ||| ||| ||| |||||| |||||| Sbjct: 1217 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 1158 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||| |||||||||||||||||||| |||||||||||| |||| ||||| ||| Sbjct: 1157 gcagggctgccgatcctgacccagtcctccacgaagtggaagttgtcgggcgcgccgtcc 1098 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || ||| |||| ||||||| Sbjct: 1097 ttgagggagaggagcgccctgatgccaccgc 1067 Score = 141 bits (71), Expect = 3e-30 Identities = 176/211 (83%) Strand = Plus / Minus Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||| |||||| || |||||||||||| |||||||| ||||||||||||||| Sbjct: 671 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 612 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 |||| || ||||||||||||||| |||| ||| ||| ||| ||| |||||| |||||| Sbjct: 611 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 552 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||| |||||||||||||||||||| |||||| |||| |||| ||||| ||| Sbjct: 551 gcagggctgccgatcctgacccagtcctccacgaaggtgaagttgtcgggcgcgccgtcc 492 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || ||| |||| ||||||| Sbjct: 491 ttgagggagaggagcgccctgatgccaccgc 461 Score = 113 bits (57), Expect = 6e-22 Identities = 213/265 (80%) Strand = Plus / Minus Query: 283 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 342 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1934 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1875 Query: 343 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 402 ||||| ||||||||| |||||||| ||||||||||| |||||||||||||| || | | Sbjct: 1874 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1815 Query: 403 gtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggccggg 462 | |||||||||||||| |||| |||||| ||| ||| |||||| ||||||| | Sbjct: 1814 gaccactggtcatcgaacggcaccgaggcgtgctctttctttaccttcatcttggcaatg 1755 Query: 463 aacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatccttgagc 522 || ||||| | ||||||||||| ||||||||||||| ||| |||||| |||| ||| Sbjct: 1754 aaggcgatcttaacccagtcctcgacgaagtggaaggtgtcaggtgcgccgtcctggagt 1695 Query: 523 gagagcagagccttgattccaccgc 547 ||||| || ||| |||| ||||||| Sbjct: 1694 gagaggagcgccctgatgccaccgc 1670
>gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds Length = 1920 Score = 141 bits (71), Expect = 3e-30 Identities = 176/211 (83%) Strand = Plus / Minus Query: 337 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 396 ||||||||||| |||||| || |||||||||||| |||||||| ||||||||||||||| Sbjct: 950 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 891 Query: 397 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 456 |||| || ||||||||||||||| |||| ||| ||| ||| ||| |||||| |||||| Sbjct: 890 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 831 Query: 457 gccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatcc 516 || ||| |||||||||||||||||||| |||||| |||| |||| ||||| ||| Sbjct: 830 gcagggctgccgatcctgacccagtcctccacgaaggtgaagttgtcgggcgcgccgtcc 771 Query: 517 ttgagcgagagcagagccttgattccaccgc 547 ||||| ||||| || ||| |||| ||||||| Sbjct: 770 ttgagggagaggagcgccctgatgccaccgc 740 Score = 137 bits (69), Expect = 4e-29 Identities = 216/265 (81%) Strand = Plus / Minus Query: 283 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 342 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551 Query: 343 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 402 ||||| ||||||||| |||||||| ||||||||||| |||||||||||||| || | | Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491 Query: 403 gtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggccggg 462 | ||||||||||||||| |||| |||||| ||| ||| |||||| ||||||| | Sbjct: 1490 gagcactggtcatcgaacggcaccgaggcgtgctctttctttaccttcatcttggcaatg 1431 Query: 463 aacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatccttgagc 522 || |||||| | ||||||||||| ||||||||||||| || | ||||||| |||| ||| Sbjct: 1430 aagccgatcttaacccagtcctcgacgaagtggaaggtgtaggctgcgccgtcctggagt 1371 Query: 523 gagagcagagccttgattccaccgc 547 ||||| || ||| |||| ||||||| Sbjct: 1370 gagaggagcgccctgatgccaccgc 1346
>gb|AY109373.1| Zea mays CL2331_1 mRNA sequence Length = 2552 Score = 129 bits (65), Expect = 1e-26 Identities = 215/265 (81%) Strand = Plus / Minus Query: 283 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 342 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551 Query: 343 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 402 ||||| ||||||||| |||||||| ||||||||||| |||||||||||||| || | | Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491 Query: 403 gtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggccggg 462 | ||||||||||||||| |||| |||||| ||| ||| |||||| ||||||| | Sbjct: 1490 gagcactggtcatcgaacggcaccgaggcgtgctctttctttaccttcatcttggcaatg 1431 Query: 463 aacccgatcctgacccagtcctcaacgaagtggaaggagtcgtctgcgccatccttgagc 522 || |||||| | ||||||||||| ||||||||||||| ||| |||||| |||| ||| Sbjct: 1430 aagccgatcttaacccagtcctcgacgaagtggaaggtgtcaggtgcgccgtcctggagg 1371 Query: 523 gagagcagagccttgattccaccgc 547 ||||| || ||| |||| ||||||| Sbjct: 1370 gagaggagcgccctgatgccaccgc 1346 Score = 91.7 bits (46), Expect = 2e-15 Identities = 133/162 (82%) Strand = Plus / Minus Query: 386 cctccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgca 445 ||||||||||||||| || ||||||||||||||| |||| ||| ||| ||| ||| || Sbjct: 901 cctccttctccaggatggagcactggtcatcgaacggcacggacgcgtgctctttcttca 842 Query: 446 ccttcttcttggccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcgt 505 |||| |||||||| ||| |||||||||||||||||||| |||||| |||| |||| Sbjct: 841 ccttgttcttggcagggctgccgatcctgacccagtcctccacgaaggtgaagttgtcgg 782 Query: 506 ctgcgccatccttgagcgagagcagagccttgattccaccgc 547 ||||| |||||||| ||||| || ||| |||| ||||||| Sbjct: 781 gcgcgccgtccttgagggagaggagcgccctgatgccaccgc 740
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 25698466 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 25698407 Query: 337 tccttgacgaacgggtaggtcaagaggttct 367 ||||||||||||||||||||| |||||||| Sbjct: 25698406 tccttgacgaacgggtaggtcttgaggttct 25698376 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 389 ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 448 ||||||||| || || ||| |||||||||||||||| |||||| ||| ||||| |||| Sbjct: 25698164 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 25698105 Query: 449 tcttcttggccgggaacccgatcctgacccagtcctcaacgaagtgg 495 |||||||||| ||||| ||| |||||||||||||||| ||||||||| Sbjct: 25698104 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaagtgg 25698058 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 511 ccatccttgagcgagagcagagccttgattccaccgc 547 ||||||||||| ||||| || |||||||||||||||| Sbjct: 25697883 ccatccttgagtgagaggagggccttgattccaccgc 25697847
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 145272 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 145213 Query: 337 tccttgacgaacgggtaggtcaagaggttct 367 ||||||||||||||||||||| |||||||| Sbjct: 145212 tccttgacgaacgggtaggtcttgaggttct 145182 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 389 ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 448 ||||||||| || || ||| |||||||||||||||| |||||| ||| ||||| |||| Sbjct: 144970 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 144911 Query: 449 tcttcttggccgggaacccgatcctgacccagtcctcaacgaagtgg 495 |||||||||| ||||| ||| |||||||||||||||| ||||||||| Sbjct: 144910 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaagtgg 144864 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 511 ccatccttgagcgagagcagagccttgattccaccgc 547 ||||||||||| ||||| || |||||||||||||||| Sbjct: 144689 ccatccttgagtgagaggagggccttgattccaccgc 144653
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 930 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 871 Query: 337 tccttgacgaacgggtaggtcaagaggttct 367 ||||||||||||||||||||| |||||||| Sbjct: 870 tccttgacgaacgggtaggtcttgaggttct 840 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 389 ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 448 ||||||||| || || ||| |||||||||||||||| |||||| ||| ||||| |||| Sbjct: 628 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 569 Query: 449 tcttcttggccgggaacccgatcctgacccagtcctcaacgaagtgg 495 |||||||||| ||||| ||| |||||||||||||||| ||||||||| Sbjct: 568 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaagtgg 522 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 511 ccatccttgagcgagagcagagccttgattccaccgc 547 ||||||||||| ||||| || |||||||||||||||| Sbjct: 347 ccatccttgagtgagaggagggccttgattccaccgc 311
>gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mRNA, complete cds Length = 1208 Score = 125 bits (63), Expect = 2e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 285 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 344 |||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| || Sbjct: 864 gacgaagtcgtagtggccgccgaccagcttgagggagccgttggacacaccttccttcac 805 Query: 345 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggt 404 | |||||||||| |||||| | ||||| |||||||||||||||||||||| || || Sbjct: 804 ccaggggtaggtcaggaggttgtacagggagacgttgacggcctccttctccaagatgga 745 Query: 405 gcactggtcatcgaa 419 ||||||||| ||||| Sbjct: 744 gcactggtcgtcgaa 730 Score = 85.7 bits (43), Expect = 1e-13 Identities = 88/103 (85%) Strand = Plus / Minus Query: 445 accttcttcttggccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcg 504 |||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||| Sbjct: 704 accttcttcttggcgaggaagccgatcctgacccagtcctcgacgaagtggaagttgtcg 645 Query: 505 tctgcgccatccttgagcgagagcagagccttgattccaccgc 547 ||||||| |||| | ||||| || |||||||| ||||||| Sbjct: 644 gctgcgccgtcctgcattgagaggagcgccttgatgccaccgc 602
>gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mRNA, complete cds Length = 1034 Score = 125 bits (63), Expect = 2e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 285 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 344 |||||||||||||||||||||||| |||||||||| ||||||| ||| || ||||| || Sbjct: 703 gacgaagtcgtagtggccgccgaccagcttgagggacccgttggacacgccttccttcac 644 Query: 345 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggt 404 | |||||||||| |||||| | |||||| |||||||| ||||||||||||| || || Sbjct: 643 ccaggggtaggtcaggaggttgtagagggagacgttgactgcctccttctccaagatgga 584 Query: 405 gcactggtcatcgaa 419 ||||||||||||||| Sbjct: 583 gcactggtcatcgaa 569 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 445 accttcttcttggccgggaacccgatcctgacccagtcctcaacgaagtggaaggagtcg 504 ||||||||||| || |||| |||||||||||||| ||||| |||||||||||| |||| Sbjct: 543 accttcttcttcgcgaggaagccgatcctgacccaatcctcgacgaagtggaagttgtcg 484 Query: 505 tctgcgccatccttgagcgagagcagagccttgattccaccgc 547 |||||||||||| | ||||| || |||||||| ||||||| Sbjct: 483 gctgcgccatcctgcatggagaggagcgccttgatgccaccgc 441
>dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, complete cds Length = 8532 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 277 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 336 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct: 8047 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 7988 Query: 337 tccttgacgaacgggtaggtcaagaggttct 367 ||||||||||||||||||||| |||||||| Sbjct: 7987 tccttgacgaacgggtaggtcttgaggttct 7957 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 389 ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 448 ||||||||| || || ||| |||||||||||||||| |||||| ||| ||||| |||| Sbjct: 7745 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 7686 Query: 449 tcttcttggccgggaacccgatcctgacccagtcctcaacgaagtgg 495 |||||||||| ||||| ||| |||||||||||||||| ||||||||| Sbjct: 7685 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaagtgg 7639 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 511 ccatccttgagcgagagcagagccttgattccaccgc 547 ||||||||||| ||||| || |||||||||||||||| Sbjct: 7464 ccatccttgagtgagaggagggccttgattccaccgc 7428
>gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog mRNA, partial cds Length = 210 Score = 97.6 bits (49), Expect = 4e-17 Identities = 115/137 (83%) Strand = Plus / Minus Query: 283 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 342 ||||| |||||||||||| |||||| ||||||||||| || || | | || |||||| Sbjct: 171 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 112 Query: 343 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 402 ||||| ||||||||| |||||||| ||||||||||| |||||||||||||| || | | Sbjct: 111 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 52 Query: 403 gtgcactggtcatcgaa 419 | ||||||||||||||| Sbjct: 51 gagcactggtcatcgaa 35
>dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-212D19, complete sequence Length = 138197 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tatatgtacgtttgtatatgt 231 ||||||||||||||||||||| Sbjct: 80852 tatatgtacgtttgtatatgt 80872
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 acgttgacggcctccttctccagga 400 |||||||||||||||||| |||||| Sbjct: 2833138 acgttgacggcctccttcgccagga 2833114
>ref|XM_467687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1138 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 102 ggccgccgacgagcttgagg 121
>ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019M20.11), mRNA Length = 642 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 189 ggccgccgacgagcttgagg 208
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence Length = 252420 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 tgatatatgtacgtttgtatatgt 231 |||||||||||| ||||||||||| Sbjct: 127219 tgatatatgtacatttgtatatgt 127196
>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3 Contains the 5' end of the gene for a novel protein (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG) pseudogene and a CpG island, complete sequence Length = 128216 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ttctattgcttatggcaaat 120 |||||||||||||||||||| Sbjct: 55862 ttctattgcttatggcaaat 55881
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 110220 ggccgccgacgagcttgagg 110239
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 14930442 ggccgccgacgagcttgagg 14930461
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 28350077 ggccgccgacgagcttgagg 28350096
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 30832078 ggccgccgacgagcttgagg 30832097
>gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, complete sequence Length = 189466 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 atatatgtacgtttgtatat 229 |||||||||||||||||||| Sbjct: 169067 atatatgtacgtttgtatat 169048
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aacttatatatgatgtcttt 24 |||||||||||||||||||| Sbjct: 320903 aacttatatatgatgtcttt 320922
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 62655 ggccgccgacgagcttgagg 62674
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 148106 ggccgccgacgagcttgagg 148125
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 15655 ggccgccgacgagcttgagg 15674
>dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C02, full insert sequence Length = 1138 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 102 ggccgccgacgagcttgagg 121
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 59918 ggccgccgacgagcttgagg 59937
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccgccgacgagcttgagg 318 |||||||||||||||||||| Sbjct: 14938683 ggccgccgacgagcttgagg 14938702
>gb|AF018256.1|AF018256 Ambystoma tigrinum glutamate transporter 1 (sEAAT1) mRNA, complete cds Length = 1980 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tctgcaccttcttcttggcc 459 |||||||||||||||||||| Sbjct: 265 tctgcaccttcttcttggcc 246 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,447,231 Number of Sequences: 3902068 Number of extensions: 3447231 Number of successful extensions: 56885 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56618 Number of HSP's gapped (non-prelim): 261 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)