ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
2dbj|AK102317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
4dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
5dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
6gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.2
7emb|Z48795.1|CER05H5 Caenorhabditis elegans Cosmid R05H5, comple... 40 7.2
8emb|AL591400.8| Human DNA sequence from clone RP11-65C6 on chrom... 40 7.2
9emb|AL157934.17| Human DNA sequence from clone RP11-449M9 on chr... 40 7.2
10gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cance... 40 7.2
11emb|AJ576102.1|BAM576102 Bacillus amyloliquefaciens partial geno... 40 7.2
12gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Can... 40 7.2
13gb|AC023674.4| Drosophila melanogaster 3L BAC RP98-11E6 (Roswell... 40 7.2
14gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswel... 40 7.2
15ref|NM_139719.2| Drosophila melanogaster CG10592-RA (CG10592), mRNA 40 7.2
16gb|AY084142.1| Drosophila melanogaster RE25175 full insert cDNA 40 7.2
17ref|NM_063797.1| Caenorhabditis elegans R05H5.7 (R05H5.7) mRNA, ... 40 7.2
18gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Can... 40 7.2
19emb|AJ575417.1|BAM575417 Bacillus amyloliquefaciens kdg gene for... 40 7.2
20gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, co... 40 7.2
21dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, co... 40 7.2
22gb|AC008994.3|AC008994 Homo sapiens chromosome 19 clone LLNLR-23... 40 7.2
23gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, co... 40 7.2
24gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20... 40 7.2

>dbj|AK103798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146A06, full
            insert sequence
          Length = 2136

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 102/120 (85%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418
            |||||||||||||| ||||| || ||  | || || |||||||||||||||||  |||| 
Sbjct: 1646 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 1588

                                                                        
Query: 419  ggactcgcaggcagcacacagcgcaaccgtccacgtatatcctgggaacaagctgtgagc 478
            |||||| ||||||||||| || |||| |||||||||||| ||||| ||||| ||||||||
Sbjct: 1587 ggactcacaggcagcacagagagcaatcgtccacgtataacctggaaacaaactgtgagc 1528



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>dbj|AK102317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090F18, full
            insert sequence
          Length = 1833

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 102/120 (85%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418
            |||||||||||||| ||||| || ||  | || || |||||||||||||||||  |||| 
Sbjct: 1646 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 1588

                                                                        
Query: 419  ggactcgcaggcagcacacagcgcaaccgtccacgtatatcctgggaacaagctgtgagc 478
            |||||| ||||||||||| || |||| |||||||||||| ||||| ||||| ||||||||
Sbjct: 1587 ggactcacaggcagcacagagagcaatcgtccacgtataacctggaaacaaactgtgagc 1528



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 84/99 (84%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                            
Query: 359      ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418
                |||||||||||||| ||||| || ||  | || || |||||||||||||||||  |||| 
Sbjct: 31076512 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 31076570

                                                       
Query: 419      ggactcgcaggcagcacacagcgcaaccgtccacgtata 457
                |||||| ||||||||||| || |||| ||||||||||||
Sbjct: 31076571 ggactcacaggcagcacagagagcaatcgtccacgtata 31076609



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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 84/99 (84%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                          
Query: 359    ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418
              |||||||||||||| ||||| || ||  | || || |||||||||||||||||  |||| 
Sbjct: 133491 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 133549

                                                     
Query: 419    ggactcgcaggcagcacacagcgcaaccgtccacgtata 457
              |||||| ||||||||||| || |||| ||||||||||||
Sbjct: 133550 ggactcacaggcagcacagagagcaatcgtccacgtata 133588



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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0014K08
          Length = 177263

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 84/99 (84%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                        
Query: 359  ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418
            |||||||||||||| ||||| || ||  | || || |||||||||||||||||  |||| 
Sbjct: 2857 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 2915

                                                   
Query: 419  ggactcgcaggcagcacacagcgcaaccgtccacgtata 457
            |||||| ||||||||||| || |||| ||||||||||||
Sbjct: 2916 ggactcacaggcagcacagagagcaatcgtccacgtata 2954



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 249     ggtctgctgaaggatgacgagaatcgcg 276
               |||| ||||||||||||| |||||||||
Sbjct: 1597644 ggtcagctgaaggatgaccagaatcgcg 1597671



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>emb|Z48795.1|CER05H5 Caenorhabditis elegans Cosmid R05H5, complete sequence
          Length = 24186

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 327  gtgtaccgtctgaggtttgggaaa 350
            ||||||||||||||||||| ||||
Sbjct: 8920 gtgtaccgtctgaggtttgcgaaa 8943



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>emb|AL591400.8| Human DNA sequence from clone RP11-65C6 on chromosome 6 Contains 40s
             ribosomal protein S3a (v-fos transformation effector
             protein 1) (RPS3A)(FTE1) pseudogene, complete sequence
          Length = 101739

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   accgtcaggccaaatccagc 169
             ||||||||||||||||||||
Sbjct: 97789 accgtcaggccaaatccagc 97770



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>emb|AL157934.17| Human DNA sequence from clone RP11-449M9 on chromosome Xq13.1-13.3
             Contains the 3' end of the SLC16A2 gene for solute carrier
             family 16 member 2 and two CpG islands, complete sequence
          Length = 106497

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   caggccaaatccagcatggt 174
             ||||||||||||||||||||
Sbjct: 72156 caggccaaatccagcatggt 72137



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>gb|AC166262.3| Mus musculus  BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 175073

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    acattcagcatggggactga 100
             ||||||||||||||||||||
Sbjct: 18104 acattcagcatggggactga 18123



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>emb|AJ576102.1|BAM576102 Bacillus amyloliquefaciens partial genome, strain FZB42
          Length = 122883

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     taaggcggctgaacaaaaaa 70
              ||||||||||||||||||||
Sbjct: 120273 taaggcggctgaacaaaaaa 120254



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>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169583

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   ctgggaacaagctgtgagca 479
             ||||||||||||||||||||
Sbjct: 23420 ctgggaacaagctgtgagca 23439



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>gb|AC023674.4| Drosophila melanogaster 3L BAC RP98-11E6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 182223

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   acgagaatcgcgccaagaac 284
             ||||||||||||||||||||
Sbjct: 93769 acgagaatcgcgccaagaac 93750



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>gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswell Park Cancer
           Institute Drosophila BAC Library) complete sequence
          Length = 163115

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 acgagaatcgcgccaagaac 284
           ||||||||||||||||||||
Sbjct: 917 acgagaatcgcgccaagaac 898



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>ref|NM_139719.2| Drosophila melanogaster CG10592-RA (CG10592), mRNA
          Length = 1749

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 acgagaatcgcgccaagaac 284
           ||||||||||||||||||||
Sbjct: 274 acgagaatcgcgccaagaac 293



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>gb|AY084142.1| Drosophila melanogaster RE25175 full insert cDNA
          Length = 1765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 acgagaatcgcgccaagaac 284
           ||||||||||||||||||||
Sbjct: 274 acgagaatcgcgccaagaac 293



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>ref|NM_063797.1| Caenorhabditis elegans R05H5.7 (R05H5.7) mRNA, complete cds
          Length = 612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 327 gtgtaccgtctgaggtttgggaaa 350
           ||||||||||||||||||| ||||
Sbjct: 133 gtgtaccgtctgaggtttgcgaaa 156



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>gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 174480

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    acattcagcatggggactga 100
             ||||||||||||||||||||
Sbjct: 53399 acattcagcatggggactga 53380



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>emb|AJ575417.1|BAM575417 Bacillus amyloliquefaciens kdg gene for KdgK protein
          Length = 122883

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     taaggcggctgaacaaaaaa 70
              ||||||||||||||||||||
Sbjct: 120273 taaggcggctgaacaaaaaa 120254



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>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence
          Length = 162265

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 363   agaaggatttcggaagaaggttcc 386
             |||||||||| |||||||||||||
Sbjct: 28769 agaaggatttgggaagaaggttcc 28792



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>dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome
          Length = 408101

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    aaggtctacaacgagcaggc 230
              ||||||||||||||||||||
Sbjct: 256602 aaggtctacaacgagcaggc 256583



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>gb|AC008994.3|AC008994 Homo sapiens chromosome 19 clone LLNLR-232F9, complete sequence
          Length = 45426

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tcaggccaaatccagcatgg 173
             ||||||||||||||||||||
Sbjct: 28318 tcaggccaaatccagcatgg 28337



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>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome
          Length = 161046

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gagcaggaaaccgtcgggcc 201
             ||||||||||||||||||||
Sbjct: 86538 gagcaggaaaccgtcgggcc 86519



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>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete
             sequence
          Length = 284268

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   acgagaatcgcgccaagaac 284
             ||||||||||||||||||||
Sbjct: 64904 acgagaatcgcgccaagaac 64885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,104,313
Number of Sequences: 3902068
Number of extensions: 3104313
Number of successful extensions: 52699
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52627
Number of HSP's gapped (non-prelim): 62
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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