Clone Name | rbasd17b18 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK103798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146A06, full insert sequence Length = 2136 Score = 87.7 bits (44), Expect = 3e-14 Identities = 102/120 (85%), Gaps = 1/120 (0%) Strand = Plus / Minus Query: 359 ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418 |||||||||||||| ||||| || || | || || ||||||||||||||||| |||| Sbjct: 1646 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 1588 Query: 419 ggactcgcaggcagcacacagcgcaaccgtccacgtatatcctgggaacaagctgtgagc 478 |||||| ||||||||||| || |||| |||||||||||| ||||| ||||| |||||||| Sbjct: 1587 ggactcacaggcagcacagagagcaatcgtccacgtataacctggaaacaaactgtgagc 1528
>dbj|AK102317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090F18, full insert sequence Length = 1833 Score = 87.7 bits (44), Expect = 3e-14 Identities = 102/120 (85%), Gaps = 1/120 (0%) Strand = Plus / Minus Query: 359 ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418 |||||||||||||| ||||| || || | || || ||||||||||||||||| |||| Sbjct: 1646 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 1588 Query: 419 ggactcgcaggcagcacacagcgcaaccgtccacgtatatcctgggaacaagctgtgagc 478 |||||| ||||||||||| || |||| |||||||||||| ||||| ||||| |||||||| Sbjct: 1587 ggactcacaggcagcacagagagcaatcgtccacgtataacctggaaacaaactgtgagc 1528
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 8e-09 Identities = 84/99 (84%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 359 ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418 |||||||||||||| ||||| || || | || || ||||||||||||||||| |||| Sbjct: 31076512 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 31076570 Query: 419 ggactcgcaggcagcacacagcgcaaccgtccacgtata 457 |||||| ||||||||||| || |||| |||||||||||| Sbjct: 31076571 ggactcacaggcagcacagagagcaatcgtccacgtata 31076609
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 69.9 bits (35), Expect = 8e-09 Identities = 84/99 (84%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 359 ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418 |||||||||||||| ||||| || || | || || ||||||||||||||||| |||| Sbjct: 133491 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 133549 Query: 419 ggactcgcaggcagcacacagcgcaaccgtccacgtata 457 |||||| ||||||||||| || |||| |||||||||||| Sbjct: 133550 ggactcacaggcagcacagagagcaatcgtccacgtata 133588
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 69.9 bits (35), Expect = 8e-09 Identities = 84/99 (84%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 359 ccccagaaggatttcggaagaaggttccttttgtcagccctgaacagccagcccgatgtg 418 |||||||||||||| ||||| || || | || || ||||||||||||||||| |||| Sbjct: 2857 ccccagaaggattttggaagcagatttgtcttctccgccctgaacagccagcct-atgtt 2915 Query: 419 ggactcgcaggcagcacacagcgcaaccgtccacgtata 457 |||||| ||||||||||| || |||| |||||||||||| Sbjct: 2916 ggactcacaggcagcacagagagcaatcgtccacgtata 2954
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggtctgctgaaggatgacgagaatcgcg 276 |||| ||||||||||||| ||||||||| Sbjct: 1597644 ggtcagctgaaggatgaccagaatcgcg 1597671
>emb|Z48795.1|CER05H5 Caenorhabditis elegans Cosmid R05H5, complete sequence Length = 24186 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 gtgtaccgtctgaggtttgggaaa 350 ||||||||||||||||||| |||| Sbjct: 8920 gtgtaccgtctgaggtttgcgaaa 8943
>emb|AL591400.8| Human DNA sequence from clone RP11-65C6 on chromosome 6 Contains 40s ribosomal protein S3a (v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 101739 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 accgtcaggccaaatccagc 169 |||||||||||||||||||| Sbjct: 97789 accgtcaggccaaatccagc 97770
>emb|AL157934.17| Human DNA sequence from clone RP11-449M9 on chromosome Xq13.1-13.3 Contains the 3' end of the SLC16A2 gene for solute carrier family 16 member 2 and two CpG islands, complete sequence Length = 106497 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 caggccaaatccagcatggt 174 |||||||||||||||||||| Sbjct: 72156 caggccaaatccagcatggt 72137
>gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175073 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 acattcagcatggggactga 100 |||||||||||||||||||| Sbjct: 18104 acattcagcatggggactga 18123
>emb|AJ576102.1|BAM576102 Bacillus amyloliquefaciens partial genome, strain FZB42 Length = 122883 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 taaggcggctgaacaaaaaa 70 |||||||||||||||||||| Sbjct: 120273 taaggcggctgaacaaaaaa 120254
>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169583 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 ctgggaacaagctgtgagca 479 |||||||||||||||||||| Sbjct: 23420 ctgggaacaagctgtgagca 23439
>gb|AC023674.4| Drosophila melanogaster 3L BAC RP98-11E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182223 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 acgagaatcgcgccaagaac 284 |||||||||||||||||||| Sbjct: 93769 acgagaatcgcgccaagaac 93750
>gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163115 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 acgagaatcgcgccaagaac 284 |||||||||||||||||||| Sbjct: 917 acgagaatcgcgccaagaac 898
>ref|NM_139719.2| Drosophila melanogaster CG10592-RA (CG10592), mRNA Length = 1749 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 acgagaatcgcgccaagaac 284 |||||||||||||||||||| Sbjct: 274 acgagaatcgcgccaagaac 293
>gb|AY084142.1| Drosophila melanogaster RE25175 full insert cDNA Length = 1765 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 acgagaatcgcgccaagaac 284 |||||||||||||||||||| Sbjct: 274 acgagaatcgcgccaagaac 293
>ref|NM_063797.1| Caenorhabditis elegans R05H5.7 (R05H5.7) mRNA, complete cds Length = 612 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 gtgtaccgtctgaggtttgggaaa 350 ||||||||||||||||||| |||| Sbjct: 133 gtgtaccgtctgaggtttgcgaaa 156
>gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174480 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 acattcagcatggggactga 100 |||||||||||||||||||| Sbjct: 53399 acattcagcatggggactga 53380
>emb|AJ575417.1|BAM575417 Bacillus amyloliquefaciens kdg gene for KdgK protein Length = 122883 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 taaggcggctgaacaaaaaa 70 |||||||||||||||||||| Sbjct: 120273 taaggcggctgaacaaaaaa 120254
>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence Length = 162265 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 agaaggatttcggaagaaggttcc 386 |||||||||| ||||||||||||| Sbjct: 28769 agaaggatttgggaagaaggttcc 28792
>dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome Length = 408101 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aaggtctacaacgagcaggc 230 |||||||||||||||||||| Sbjct: 256602 aaggtctacaacgagcaggc 256583
>gb|AC008994.3|AC008994 Homo sapiens chromosome 19 clone LLNLR-232F9, complete sequence Length = 45426 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcaggccaaatccagcatgg 173 |||||||||||||||||||| Sbjct: 28318 tcaggccaaatccagcatgg 28337
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gagcaggaaaccgtcgggcc 201 |||||||||||||||||||| Sbjct: 86538 gagcaggaaaccgtcgggcc 86519
>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete sequence Length = 284268 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 acgagaatcgcgccaagaac 284 |||||||||||||||||||| Sbjct: 64904 acgagaatcgcgccaagaac 64885 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,104,313 Number of Sequences: 3902068 Number of extensions: 3104313 Number of successful extensions: 52699 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52627 Number of HSP's gapped (non-prelim): 62 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)