Clone Name | rbasd16m17 |
---|---|
Clone Library Name | barley_pub |
>gb|AC087560.26| Mus musculus strain C57BL/6J clone rp23-448g13 map X, complete sequence Length = 203953 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 cacatgctttgctttggttggt 209 |||||||||||||||||||||| Sbjct: 33930 cacatgctttgctttggttggt 33951
>emb|AL954389.5| Mouse DNA sequence from clone RP23-321F18 on chromosome X, complete sequence Length = 25193 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 cacatgctttgctttggttggt 209 |||||||||||||||||||||| Sbjct: 8403 cacatgctttgctttggttggt 8424
>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence Length = 196114 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 atacataacattaataatata 123 ||||||||||||||||||||| Sbjct: 135698 atacataacattaataatata 135678
>gb|AC151830.3| Mus musculus BAC clone RP24-76I23 from chromosome 7, complete sequence Length = 212931 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 atacataacattaataatata 123 ||||||||||||||||||||| Sbjct: 89076 atacataacattaataatata 89056
>ref|NM_169611.1| Drosophila melanogaster CG6904-RC, transcript variant C (CG6904), mRNA Length = 2566 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 2429 tctgggcatacataatattaataat 2405
>ref|NM_169610.1| Drosophila melanogaster CG6904-RA, transcript variant A (CG6904), mRNA Length = 2688 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 2551 tctgggcatacataatattaataat 2527
>ref|NM_142165.2| Drosophila melanogaster CG6904-RB, transcript variant B (CG6904), mRNA Length = 3132 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 2995 tctgggcatacataatattaataat 2971
>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone BACR32A03, complete sequence Length = 182601 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 52000 tctgggcatacataatattaataat 52024
>gb|AY052005.1| Drosophila melanogaster LD46952 full length cDNA Length = 3149 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 2995 tctgggcatacataatattaataat 2971
>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone BACR25A06, complete sequence Length = 170163 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 167849 tctgggcatacataatattaataat 167873
>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the complete sequence Length = 228284 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 tctgggcatacataacattaataat 120 ||||||||||||||| ||||||||| Sbjct: 173690 tctgggcatacataatattaataat 173714
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 attctcttctgggcatacataacattaa 116 |||||||| |||||||||||||| |||| Sbjct: 985541 attctcttttgggcatacataactttaa 985514
>emb|BX511209.11| Zebrafish DNA sequence from clone CH211-129A6 in linkage group 5, complete sequence Length = 159017 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 catacataacattaataata 121 |||||||||||||||||||| Sbjct: 127035 catacataacattaataata 127054
>emb|AJ292057.1|ECO292057 Populus deltoides 5S rRNA gene, clone Pd-G48-20(R) Length = 428 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tttgctttggttggtattta 214 |||||||||||||||||||| Sbjct: 263 tttgctttggttggtattta 244
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 attctcttctgggcatacataacattaa 116 |||||||| |||||||||||||| |||| Sbjct: 1046295 attctcttttgggcatacataactttaa 1046268
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5, complete sequence Length = 178961 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 catacataacattaataata 121 |||||||||||||||||||| Sbjct: 139037 catacataacattaataata 139018
>ref|XM_317654.2| Anopheles gambiae str. PEST ENSANGP00000018575 (ENSANGG00000016086), partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 acaatgatgcagttgatcgg 27 |||||||||||||||||||| Sbjct: 224 acaatgatgcagttgatcgg 243
>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence Length = 143839 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 ataacattaataatatacacattt 130 |||| ||||||||||||||||||| Sbjct: 52893 ataatattaataatatacacattt 52870
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agcagcgacggcggcatcgc 152 |||||||||||||||||||| Sbjct: 1965994 agcagcgacggcggcatcgc 1966013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,194,473 Number of Sequences: 3902068 Number of extensions: 2194473 Number of successful extensions: 47017 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46968 Number of HSP's gapped (non-prelim): 49 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)