ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16m12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YICL_ECOLI (P31437) Inner membrane transport protein yicL 32 1.8

>YICL_ECOLI (P31437) Inner membrane transport protein yicL|
          Length = 307

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -3

Query: 317 GNGCFSLMNNHSDAVRT*CFTLLLFSHICTILMEILFLL 201
           G+  FS++NNH DA+     +LL+FS +  + +++ FLL
Sbjct: 59  GDKIFSIINNHKDAI-----SLLIFSVVGALTVQLTFLL 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,297,079
Number of Sequences: 219361
Number of extensions: 2097744
Number of successful extensions: 4740
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4737
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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