ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16m11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466219.1| Oryza sativa (japonica cultivar-group), mRNA 168 3e-39
2dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 3e-39
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 4e-23
4dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 115 4e-23
5gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence 84 2e-13
6gb|AY109813.1| Zea mays CL4777_1 mRNA sequence 84 2e-13
7dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 44 0.13
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
9dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
10dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
11gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosom... 40 2.1
12gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, co... 40 2.1
13gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 40 2.1
14gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome... 40 2.1
15ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819 ... 40 2.1
16gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, comple... 40 2.1
17gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, com... 38 8.2
18ref|XM_617598.2| PREDICTED: Bos taurus similar to CG8991-PA (LOC... 38 8.2
19ref|XM_865684.1| PREDICTED: Bos taurus hypothetical protein LOC6... 38 8.2
20ref|XM_869664.1| PREDICTED: Bos taurus similar to G protein-coup... 38 8.2
21gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome... 38 8.2
22ref|NM_001040252.1| Danio rerio zgc:136241 (zgc:136241), mRNA 38 8.2
23gb|AC004525.1|HUAC004525 Homo sapiens Chromosome 16 BAC clone CI... 38 8.2
24gb|BC115046.1| Danio rerio cDNA clone MGC:136241 IMAGE:7922244, ... 38 8.2
25gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 38 8.2
26ref|NM_001030151.1| Danio rerio novel protein similar to vertebr... 38 8.2
27gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Ca... 38 8.2
28gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, com... 38 8.2
29gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 38 8.2
30dbj|AK125937.1| Homo sapiens cDNA FLJ43949 fis, clone TESTI4015263 38 8.2
31gb|DQ384210.1| Abies alba chalcone synthase (CHS) gene, CHS-A31 ... 38 8.2
32gb|DQ384205.1| Abies alba chalcone synthase (CHS) gene, CHS-A31 ... 38 8.2
33gb|DQ384197.1| Abies alba chalcone synthase (CHS) gene, CHS-A30 ... 38 8.2
34gb|DQ384192.1| Abies alba chalcone synthase (CHS) gene, CHS-A16 ... 38 8.2
35gb|DQ384190.1| Abies alba chalcone synthase (CHS) gene, CHS-A14 ... 38 8.2
36gb|DQ371834.1| Abies alba genotype Giau Merlot 1 chalcone syntha... 38 8.2
37gb|DQ371833.1| Abies alba genotype Giau Merlot 1 chalcone syntha... 38 8.2
38gb|DQ371831.1| Abies alba genotype Giau Merlot 1 chalcone syntha... 38 8.2
39gb|DQ371828.1| Abies alba genotype Lamacce 3 chalcone synthase (... 38 8.2
40gb|DQ371827.1| Abies alba genotype Lamacce 3 chalcone synthase (... 38 8.2
41gb|DQ371826.1| Abies alba genotype Lamacce 3 chalcone synthase (... 38 8.2
42gb|DQ371825.1| Abies alba genotype Lamacce 3 chalcone synthase (... 38 8.2
43gb|DQ371820.1| Abies alba genotype Lamacce 2 chalcone synthase (... 38 8.2
44gb|DQ371816.1| Abies alba genotype Lamacce 1 chalcone synthase (... 38 8.2
45gb|DQ371812.1| Abies alba genotype Lamacce 1 chalcone synthase (... 38 8.2
46gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete se... 38 8.2
47gb|AC118275.4| Homo sapiens BAC clone RP11-38M16 from 4, complet... 38 8.2
48gb|AF290893.1|AF290893 Lycopersicon esculentum endo-beta-mannana... 38 8.2
49gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, com... 38 8.2
50emb|BX571719.3| Zebrafish DNA sequence from clone DKEY-183C2 in ... 38 8.2
51gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 38 8.2
52emb|CT486006.6| Mouse DNA sequence from clone RP23-433C10 on chr... 38 8.2
53emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, c... 38 8.2
54gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 38 8.2
55emb|AL627425.15| Mouse DNA sequence from clone RP23-283L16 on ch... 38 8.2
56dbj|AP000545.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 38 8.2
57emb|AL355839.4|CNS05TCU Human chromosome 14 DNA sequence BAC R-2... 38 8.2 
>ref|XM_466219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  168 bits (85), Expect = 3e-39
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                       
Query: 19  gccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagcttc 78
           |||| ||||||||||||||||||||||||||||||||||||||| ||   ||||||||| 
Sbjct: 886 gccaacctctctgcttctagccttgcattctgttcttccatgagttgctgttgcagcttg 827

                                                                       
Query: 79  tccaccgtgatattcagcttttcctccaccatggcagtaatgttngcaagctgttcatcc 138
           || || |||||||||||||||||||||||||||   |||||||| |||||||||||||||
Sbjct: 826 tcaacagtgatattcagcttttcctccaccatgttggtaatgtttgcaagctgttcatcc 767

                           
Query: 139 cgagttctgtggatct 154
           |||||||| |||||||
Sbjct: 766 cgagttctctggatct 751
to top
>dbj|AK068385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D08, full
            insert sequence
          Length = 1307

 Score =  168 bits (85), Expect = 3e-39
 Identities = 123/136 (90%)
 Strand = Plus / Minus

                                                                        
Query: 19   gccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagcttc 78
            |||| ||||||||||||||||||||||||||||||||||||||| ||   ||||||||| 
Sbjct: 1006 gccaacctctctgcttctagccttgcattctgttcttccatgagttgctgttgcagcttg 947

                                                                        
Query: 79   tccaccgtgatattcagcttttcctccaccatggcagtaatgttngcaagctgttcatcc 138
            || || |||||||||||||||||||||||||||   |||||||| |||||||||||||||
Sbjct: 946  tcaacagtgatattcagcttttcctccaccatgttggtaatgtttgcaagctgttcatcc 887

                            
Query: 139  cgagttctgtggatct 154
            |||||||| |||||||
Sbjct: 886  cgagttctctggatct 871
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 4e-23
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                            
Query: 19       gccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagcttc 78
                |||| ||||||||||||||||||||||||||||||||||||||| ||   ||||||||| 
Sbjct: 21107349 gccaacctctctgcttctagccttgcattctgttcttccatgagttgctgttgcagcttg 21107290

                                              
Query: 79       tccaccgtgatattcagcttttcctccacc 108
                || || ||||||||||||||||||||||||
Sbjct: 21107289 tcaacagtgatattcagcttttcctccacc 21107260



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 115      gtaatgttngcaagctgttcatcccgagttctgtggatct 154
                |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 21106196 gtaatgtttgcaagctgttcatcccgagttctctggatct 21106157
to top
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score =  115 bits (58), Expect = 4e-23
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                         
Query: 19    gccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagcttc 78
             |||| ||||||||||||||||||||||||||||||||||||||| ||   ||||||||| 
Sbjct: 14065 gccaacctctctgcttctagccttgcattctgttcttccatgagttgctgttgcagcttg 14006

                                           
Query: 79    tccaccgtgatattcagcttttcctccacc 108
             || || ||||||||||||||||||||||||
Sbjct: 14005 tcaacagtgatattcagcttttcctccacc 13976



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 115   gtaatgttngcaagctgttcatcccgagttctgtggatct 154
             |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 12912 gtaatgtttgcaagctgttcatcccgagttctctggatct 12873
to top
>gb|BT017369.1| Zea mays clone EL01N0324H03.c mRNA sequence
          Length = 1374

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 107/129 (82%)
 Strand = Plus / Plus

                                                                       
Query: 18  cgccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagctt 77
           ||||||| |||| ||||| |||||||| ||||||||||||||||||||   ||||| |||
Sbjct: 475 cgccaccttctcagcttccagccttgcgttctgttcttccatgagctgctgttgcaactt 534

                                                                       
Query: 78  ctccaccgtgatattcagcttttcctccaccatggcagtaatgttngcaagctgttcatc 137
           |||||| |||   || | ||||||||| ||||||   || ||||  ||||||||||||||
Sbjct: 535 ctccacagtgcagtttaacttttcctcgaccatgttggttatgtgcgcaagctgttcatc 594

                    
Query: 138 ccgagttct 146
           || ||||||
Sbjct: 595 cctagttct 603
to top
>gb|AY109813.1| Zea mays CL4777_1 mRNA sequence
          Length = 1239

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 107/129 (82%)
 Strand = Plus / Minus

                                                                       
Query: 18  cgccaccctctctgcttctagccttgcattctgttcttccatgagctgaacttgcagctt 77
           ||||||| |||| ||||| |||||||| ||||||||||||||||||||   ||||| |||
Sbjct: 972 cgccaccttctcagcttccagccttgcgttctgttcttccatgagctgctgttgcaactt 913

                                                                       
Query: 78  ctccaccgtgatattcagcttttcctccaccatggcagtaatgttngcaagctgttcatc 137
           |||||| |||   || | ||||||||| ||||||   || ||||  ||||||||||||||
Sbjct: 912 ctccacagtgcagtttaacttttcctcgaccatgttggttatgtgcgcaagctgttcatc 853

                    
Query: 138 ccgagttct 146
           || ||||||
Sbjct: 852 cctagttct 844
to top
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 71      gcagcttctccaccgtgatatt 92
               ||||||||||||||||||||||
Sbjct: 4993467 gcagcttctccaccgtgatatt 4993488
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 46      ttctgttcttccatgagctga 66
               |||||||||||||||||||||
Sbjct: 6835781 ttctgttcttccatgagctga 6835801



 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      ttctgttcttccatgagctga 66
               |||||||||||||||||||||
Sbjct: 6621452 ttctgttcttccatgagctga 6621432
to top
>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0002E10
          Length = 140486

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    ttctgttcttccatgagctga 66
             |||||||||||||||||||||
Sbjct: 86500 ttctgttcttccatgagctga 86520
to top
>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0003D23
          Length = 151604

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    ttctgttcttccatgagctga 66
             |||||||||||||||||||||
Sbjct: 54799 ttctgttcttccatgagctga 54779
to top
>gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosome 8, complete sequence
          Length = 214894

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tgcttctagccttgcattct 49
             ||||||||||||||||||||
Sbjct: 54850 tgcttctagccttgcattct 54869
to top
>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence
          Length = 145019

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    tcagcttttcctccaccatg 111
             ||||||||||||||||||||
Sbjct: 96007 tcagcttttcctccaccatg 95988
to top
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 179854

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     attcagcttttcctccacca 109
              ||||||||||||||||||||
Sbjct: 106937 attcagcttttcctccacca 106918
to top
>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence
          Length = 253762

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     caccgtgatattcagcttttcctc 104
              |||||| |||||||||||||||||
Sbjct: 125424 caccgtaatattcagcttttcctc 125447
to top
>ref|XM_321730.2| Anopheles gambiae str. PEST ENSANGP00000016819
           (ENSANGG00000014330), partial mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 90  attcagcttttcctccaccatggcagta 117
           ||||||||||||||||||| ||||||||
Sbjct: 102 attcagcttttcctccacc-tggcagta 76
to top
>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence
          Length = 201556

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tgcttctagccttgcattct 49
             ||||||||||||||||||||
Sbjct: 21059 tgcttctagccttgcattct 21040
to top
>gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, complete sequence
          Length = 174626

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     ccctctctgcttctagcct 41
              |||||||||||||||||||
Sbjct: 116132 ccctctctgcttctagcct 116114
to top
>ref|XM_617598.2| PREDICTED: Bos taurus similar to CG8991-PA (LOC537433), mRNA
          Length = 3619

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 14   ctgccgccaccctctctgcttct 36
            ||||||||||| |||||||||||
Sbjct: 2504 ctgccgccaccatctctgcttct 2526
to top
>ref|XM_865684.1| PREDICTED: Bos taurus hypothetical protein LOC614257 (LOC614257),
           mRNA
          Length = 516

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  ctgccgccaccctctctgc 32
           |||||||||||||||||||
Sbjct: 472 ctgccgccaccctctctgc 454
to top
>ref|XM_869664.1| PREDICTED: Bos taurus similar to G protein-coupled receptor 26
          (LOC617411), mRNA
          Length = 477

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 20 ccaccctctctgcttctagcctt 42
          ||||| |||||||||||||||||
Sbjct: 34 ccaccttctctgcttctagcctt 12
to top
>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence
          Length = 190088

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 46     ttctgttcttccatgagctgaac 68
              |||||||||||||| ||||||||
Sbjct: 175995 ttctgttcttccataagctgaac 176017
to top
>ref|NM_001040252.1| Danio rerio zgc:136241 (zgc:136241), mRNA
          Length = 1575

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   cagcttttcctccaccatg 111
            |||||||||||||||||||
Sbjct: 1171 cagcttttcctccaccatg 1153
to top
>gb|AC004525.1|HUAC004525 Homo sapiens Chromosome 16 BAC clone CIT987SK-582J2, complete sequence
          Length = 130020

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    ctctctgcttctagccttg 43
             |||||||||||||||||||
Sbjct: 35602 ctctctgcttctagccttg 35584
to top
>gb|BC115046.1| Danio rerio cDNA clone MGC:136241 IMAGE:7922244, complete cds
          Length = 1575

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   cagcttttcctccaccatg 111
            |||||||||||||||||||
Sbjct: 1171 cagcttttcctccaccatg 1153
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 6       cctggcctctgccgccaccctct 28
               |||||||||||||||||| ||||
Sbjct: 1275217 cctggcctctgccgccacactct 1275239
to top
>ref|NM_001030151.1| Danio rerio novel protein similar to vertebrate cytidine
            monophosphate N-acetylneuraminic acid (CMAS) (LOC561018),
            mRNA
          Length = 1546

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   cagcttttcctccaccatg 111
            |||||||||||||||||||
Sbjct: 1156 cagcttttcctccaccatg 1138
to top
>gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 153284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     ccaccctctctgcttctagcctt 42
              ||||||||||||||| |||||||
Sbjct: 109662 ccaccctctctgcttttagcctt 109640
to top
>gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, complete sequence
          Length = 163410

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      cctggcctctgccgccacc 24
              |||||||||||||||||||
Sbjct: 121138 cctggcctctgccgccacc 121156
to top
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 5      ccctggcctctgccgccaccctc 27
              |||||| ||||||||||||||||
Sbjct: 141050 ccctgggctctgccgccaccctc 141028
to top
>dbj|AK125937.1| Homo sapiens cDNA FLJ43949 fis, clone TESTI4015263
          Length = 3696

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 20   ccaccctctctgcttctagcctt 42
            ||||||||||||||| |||||||
Sbjct: 1592 ccaccctctctgcttttagcctt 1570
to top
>gb|DQ384210.1| Abies alba chalcone synthase (CHS) gene, CHS-A31 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ384205.1| Abies alba chalcone synthase (CHS) gene, CHS-A31 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ384197.1| Abies alba chalcone synthase (CHS) gene, CHS-A30 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ384192.1| Abies alba chalcone synthase (CHS) gene, CHS-A16 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ384190.1| Abies alba chalcone synthase (CHS) gene, CHS-A14 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371834.1| Abies alba genotype Giau Merlot 1 chalcone synthase (CHS) gene,
            CHS-A23 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371833.1| Abies alba genotype Giau Merlot 1 chalcone synthase (CHS) gene,
            CHS-A22 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371831.1| Abies alba genotype Giau Merlot 1 chalcone synthase (CHS) gene,
            CHS-A14 allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371828.1| Abies alba genotype Lamacce 3 chalcone synthase (CHS) gene, CHS-A16
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371827.1| Abies alba genotype Lamacce 3 chalcone synthase (CHS) gene, CHS-A15
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371826.1| Abies alba genotype Lamacce 3 chalcone synthase (CHS) gene, CHS-A14
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371825.1| Abies alba genotype Lamacce 3 chalcone synthase (CHS) gene, CHS-A13
            allele, complete cds
          Length = 1299

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1080 attcagcttttcctccacc 1062
to top
>gb|DQ371820.1| Abies alba genotype Lamacce 2 chalcone synthase (CHS) gene, CHS-A9
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371816.1| Abies alba genotype Lamacce 1 chalcone synthase (CHS) gene, CHS-A7
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|DQ371812.1| Abies alba genotype Lamacce 1 chalcone synthase (CHS) gene, CHS-A3
            allele, complete cds
          Length = 1284

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   attcagcttttcctccacc 108
            |||||||||||||||||||
Sbjct: 1065 attcagcttttcctccacc 1047
to top
>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence
          Length = 157051

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     ccctggcctctgccgccaccctc 27
             |||||| ||||||||||||||||
Sbjct: 18485 ccctgggctctgccgccaccctc 18463
to top
>gb|AC118275.4| Homo sapiens BAC clone RP11-38M16 from 4, complete sequence
          Length = 75733

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 41   ttgcattctgttcttccat 59
            |||||||||||||||||||
Sbjct: 8711 ttgcattctgttcttccat 8729
to top
>gb|AF290893.1|AF290893 Lycopersicon esculentum endo-beta-mannanase (LeMan3) gene, complete
            cds
          Length = 3098

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 88   atattcagcttttcctcca 106
            |||||||||||||||||||
Sbjct: 1694 atattcagcttttcctcca 1676
to top
>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence
          Length = 159831

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     ctgaacttgcagcttctcc 81
              |||||||||||||||||||
Sbjct: 111525 ctgaacttgcagcttctcc 111543
to top
>emb|BX571719.3| Zebrafish DNA sequence from clone DKEY-183C2 in linkage group 4,
             complete sequence
          Length = 111614

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    cagcttttcctccaccatg 111
             |||||||||||||||||||
Sbjct: 18576 cagcttttcctccaccatg 18594
to top
>gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OABb-168A1, complete
             sequence
          Length = 139370

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    ccgccaccctctctgcttc 35
             |||||||||||||||||||
Sbjct: 40212 ccgccaccctctctgcttc 40230
to top
>emb|CT486006.6| Mouse DNA sequence from clone RP23-433C10 on chromosome 9, complete
              sequence
          Length = 208668

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     cattctgttcttccatgag 62
              |||||||||||||||||||
Sbjct: 115385 cattctgttcttccatgag 115367
to top
>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence
          Length = 176982

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     gaacttgcagcttctccac 83
              |||||||||||||||||||
Sbjct: 151851 gaacttgcagcttctccac 151869
to top
>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     ttcttccatgagctgaact 69
              |||||||||||||||||||
Sbjct: 681864 ttcttccatgagctgaact 681882
to top
>emb|AL627425.15| Mouse DNA sequence from clone RP23-283L16 on chromosome 4, complete
             sequence
          Length = 226967

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    agcttttcctccaccatgg 112
             |||||||||||||||||||
Sbjct: 98460 agcttttcctccaccatgg 98478
to top
>dbj|AP000545.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c68B10
          Length = 37247

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ctgaacttgcagcttctcc 81
             |||||||||||||||||||
Sbjct: 21316 ctgaacttgcagcttctcc 21334
to top
>emb|AL355839.4|CNS05TCU Human chromosome 14 DNA sequence BAC R-243J8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 159792

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    gctgaacttgcagcttctc 80
             |||||||||||||||||||
Sbjct: 36298 gctgaacttgcagcttctc 36316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,598,398
Number of Sequences: 3902068
Number of extensions: 1598398
Number of successful extensions: 138464
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138237
Number of HSP's gapped (non-prelim): 225
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top