ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC) 30 4.6
2PURA_STAES (Q8CQK1) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 6.0
3PURA_STAEQ (Q5HK16) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 6.0
4YQG4_CAEEL (Q09499) Putative serine/threonine-protein kinase C41... 30 7.8
5Y2673_VIBPA (Q87LD9) UPF0042 protein VP2673 30 7.8
6EPB1A_XENLA (Q91571) Ephrin type-B receptor 1-A precursor (EC 2.... 30 7.8

>DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4196

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 551 VIDLMSCFPCLEKLYIQIRSLRGKNLWRRKHQSHIRCLDIRLKKVV-----LASYGGTKS 387
           V ++++ F  L+ L +   SL+G N W     S+  C+ +   +V+     L  Y  T S
Sbjct: 510 VFNILTVFKDLQSLNVLDISLKGVNAWNSLETSYYNCMTVLEDEVIAQLKSLLQYSKTSS 569

Query: 386 QI 381
           Q+
Sbjct: 570 QM 571



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>PURA_STAES (Q8CQK1) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 427

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 508 YNFSKQGKQLMRSITISTDRGRTEIDKVLTVCTTIGNRVGN 630
           Y F      +  ++T+ T  G T + KV+ VC +  +RVG+
Sbjct: 234 YPFVTSSNPVAGNVTVGTGVGPTSVSKVIGVCKSYTSRVGD 274



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>PURA_STAEQ (Q5HK16) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 427

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 508 YNFSKQGKQLMRSITISTDRGRTEIDKVLTVCTTIGNRVGN 630
           Y F      +  ++T+ T  G T + KV+ VC +  +RVG+
Sbjct: 234 YPFVTSSNPVAGNVTVGTGVGPTSVSKVIGVCKSYTSRVGD 274



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>YQG4_CAEEL (Q09499) Putative serine/threonine-protein kinase C41C4.4 precursor|
            (EC 2.7.11.1)
          Length = 983

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 54   KTSETREPIKLDRKNVTSKDNPS 122
            K  E R P+KLD++N+  K NP+
Sbjct: 959  KPVEQRTPLKLDKRNIKKKSNPN 981



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>Y2673_VIBPA (Q87LD9) UPF0042 protein VP2673|
          Length = 287

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 474 QILSPQRTYLDIQLLQAGKATHEINNHIHRQRTNRDR*SLDSVY 605
           +IL+P + + D+ L  +G++ HE++  +  +   RDR  L  V+
Sbjct: 123 EILTPLKAHADLILNSSGQSLHELSETVRMRVEGRDRKGLVMVF 166



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>EPB1A_XENLA (Q91571) Ephrin type-B receptor 1-A precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor XEK)
          Length = 985

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 435 VKASDVTLVFTTPQILSPQRTYLDIQLLQAGKATHEINNHIHRQRTNRDR 584
           VKA+  ++  + PQ   P    LD ++    K  HE N+ + R +TN  R
Sbjct: 445 VKATMKSITLSWPQQEQPNGIILDYEIRYYEKDHHEFNSSLARSQTNTAR 494


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,118,670
Number of Sequences: 219361
Number of extensions: 1828696
Number of successful extensions: 5172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5172
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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