>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = +3

Query: 276  LPPPAVLSAPHHLLPFQKG*AVPKRLGSSFGFP-----PAAFVQRTSAGVVSGLDDTMAE 440
            LPPP  L   HH LPF  G   P  L  S   P     PA     +S  +  GL    A+
Sbjct: 1109 LPPPPNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQ 1168

Query: 441  SAA 449
            S A
Sbjct: 1169 SPA 1171

>TOF1_YEAST (P53840) Topoisomerase 1-associated factor 1|
          Length = 1238

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 345 LVQPSLFGMEEDDVVRRGPLEVVNTNQSKACVGSLVKLLPDDDAMPPS 202
           L+ P L   E     R G   V+N     A   S  K +PD++A+PPS
Sbjct: 763 LLFPPLHNSEVGFYQRYGEYNVLNNESMYAAPASQFKPIPDEEALPPS 810

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +3

Query: 276  LPPPAVLSAPHHLLPFQKG*AVPKRLGSSFGFP-----PAAFVQRTSAGVVSGLDDTMAE 440
            LP P  L   HH LPF  G   P  L  S   P     PA     +S  +  GL    A+
Sbjct: 1110 LPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQ 1169

Query: 441  SAA 449
            S A
Sbjct: 1170 SPA 1172

>RPOA_PHAAN (Q8MC99) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 333

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +2

Query: 350 VGKQLRFPTRRICSKNVGRRRLGIR*YHGRICSMALGPGQKEFMKPLCFHGISWLDKISL 529
           V ++LRF TR +  K V  R    R Y+GR     L  GQ + +      GI+ + +I L
Sbjct: 2   VQEKLRFSTRTLQWKCVESRIESKRLYYGRFILSPLMKGQADTI------GIA-IRRILL 54

Query: 530 ARCRG-CCTR*DSPPVPH 580
               G C TR  S  +PH
Sbjct: 55  GEIEGTCITRVKSEKIPH 72

>MFD_MYCTU (P64326) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)|
           (ATP-dependent helicase mfd)
          Length = 1234

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
 Frame = -2

Query: 402 PTFFEQMRRVGNRSCFPTFLVQPSLFGMEEDDVVRRGPLEVVNTN---------QSKACV 250
           PTF + M+R G R    T +   S   +    + R+GPL VV            + +   
Sbjct: 24  PTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVF 83

Query: 249 GSLVKLLPDDDAMP 208
           G  V LLP  + +P
Sbjct: 84  GDAVALLPSWETLP 97

>MFD_MYCBO (P64327) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)|
           (ATP-dependent helicase mfd)
          Length = 1234

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
 Frame = -2

Query: 402 PTFFEQMRRVGNRSCFPTFLVQPSLFGMEEDDVVRRGPLEVVNTN---------QSKACV 250
           PTF + M+R G R    T +   S   +    + R+GPL VV            + +   
Sbjct: 24  PTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVF 83

Query: 249 GSLVKLLPDDDAMP 208
           G  V LLP  + +P
Sbjct: 84  GDAVALLPSWETLP 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,190,362
Number of Sequences: 219361
Number of extensions: 1758672
Number of successful extensions: 4024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4024
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)