ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRDC_VIBCH (Q9KNS3) Fumarate reductase subunit C 32 1.5
2SYFB_PROM9 (Q31AV5) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 5.7
3FRDC_VIBVY (Q7MGX5) Fumarate reductase subunit C 30 7.4
4FRDC_VIBVU (Q8DCX3) Fumarate reductase subunit C 30 7.4
5CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 p... 30 9.7

>FRDC_VIBCH (Q9KNS3) Fumarate reductase subunit C|
          Length = 127

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -2

Query: 674 RTAYLRRHXEAFWVDFGDFRFLHIKTKSCTLTYLGLQQLSLALENLVQLSSRKQKWIPYL 495
           R  Y+R     +W D   +RF  ++  +     L    L++ L +LV+     Q W+ ++
Sbjct: 4   RKPYVREMKRTWWKDHPFYRFYMVREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLDFM 63

Query: 494 SSPLLL 477
           ++PL++
Sbjct: 64  ANPLVI 69



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>SYFB_PROM9 (Q31AV5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 814

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 632 DFGDFRFLH----IKTKSCTLTYLGLQQLSLALENLVQLSSRKQKWIP 501
           D G F  +H    ++ KS  + YL     S+ ++NL+  S+RK KWIP
Sbjct: 671 DAGYFGEIHPKLILEKKSLKIVYL----FSINVDNLLGASTRKNKWIP 714



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>FRDC_VIBVY (Q7MGX5) Fumarate reductase subunit C|
          Length = 127

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -2

Query: 674 RTAYLRRHXEAFWVDFGDFRFLHIKTKSCTLTYLGLQQLSLALENLVQLSSRKQKWIPYL 495
           R  Y+R     +W D   +RF  ++  +     L    L++ L +LV+     Q W+ ++
Sbjct: 4   RKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLNFM 63

Query: 494 SSPLLL 477
           ++P+++
Sbjct: 64  ANPVVI 69



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>FRDC_VIBVU (Q8DCX3) Fumarate reductase subunit C|
          Length = 127

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -2

Query: 674 RTAYLRRHXEAFWVDFGDFRFLHIKTKSCTLTYLGLQQLSLALENLVQLSSRKQKWIPYL 495
           R  Y+R     +W D   +RF  ++  +     L    L++ L +LV+     Q W+ ++
Sbjct: 4   RKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLNFM 63

Query: 494 SSPLLL 477
           ++P+++
Sbjct: 64  ANPVVI 69



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>CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 precursor|
          Length = 389

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 7   NSSVQIYKSLCISLSLTGSNAHKFAVTMEP 96
           NSSVQ   SL I++S T +N    +VT+EP
Sbjct: 107 NSSVQSQTSLAITVSFTPTNFSTSSVTLEP 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,333,413
Number of Sequences: 219361
Number of extensions: 1944225
Number of successful extensions: 5108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5107
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7309604013
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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