ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16m04 |
|---|---|
| Clone Library Name | barley_pub |
>THEX1_HUMAN (Q8IV48) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) (Histone mRNA 3' end-specific exoribonuclease) (Protein 3'hExo) (HEXO) Length = 348 Score = 62.0 bits (149), Expect = 1e-09 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%) Frame = -2 Query: 649 GDWDCRTMLEFECRFKGIEKPSYFDQWINLRVPFQAAFG-GGGRVNLQEAVRAAGLDWEG 473 G WD L +C+ ++ P + +WIN+R + + + L + G+D++G Sbjct: 230 GSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDG 289 Query: 472 RLHCGLDDALNTARLLVAIMRRGVKITITGS------LAPPLSAPILQQPQPHMSSY 320 R HCGLDD+ N AR+ V +++ G ++ I ++ S PI P P M + Sbjct: 290 RPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHF 346
>THEX1_RAT (Q5FVR4) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) Length = 345 Score = 60.1 bits (144), Expect = 6e-09 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Frame = -2 Query: 649 GDWDCRTMLEFECRFKGIEKPSYFDQWINLRVPFQAAFG-GGGRVNLQEAVRAAGLDWEG 473 G WD L +C+ ++ PS+ +WIN+R + + + L + G+D++G Sbjct: 227 GSWDMSKFLNIQCQLSRLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDG 286 Query: 472 RLHCGLDDALNTARLLVAIMRRGVKITITGSL------APPLSAPILQQPQPHM 329 R H GLDD+ N AR+ V +++ G ++ I L + S P+ P P M Sbjct: 287 RPHSGLDDSKNIARIAVRMLQDGCELRINEKLHGGQLMSVSSSLPVEGAPAPQM 340
>THEX1_MOUSE (Q7TMF2) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) Length = 345 Score = 60.1 bits (144), Expect = 6e-09 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Frame = -2 Query: 649 GDWDCRTMLEFECRFKGIEKPSYFDQWINLRVPFQAAFG-GGGRVNLQEAVRAAGLDWEG 473 G WD L +CR ++ P++ +WIN+R + + + L + G+D++G Sbjct: 227 GSWDMSKFLSIQCRLSRLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDG 286 Query: 472 RLHCGLDDALNTARLLVAIMRRGVKITITGS------LAPPLSAPILQQPQPHM 329 R H GLDD+ N AR+ V +++ G ++ I ++ S P+ P P M Sbjct: 287 RPHSGLDDSKNIARIAVRMLQDGCELRINEKILGGQLMSVSSSLPVEGAPAPQM 340
>ERI1_CAEEL (O44406) 3'-5' exonuclease eri-1 (EC 3.1.-.-) (Enhanced RNAi| protein) Length = 582 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Frame = -2 Query: 649 GDWDCRTMLEFECRFKGIEKPSYFDQWINLRVPFQAAFGG----GGRVNLQEAVRAAGLD 482 G D ++F+C I P F +IN++ F+ F G G+ ++ + L Sbjct: 252 GPHDMWKFMQFQCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLS 311 Query: 481 WEGRLHCGLDDALNTARLLVAIMRRGVKITI 389 + G H GLDDA N A + + +M+ +++ I Sbjct: 312 FVGNKHSGLDDATNIAAIAIQMMKLKIELRI 342
>CRN4_CAEEL (Q10905) Cell death-related nuclease 4 precursor (EC 3.1.-.-)| Length = 298 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%) Frame = -2 Query: 640 DCRTMLEFECRFKGIEKPSYFDQWINLRVPFQAAFGGGGRVNLQEAVRAA------GLDW 479 D + +++ + I+ P++F Q+INL F G L L Sbjct: 115 DLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPT 174 Query: 478 EGRLHCGLDDALNTARLLVAIMRRGVKITI 389 GR H +DD LN A +L ++ G K+T+ Sbjct: 175 IGRAHDAMDDCLNIATILQRMINMGAKVTV 204
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 35.4 bits (80), Expect = 0.15 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%) Frame = +2 Query: 119 ARLTLAPELQYVLNLSLLPWILGSVAPSELGSHGRPPVSAS*EALPLHHASSVRQPAVAQ 298 ++++L P ++ + S P I P H PP A+P H+A + R P+ + Sbjct: 1349 SKMSLEPPVRPAVPTSPKPQI-----PDSSNVHAPPPPVQPMNAMPSHNAVNAR-PSAPE 1402 Query: 299 ARPRVATIATHVRLWLLQDXXXXXXXXXAGNGNLDAAPHDRDKQTRCVERVIQPA-VQAA 475 R ++++ + ++D + N AP + Q V+ PA + A Sbjct: 1403 RRDSFGSVSSGSNVSSIEDETSTMPLKASQPTN-PGAPSNHAPQ------VVPPAPMHAV 1455 Query: 476 LPVQPRRPDRLLQVHPPSAA 535 PVQP+ P + PS+A Sbjct: 1456 APVQPKAPGMVTNAPAPSSA 1475
>ACHE_BOVIN (P02715) Acetylcholine receptor protein, epsilon subunit precursor| Length = 491 Score = 34.3 bits (77), Expect = 0.33 Identities = 19/37 (51%), Positives = 24/37 (64%) Frame = +2 Query: 131 LAPELQYVLNLSLLPWILGSVAPSELGSHGRPPVSAS 241 ++P L+YVL L LLP +LGS AP E+ PP AS Sbjct: 338 MSPRLRYVL-LELLPQLLGSGAPPEIPRAASPPRRAS 373
>SEBP2_RAT (Q9QX72) SECIS-binding protein 2 (Selenocysteine insertion| sequence-binding protein 2) Length = 846 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -3 Query: 213 EPSSDGATEPRIHGRRLRFRTYCS 142 +P+ D AT P+IH R RFR YCS Sbjct: 606 QPAPDSATFPKIHSR--RFRDYCS 627
>DNAJ_HALMA (Q5UXH9) Chaperone protein dnaJ| Length = 384 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = -2 Query: 550 FQAAFGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLVAIMRRGVKITITGSLAP 371 F FGGGGR + R G D + RL L++A N A + + R G+ P Sbjct: 108 FDQFFGGGGRGGRGGSRRRQGQDLQTRLEIDLEEAYNGATKQLNVTRPEACDDCDGAGHP 167 Query: 370 P 368 P Sbjct: 168 P 168
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 30.0 bits (66), Expect = 6.3 Identities = 27/110 (24%), Positives = 43/110 (39%) Frame = +2 Query: 194 APSELGSHGRPPVSAS*EALPLHHASSVRQPAVAQARPRVATIATHVRLWLLQDXXXXXX 373 AP+ +G + P+S + +P A+ ++PAVA ARP + + V+ + D Sbjct: 729 APTTIGGLNKKPMSLASGLVP---AAPPKRPAVASARPSILP-SKDVKPKPIADAKAPEK 784 Query: 374 XXXAGNGNLDAAPHDRDKQTRCVERVIQPAVQAALPVQPRRPDRLLQVHP 523 A K T+ V + A A+ R P LL P Sbjct: 785 RASPSKPASAPASRSGSKSTQTVAKTTTAAAVASTGPSSRSPSTLLPKKP 834
>THTPA_RAT (Q8CGV7) Thiamine-triphosphatase (EC 3.6.1.28) (ThTPase)| Length = 223 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = +2 Query: 392 GNLDAAPHDRDKQTRCVERVIQPAVQAALPVQPRRPDRL---LQVHPPSAAERCLEGD 556 G ++A H++ + +E++I + +P Q + P +L LQ P +R LE D Sbjct: 155 GEVEAVVHEKAEVPAALEKIISVSSMLGVPAQEKAPAKLLVYLQRFRPQDYQRLLEAD 212
>LASP1_PONPY (Q5R5W0) LIM and SH3 domain protein 1 (LASP-1)| Length = 261 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%) Frame = -2 Query: 370 PLSAPILQQP--QPHMSSYGGY 311 P SAP+ QQP QP SYGGY Sbjct: 165 PTSAPVYQQPQQQPVAQSYGGY 186
>LASP1_HUMAN (Q14847) LIM and SH3 domain protein 1 (LASP-1) (MLN 50)| Length = 261 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%) Frame = -2 Query: 370 PLSAPILQQP--QPHMSSYGGY 311 P SAP+ QQP QP SYGGY Sbjct: 165 PTSAPVYQQPQQQPVAQSYGGY 186
>LASP1_MOUSE (Q61792) LIM and SH3 domain protein 1 (LASP-1) (MLN 50)| Length = 263 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%) Frame = -2 Query: 370 PLSAPILQQPQPHM--SSYGGY 311 P SAP+ QQPQ SSYGGY Sbjct: 167 PTSAPVYQQPQQQQMTSSYGGY 188
>RNT_XYLFT (Q87C86) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 211 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 526 GRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLVAI 416 G+ L AV+AAGLDW H + DA TA L I Sbjct: 164 GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTI 201
>RNT_XYLFA (Q9PBJ8) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 211 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 526 GRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLVAI 416 G+ L AV+AAGLDW H + DA TA L I Sbjct: 164 GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFCTI 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,478,061 Number of Sequences: 219361 Number of extensions: 1487048 Number of successful extensions: 4568 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4561 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
