ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HTF4_RAT (P51514) Transcription factor 12 (Transcription factor ... 33 0.96
2HTF4_HUMAN (Q99081) Transcription factor 12 (Transcription facto... 32 1.3
3HTF4_MESAU (Q60420) Transcription factor 12 (Transcription facto... 32 1.6
4SIR4_YEAST (P11978) Regulatory protein SIR4 (Silent information ... 31 2.8
5AMPM_BUCAP (Q8K9T1) Methionine aminopeptidase (EC 3.4.11.18) (MA... 31 3.6
6IL1FA_MOUSE (Q8R459) Interleukin-1 family member 10 (IL-1F10) 31 3.6

>HTF4_RAT (P51514) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (Salivary-specific cAMP response
           element-binding protein alpha) (SCBP alpha) (DNA-binding
           protein HTF4)
          Length = 707

 Score = 32.7 bits (73), Expect = 0.96
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 99  PLGSVNDRHRGKNQTTKLLCCQILGTHSPTSVRLN----KLSTCTRRSSRFPENRTSASE 266
           P+G++N  + G +  T      ++GTH   SV LN     LS+    S+    ++T  S 
Sbjct: 468 PIGNLNSNYGGSSLVTNSRSASMVGTHREDSVSLNGNHSVLSSTVAASNTELNHKTPESF 527

Query: 267 RGVTPGQS 290
           RG    QS
Sbjct: 528 RGGVQNQS 535



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>HTF4_HUMAN (Q99081) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (DNA-binding protein HTF4)
          Length = 682

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 99  PLGSVNDRHRGKNQTTKLLCCQILGTHSPTSVRLN----KLSTCTRRSSRFPENRTSASE 266
           P+GS+N  + G +         ++GTH   SV LN     LS+    SS    ++T  + 
Sbjct: 443 PIGSLNSNYGGSSLVASSRSASMVGTHREDSVSLNGNHSVLSSTVTTSSTDLNHKTQENY 502

Query: 267 RGVTPGQS 290
           RG    QS
Sbjct: 503 RGGLQSQS 510



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>HTF4_MESAU (Q60420) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (DNA-binding protein HTF4)
           (Beta-cell E-box transcriptional activator 1) (BETA1)
           (Fragment)
          Length = 437

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 99  PLGSVNDRHRGKNQTTKLLCCQILGTHSPTSVRLN----KLSTCTRRSSRFPENRTSASE 266
           P+G++N  + G +  T      ++GTH   SV LN     LS+    S+    ++T  + 
Sbjct: 198 PIGNLNSNYGGSSLVTNSRSASMVGTHREDSVNLNGNHSVLSSTVAASNTDLNHKTPENY 257

Query: 267 RGVTPGQS 290
           RG    QS
Sbjct: 258 RGGLQNQS 265



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>SIR4_YEAST (P11978) Regulatory protein SIR4 (Silent information regulator 4)|
          Length = 1358

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +3

Query: 45   NDSENFARQHSPN-FQGGRPLGSVNDRH-------RGKNQTTKLLCCQILGTHSPTSVRL 200
            N S +F+R  S   F  G+ +  V DR           N T  L    +LGTHS T  + 
Sbjct: 1180 NISLSFSRPASYGYFSVGKRVPIVEDRRVKQLDDITDSNTTEILTSVDVLGTHSQTGTQQ 1239

Query: 201  NKLSTCTRRSSRFPENRTSASE 266
            + + T T+++    +N+ S +E
Sbjct: 1240 SNMYTSTQKTELEIDNKDSVTE 1261



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>AMPM_BUCAP (Q8K9T1) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase|
           M)
          Length = 261

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 615 EILQSYIDRREQVRLIKELYGNQIGELFHSLPYTL 511
           E++Q+Y++      ++KE  G+ IG  FH  PY L
Sbjct: 150 EVIQNYVENNN-FSVVKEYCGHGIGRAFHEEPYVL 183



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>IL1FA_MOUSE (Q8R459) Interleukin-1 family member 10 (IL-1F10)|
          Length = 152

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 322 QRILGIGEARWYRLSTAVCCGYSLCRAKRPSQDPRLTRQGQD*I*ISDTHCNLAFEI 492
           QR LG      +RL  A C G+ LC    P Q  +LT++ +       TH    FE+
Sbjct: 103 QRSLGSA----FRLEAAACPGWFLCGPAEPQQPVQLTKESE-----PSTHTEFYFEM 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,790,101
Number of Sequences: 219361
Number of extensions: 1978313
Number of successful extensions: 5175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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