ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16m03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 908 bits (458), Expect = 0.0 Identities = 606/654 (92%), Gaps = 10/654 (1%) Strand = Plus / Minus Query: 2 ttttagttgtaaacgcatcatgcaaca--------gntgatgttgtgcgt-gtcttgtga 52 |||||||||| |||||||||||||||| | ||||||||||| | |||| |||| Sbjct: 3687 ttttagttgtgaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtga 3628 Query: 53 atcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcgagatg 112 || || ||||||||||||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct: 3627 atagttatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaagatg 3568 Query: 113 gtagaaaggaaaa-tcagtcagtaatgtggcttaagcccccactcagcttacagtcacta 171 ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 3567 gtagaaaggaaaaatcagtcgataatgtggcttaagcccccactcagcttacaatcacta 3508 Query: 172 atgcaactcatgacttgtcagtcgatcaggcatgaccaaccacaagatcatgtgaacaca 231 |||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||| || Sbjct: 3507 atgcgactcatgacatgtcagtcgatccagcatgaccaaccacaagatcatgtaaacgca 3448 Query: 232 gatgaagcgcttcttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtca 291 || | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct: 3447 gaaggagcgcttcttcagcggaagtagaccgacacaagtgggatgtcgacatcgttgtcg 3388 Query: 292 tcgtcatcctcacaggccaccacgacgtcgagatgacgccggtaagagggcacctccatc 351 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 3387 tcgtcatcctcacaggccaccacaacgtcgagatgacgccggtaagagggcacctccatc 3328 Query: 352 ttggccacctccctggcaacatcaactacctttctgtcaagccgttccttgtgcctgggg 411 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 3327 ttagccacctccctggcaacatcaacaaccttcctgtcaagccgttccttgtgcctgggg 3268 Query: 412 aacatagagttgtagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttc 471 ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 3267 aacatggagttgtacagcagagaggtgccacaggatatgctgtaagcgttcaggcccttc 3208 Query: 472 tccttgagccactccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcc 531 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 3207 tccttgagccactccaggagctccctcagcgtgatgttgcctgtcacagtccaccggtcc 3148 Query: 532 cagaccgtccacgacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatg 591 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3147 cagaccgtccacgacagctcctggtgcttgatggtcttgggtggaactggttcagcaatg 3088 Query: 592 gagaacagtgggatcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 ||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 3087 gagaagagagggatcgcaaggtttgcaaacgtgttgcggtagtcttcgaccttg 3034
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 724 bits (365), Expect = 0.0 Identities = 434/457 (94%) Strand = Plus / Minus Query: 189 tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 248 ||||| ||||| |||||||||||||||||||||| | ||| |||| | |||||||||||| Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336 Query: 249 gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 308 |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| || Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276 Query: 309 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 3216 Query: 369 aacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttgtagag 428 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct: 3215 aacatcaactaccttcctgtcaagccgttccttgtgcctggggaacatggagttgtacag 3156 Query: 429 cagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccactccag 488 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3155 cagcgaggtgccacaggatatgctgtaagcgttcaggcccttctccttgagccactccag 3096 Query: 489 gagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccacgacag 548 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3095 gagctccctcagcgtgatgttgcccgtcacagtccaccggtcccagaccgtccacgacaa 3036 Query: 549 ctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtgggatcgc 608 |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct: 3035 ctcctggtgcttgatggtcttgggtggaactggttcagcaatggagaagagagggatagc 2976 Query: 609 gaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 |||||||||||||||||||||||||||||| |||||| Sbjct: 2975 gaggtttgcaaacgtgttgcggtagtcttcaaccttg 2939 Score = 165 bits (83), Expect = 2e-37 Identities = 147/167 (88%), Gaps = 10/167 (5%) Strand = Plus / Minus Query: 1 attttagttgtaaacgcatcatgcaaca--------gntgatgttgtgcgt-gtcttgtg 51 ||||||| |||||||||||||||||||| | ||||||||||| | |||| ||| Sbjct: 3569 attttagctgtaaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtg 3510 Query: 52 aatcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcga-ga 110 |||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| | || Sbjct: 3509 aatcatgatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaaaga 3450 Query: 111 tggtagaaaggaaaatcagtcagtaatgtggcttaagcccccactca 157 ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3449 tggtagaaaggaaaatcagtcggtaatgtggcttaagcccccactca 3403
>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence Length = 836 Score = 381 bits (192), Expect = e-102 Identities = 345/396 (87%) Strand = Plus / Minus Query: 250 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 309 |||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720 Query: 310 accacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggca 369 ||||| ||||| ||||| || ||||| || |||||||||| |||||||||||||||||| Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcacctccaccttggccacctccctggcc 660 Query: 370 acatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttgtagagc 429 ||||| || ||||| |||| ||||| |||||||| || |||||||| |||||||| ||| Sbjct: 659 acatccaccaccttcttgtccagccgctccttgtgtctcgggaacatggagttgtacagc 600 Query: 430 agcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccactccagg 489 |||||||| || |||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 599 agcgaggtcccgcaggatatgctgtacgcgttcaaccccttctccttcagccactccagg 540 Query: 490 agctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccacgacagc 549 |||||||||||||| |||||||| ||||| |||||||||||||| || ||||| |||| Sbjct: 539 agctccctcagcgtcatgttgccagttacggtccaccggtcccacacggtccaggacatg 480 Query: 550 tcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtgggatcgcg 609 || |||||||| ||||||||||| || || || || || |||||||| || ||||| ||| Sbjct: 479 tcttggtgcttcatggtcttgggcggcacaggctccgccatggagaagagggggattgcg 420 Query: 610 aggtttgcaaacgtgttgcggtagtcttcgaccttg 645 ||||| ||||| ||||| ||||||||||| |||||| Sbjct: 419 aggttcgcaaatgtgttccggtagtcttcaaccttg 384
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 312329 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 312330 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 312389 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 312390 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 312449 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 312450 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 312509 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 312510 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 312551 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 295227 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 295228 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 295287 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 295288 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 295347 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 295348 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 295407 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 295408 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 295449 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Minus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 3350 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 3349 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 3290 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 3289 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 3230 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 3229 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 3170 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 3169 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 3110 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 3109 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 3068 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full insert sequence Length = 1533 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Minus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1243 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 1242 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 1183 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 1182 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 1123 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 1122 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 1063 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 1062 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 1003 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 1002 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 961 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full insert sequence Length = 1510 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Minus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1134 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 1133 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 1074 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 1073 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 1014 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 1013 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 954 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 953 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 894 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 893 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 852 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 295227 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 295228 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 295287 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 295288 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 295347 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 295348 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 295407 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 295408 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 295449 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 312329 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 312330 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 312389 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 312390 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 312449 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 312450 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 312509 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 312510 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 312551 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Minus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 9826 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 9825 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 9766 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 9765 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 9706 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 9705 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 9646 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 9645 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 9586 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 9585 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 9544 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Minus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 45320 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 45321 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 45380 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 45381 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 45440 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 45441 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 45500 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 45501 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 45560 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 45561 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 45602 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 321 bits (162), Expect = 2e-84 Identities = 342/402 (85%) Strand = Plus / Plus Query: 244 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 303 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425 Query: 304 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 363 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 2485 Query: 364 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttg 423 || || ||||| || ||||| |||| || || ||||||||||| |||||||| |||||| Sbjct: 2486 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagttg 2545 Query: 424 tagagcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccac 483 || |||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct: 2546 tacagcagcgaggtgccgcaagatatgctgtatgcattcaggcccttctccttgagccag 2605 Query: 484 tccaggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccac 543 ||||| ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| Sbjct: 2606 tccagaagctccctcagcgtgatgttgccagttatggtccagcggtcccaaacagtccag 2665 Query: 544 gacagctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtggg 603 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct: 2666 gccatgtcctggtgcttgatggtcttgggagggaccggctcagccatagagaagaggggg 2725 Query: 604 atcgcgaggtttgcaaacgtgttgcggtagtcttcgaccttg 645 || || ||||||||||| ||||| | ||||||||| |||||| Sbjct: 2726 attgcaaggtttgcaaatgtgttcctgtagtcttcaaccttg 2767 Score = 48.1 bits (24), Expect = 0.036 Identities = 33/36 (91%) Strand = Plus / Plus Query: 130 tcagtaatgtggcttaagcccccactcagcttacag 165 ||||||||||||||||| |||||||| || |||||| Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
>gb|AY103697.1| Zea mays PCO090876 mRNA sequence Length = 1314 Score = 228 bits (115), Expect = 2e-56 Identities = 274/325 (84%), Gaps = 2/325 (0%) Strand = Plus / Minus Query: 322 agatgacgccggtaagagggcacctccatcttggcca-cctccctggcaacatcaactac 380 ||||| || ||||| || ||||| |||| |||||||| | |||||||| | |||||| || Sbjct: 1188 agatggcggcggtaggaaggcacntccaacttggccaacntccctggccaaatcaaccac 1129 Query: 381 ctttctgtcaagccgttccttgtgcctggggaacatagagttgtagagcagcgaggtgcc 440 | | |||| ||||| |||||||| || |||||||| |||||||| |||| |||||| || Sbjct: 1128 ttct-tgtccagccgctccttgtgtctcgggaacatggagttgtacagcatcgaggtccc 1070 Query: 441 acaggatatgctgtaagcgttcagacccttctccttgagccactccaggagctccctcag 500 || ||||||||||| || |||| ||||||||||| ||||||||||||||||||||||| Sbjct: 1069 gcatgatatgctgtacgcattcaagcccttctccttcagccactccaggagctccctcag 1010 Query: 501 cgtgatgttgcccgttacagtccaccggtcccagaccgtccacgacagctcctggtgctt 560 ||| |||||||| ||||| ||||| |||||||| || ||||| |||| || |||||||| Sbjct: 1009 cgtcatgttgccagttaccgtccagcggtcccacacggtccaggacatgtcttggtgctt 950 Query: 561 gatggtcttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaa 620 ||||||||||||||| || || || || |||||||| || |||||||| ||||| ||||| Sbjct: 949 gatggtcttgggtggcacaggctccgccatggagaagagggggatcgccaggttcgcaaa 890 Query: 621 cgtgttgcggtagtcttcgaccttg 645 ||||| ||||||||||| |||||| Sbjct: 889 tgtgttccggtagtcttcaaccttg 865
>gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence Length = 771 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 343 acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 402 ||||||| |||||||||||||||||| |||||||| ||||| || | |||| |||||| Sbjct: 307 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 366 Query: 403 tgcctggggaacatagagttgtagagcagcgaggtgccacaggatatgctgta 455 ||||| | |||||| |||||| ||||| ||||||| ||||| |||||||| Sbjct: 367 tgcctcgcgaacatgctgttgtacagcagacaggtgccgcaggacatgctgta 419
>gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence Length = 1726 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 343 acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 402 ||||||| |||||||||||||||||| |||||||| ||||| || | |||| |||||| Sbjct: 1463 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 1404 Query: 403 tgcctggggaacatagagttgtagagcagcgaggtgccacaggatatgctgta 455 ||||| | |||||| |||||| ||||| ||||||| ||||| |||||||| Sbjct: 1403 tgcctcgcgaacatgctgttgtacagcagacaggtgccgcaggacatgctgta 1351
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 67.9 bits (34), Expect = 4e-08 Identities = 304/394 (77%) Strand = Plus / Minus Query: 248 agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 307 |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| |||| Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286 Query: 308 ccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctgg 367 |||| ||| ||| || || | |||||| ||| || |||| ||||||||||||||||| Sbjct: 3285 ccacgccgatgtccaggtgcctccggtactcggggacgtccaccttggccacctccctgg 3226 Query: 368 caacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagttgtaga 427 | | || || ||||| || ||||| ||||||||||| | ||||| |||||| | Sbjct: 3225 cgatgtcgaccaccttcttggtcagccggtccttgtgcctcgcaaacatgttgttgtaca 3166 Query: 428 gcagcgaggtgccacaggatatgctgtaagcgttcagacccttctccttgagccactcca 487 |||| |||||||| || || |||||||| ||| | || ||||| || || ||||| || Sbjct: 3165 gcagggaggtgccgcacgagatgctgtaggcggtgaggcccttgtcggcgaaccactgca 3106 Query: 488 ggagctccctcagcgtgatgttgcccgttacagtccaccggtcccagaccgtccacgaca 547 ||||||| || |||| ||||||| || | |||||||||||| || ||||| | Sbjct: 3105 ggagctcggcgagggtgaggttgccctggacggaccaccggtcccacacggtccagctcg 3046 Query: 548 gctcctggtgcttgatggtcttgggtggaaccggttcagcaatggagaacagtgggatcg 607 ||||| |||||| ||| |||||| || ||||| || || || ||||| ||||||| | Sbjct: 3045 tctccttgtgcttcatgaccttgggcgggaccggctcggccatcgagaagagtgggaggg 2986 Query: 608 cgaggtttgcaaacgtgttgcggtagtcttcgac 641 ||||||| || || |||||||||||||| ||||| Sbjct: 2985 cgaggttcgcgaatgtgttgcggtagtcctcgac 2952
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 ||||||||||| |||||||| |||||||||| ||| || || | ||| ||||||| || Sbjct: 10271560 cttgggtggaagaggttcagccatggagaacattggtattgccaagttagcaaacgaatt 10271619 Query: 627 gcggtagtcttcgac 641 ||||||||||||||| Sbjct: 10271620 gcggtagtcttcgac 10271634
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 ||||||||||| |||||||| |||||||||| ||| || || | ||| ||||||| || Sbjct: 132973 cttgggtggaagaggttcagccatggagaacattggtattgccaagttagcaaacgaatt 133032 Query: 627 gcggtagtcttcgac 641 ||||||||||||||| Sbjct: 133033 gcggtagtcttcgac 133047
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 ||||||||||| |||||||| |||||||||| ||| || || | ||| ||||||| || Sbjct: 10269661 cttgggtggaagaggttcagccatggagaacattggtattgccaagttagcaaacgaatt 10269720 Query: 627 gcggtagtcttcgac 641 ||||||||||||||| Sbjct: 10269721 gcggtagtcttcgac 10269735
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 ||||||||||| |||||||| |||||||||| ||| || || | ||| ||||||| || Sbjct: 3078 cttgggtggaagaggttcagccatggagaacattggtattgccaagttagcaaacgaatt 3019 Query: 627 gcggtagtcttcgac 641 ||||||||||||||| Sbjct: 3018 gcggtagtcttcgac 3004
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 420 gttgtagagcagcgaggtgccacaggatatgctgtaagcg 459 |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 3186 gttgtacagcagcgaagtgccacaggaaatgctgtaagcg 3147 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 |||||||||||| |||||||| || ||||| ||||| | || ||||| ||||| || || Sbjct: 3039 cttgggtggaacaggttcagccattgagaatagtggcagtgccaggttcgcaaatgtatt 2980 Query: 627 gcggtagtcttc 638 |||||||||||| Sbjct: 2979 gcggtagtcttc 2968
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 420 gttgtagagcagcgaggtgccacaggatatgctgtaagcg 459 |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 29429685 gttgtacagcagcgaagtgccacaggaaatgctgtaagcg 29429646 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 |||||||||||| |||||||| || ||||| ||||| | || ||||| ||||| || || Sbjct: 29429538 cttgggtggaacaggttcagccattgagaatagtggcagtgccaggttcgcaaatgtatt 29429479 Query: 627 gcggtagtcttc 638 |||||||||||| Sbjct: 29429478 gcggtagtcttc 29429467 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 cagcgaggtgccacaggatat 449 ||||||||||||||||||||| Sbjct: 28149367 cagcgaggtgccacaggatat 28149387
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 |||||||||||| |||||||| || ||||| ||||| | || ||||| ||||| || || Sbjct: 3039 cttgggtggaacaggttcagccattgagaatagtggcagtgccaggttcgcaaatgtatt 2980 Query: 627 gcggtagtcttc 638 |||||||||||| Sbjct: 2979 gcggtagtcttc 2968 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 427 agcagcgaggtgccacaggatatgctgtaagcg 459 |||||||| ||||||||||| |||||||||||| Sbjct: 3179 agcagcgaagtgccacaggaaatgctgtaagcg 3147
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 420 gttgtagagcagcgaggtgccacaggatatgctgtaagcg 459 |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 92607 gttgtacagcagcgaagtgccacaggaaatgctgtaagcg 92568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 567 cttgggtggaaccggttcagcaatggagaacagtgggatcgcgaggtttgcaaacgtgtt 626 |||||||||||| |||||||| || ||||| ||||| | || ||||| ||||| || || Sbjct: 92460 cttgggtggaacaggttcagccattgagaatagtggcagtgccaggttcgcaaatgtatt 92401 Query: 627 gcggtagtcttc 638 |||||||||||| Sbjct: 92400 gcggtagtcttc 92389
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301 Query: 312 cac 314 ||| Sbjct: 3300 cac 3298
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943 Query: 312 cac 314 ||| Sbjct: 52942 cac 52940
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262 Query: 312 cac 314 ||| Sbjct: 3261 cac 3259
>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme, complete cds, clone: RAFL22-01-B01 Length = 474 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149 Query: 312 cac 314 ||| Sbjct: 148 cac 146
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178 Query: 312 cac 314 ||| Sbjct: 3177 cac 3175
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275 Query: 312 cac 314 ||| Sbjct: 3274 cac 3272
>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 646 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331 Query: 312 cac 314 ||| Sbjct: 330 cac 328
>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108 Query: 312 cac 314 ||| Sbjct: 1107 cac 1105
>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 252 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 311 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614 Query: 312 cac 314 ||| Sbjct: 613 cac 611
>gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC:79524 IMAGE:6977687), complete cds Length = 3174 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 acctccatcttggccacctccc 364 |||||||||||||||||||||| Sbjct: 1307 acctccatcttggccacctccc 1286
>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence Length = 164963 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 343 acctccatcttggccacctccc 364 |||||||||||||||||||||| Sbjct: 87684 acctccatcttggccacctccc 87705
>ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA Length = 3174 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 acctccatcttggccacctccc 364 |||||||||||||||||||||| Sbjct: 1307 acctccatcttggccacctccc 1286
>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1 (ORF), clone CanUBC-1 Length = 807 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 286 ttgtcatcgtcatcctcacaggccac 311 ||||||||||||||||| |||||||| Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
>emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11 Length = 1855 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 acctccatcttggccacctccc 364 |||||||||||||||||||||| Sbjct: 1179 acctccatcttggccacctccc 1158
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 cagcgaggtgccacaggatat 449 ||||||||||||||||||||| Sbjct: 4912 cagcgaggtgccacaggatat 4932
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 cagcgaggtgccacaggatat 449 ||||||||||||||||||||| Sbjct: 132663 cagcgaggtgccacaggatat 132683
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 acatcgttgtcatcgtcatc 299 |||||||||||||||||||| Sbjct: 158321 acatcgttgtcatcgtcatc 158340
>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA Length = 1047 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 gtcgacatcgttgtcatcgtcatc 299 |||| ||||||||||||||||||| Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA Length = 3270 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tcacaggccaccacgacgtc 320 |||||||||||||||||||| Sbjct: 2191 tcacaggccaccacgacgtc 2210
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cttgtgaatcgtgatgtctg 65 |||||||||||||||||||| Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
>gb|AC183482.3| Dasypus novemcinctus clone VMRC5-411P7, complete sequence Length = 85272 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 ccactccaggagctccctca 499 |||||||||||||||||||| Sbjct: 85173 ccactccaggagctccctca 85154
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cttgtgaatcgtgatgtctg 65 |||||||||||||||||||| Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the 3' end of a novel gene for thyroid hormone receptor-associated protein, 150 kDa subunit (TRAP150) (FLJ22082), a novel transcript (FLJ22938), a gene for a novel protein (FLJ10647), the 3' end of a gene for Ser/Thr-like kinase (MGC4796) and two CpG islands, complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ccacctccctggcaacatca 375 |||||||||||||||||||| Sbjct: 67335 ccacctccctggcaacatca 67354
>ref|XM_502040.1| Yarrowia lipolytica CLIB122, YALI0C20141g predicted mRNA Length = 549 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 tcagacccttctccttgagc 480 |||||||||||||||||||| Sbjct: 508 tcagacccttctccttgagc 489
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgaagcgcttcttcagcgga 253 |||||||||||||||||||| Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189286 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gagatggtagaaaggaaaat 126 |||||||||||||||||||| Sbjct: 153914 gagatggtagaaaggaaaat 153933
>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence Length = 254 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 276 gtcgacatcgttgtcatcgtcatcctca 303 |||| |||||| |||||||||||||||| Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward read cpg19b9.ft1a Length = 264 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gaaaggaaaatcagtcagta 135 |||||||||||||||||||| Sbjct: 169 gaaaggaaaatcagtcagta 188
>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and pdu gene clusters, strain A0 34/86 Length = 84189 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cttgtgaatcgtgatgtctg 65 |||||||||||||||||||| Sbjct: 54791 cttgtgaatcgtgatgtctg 54810
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 tcagacccttctccttgagc 480 |||||||||||||||||||| Sbjct: 2726896 tcagacccttctccttgagc 2726877 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,299,496 Number of Sequences: 3902068 Number of extensions: 4299496 Number of successful extensions: 81791 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81465 Number of HSP's gapped (non-prelim): 323 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
