ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17a24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRYD_SYNY3 (P77967) Cryptochrome DASH 29 5.5
2RL22_MYCPN (P75575) 50S ribosomal protein L22 29 5.5

>CRYD_SYNY3 (P77967) Cryptochrome DASH|
          Length = 489

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 255 PSFFCG*STAPDMLKPEPNLKSDAPEMPPIWFPNCGVSSR 374
           P FF     AP  L P PN+K +    PP +FP      R
Sbjct: 173 PCFF-----APSQLLPSPNIKLELTAPPPEFFPQINFDHR 207



to top

>RL22_MYCPN (P75575) 50S ribosomal protein L22|
          Length = 159

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -1

Query: 202 LKCQLLVAKPTLCFHGKVSSSPKKWVILYRSSLNFHIGFAVVANRLELGTGYIYMYVHPA 23
           L CQL+V K T      +S++PKK   L    LN  I  A   + +     Y++  V   
Sbjct: 19  LVCQLIVGKKTADAQNILSNTPKKAATLIAKLLNSAIANATNNHGMNGDALYVFECVANQ 78

Query: 22  GEPLXKT 2
           G  + +T
Sbjct: 79  GPSMKRT 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,767,488
Number of Sequences: 219361
Number of extensions: 805742
Number of successful extensions: 2087
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top