ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17a24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 3e-17
2gb|DQ153245.1| Oryza sativa (japonica cultivar-group) EIN3-like ... 98 3e-17
3gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 98 3e-17
4dbj|AB074971.2| Oryza sativa (japonica cultivar-group) OsEIL1 mR... 98 3e-17
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
6gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 98 3e-17
7dbj|AK103227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
8dbj|AK101076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
9dbj|AK098987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
10dbj|AK098905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
11dbj|AK072465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
12dbj|AK060826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
13gb|BT017092.1| Zea mays clone EL01N0361C03.c mRNA sequence 56 1e-04
14gb|AY107845.1| Zea mays PCO092605 mRNA sequence 56 1e-04
15gb|AY104931.1| Zea mays PCO092603 mRNA sequence 52 0.002
16gb|CP000264.1| Jannaschia sp. CCS1, complete genome 44 0.41
17gb|AC073529.15| Homo sapiens X BAC RP11-120D5 (Roswell Park Canc... 42 1.6
18emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chro... 42 1.6
19gb|U69729.1|HSU69729 Human Xp22 cosmid U110E1, complete sequence 42 1.6
20gb|AC171335.1| Mus musculus BAC clone RP23-2K15 from chromosome ... 42 1.6
21emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chro... 40 6.5
22gb|AC131787.3| Mus musculus BAC clone RP24-397K14 from chromosom... 40 6.5
23emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chr... 40 6.5
24emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in ... 40 6.5
25gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04... 40 6.5
26gb|AC120429.6| Mus musculus chromosome 18, clone RP24-546J19, co... 40 6.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                            
Query: 270      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11751081 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11751022

                                                                       
Query: 330      gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                  |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 11751021 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 11750970



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                            
Query: 270      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11746256 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11746197

                                                                       
Query: 330      gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                  |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 11746196 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 11746145



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                            
Query: 24       gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
                |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 11751334 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 11751278

                               
Query: 84       gcaaaacctatatga 98
                |||||||||||||||
Sbjct: 11751277 gcaaaacctatatga 11751263
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>gb|DQ153245.1| Oryza sativa (japonica cultivar-group) EIN3-like protein 1 (EIL1)
            mRNA, complete cds
          Length = 1923

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1871 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1812

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 1811 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1760
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>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                          
Query: 270    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 140176 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 140117

                                                                     
Query: 330    gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 140116 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 140065



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                          
Query: 270    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 135351 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 135292

                                                                     
Query: 330    gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 135291 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 135240



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                          
Query: 24     gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
              |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 140429 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 140373

                             
Query: 84     gcaaaacctatatga 98
              |||||||||||||||
Sbjct: 140372 gcaaaacctatatga 140358
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>dbj|AB074971.2| Oryza sativa (japonica cultivar-group) OsEIL1 mRNA for
            ethylene-insensitive-3-like protein, complete cds
          Length = 2330

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2021 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1962

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 1961 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1910
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                            
Query: 270      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11747844 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11747785

                                                                       
Query: 330      gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                  |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 11747784 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 11747733



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                            
Query: 270      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11743019 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11742960

                                                                       
Query: 330      gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                  |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 11742959 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 11742908



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                            
Query: 24       gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
                |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 11748097 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 11748041

                               
Query: 84       gcaaaacctatatga 98
                |||||||||||||||
Sbjct: 11748040 gcaaaacctatatga 11748026
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>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Plus

                                                                          
Query: 270    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 159572 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 159631

                                                                     
Query: 330    gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
                |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 159632 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 159683



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Plus

                                                                          
Query: 24     gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
              |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 159319 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 159375

                             
Query: 84     gcaaaacctatatga 98
              |||||||||||||||
Sbjct: 159376 gcaaaacctatatga 159390
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>dbj|AK103227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123C05, full
            insert sequence
          Length = 2521

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2205 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2146

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 2145 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 2094



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 24   gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
            |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 2458 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 2402

                           
Query: 84   gcaaaacctatatga 98
            |||||||||||||||
Sbjct: 2401 gcaaaacctatatga 2387
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>dbj|AK101076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C06, full
            insert sequence
          Length = 2572

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2211 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2152

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 2151 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 2100
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>dbj|AK098987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D20, full
            insert sequence
          Length = 2428

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2057 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1998

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 1997 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1946



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 24   gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
            |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 2310 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 2254

                           
Query: 84   gcaaaacctatatga 98
            |||||||||||||||
Sbjct: 2253 gcaaaacctatatga 2239
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>dbj|AK098905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D08, full
            insert sequence
          Length = 2401

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2085 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2026

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 2025 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1974



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 24   gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
            |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 2338 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 2282

                           
Query: 84   gcaaaacctatatga 98
            |||||||||||||||
Sbjct: 2281 gcaaaacctatatga 2267
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>dbj|AK072465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023116C13, full
            insert sequence
          Length = 2743

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1745 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1686

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 1685 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1634



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 24   gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
            |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 1998 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 1942

                           
Query: 84   gcaaaacctatatga 98
            |||||||||||||||
Sbjct: 1941 gcaaaacctatatga 1927
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>dbj|AK060826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B06, full
            insert sequence
          Length = 2491

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 99/115 (86%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                        
Query: 270  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 329
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2085 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2026

                                                                   
Query: 330  gagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
              |||| ||||||||||||| ||||||   || || ||||| |||||||||||||
Sbjct: 2025 ttgatgtcgcccatctggttaccgaat---ggagtatcgtcgcggatgaagaact 1974



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 24   gctggatggacatacatgtatatataaccagttccaagttccagcctatttgcaactact 83
            |||||| |||||||||||||||   |||||||||||||||||||||  |||||||||| |
Sbjct: 2338 gctggacggacatacatgtata---aaccagttccaagttccagccattttgcaactaat 2282

                           
Query: 84   gcaaaacctatatga 98
            |||||||||||||||
Sbjct: 2281 gcaaaacctatatga 2267
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>gb|BT017092.1| Zea mays clone EL01N0361C03.c mRNA sequence
          Length = 1010

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 49  aaccagttccaagttccagcctatttgcaactactgcaaaacctatat 96
           ||||||||||| |||||||||   ||||| ||||||||||||||||||
Sbjct: 818 aaccagttccaggttccagccgtcttgcagctactgcaaaacctatat 771



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 288 gacatgttgaagccagagccgaacctgaaatccgatgcgccggagatgccgcccatctgg 347
           ||||||||||| ||||||||||||||||| ||||  | || || |||| |||||||||||
Sbjct: 615 gacatgttgaaaccagagccgaacctgaactccgccgtgctggtgatgtcgcccatctgg 556



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 229 ttattcttcagtagtaccagttggggccgtcgttcttctgcg 270
           |||||||||||||| |||| ||||  ||||||||||||||||
Sbjct: 692 ttattcttcagtagaaccaattggtcccgtcgttcttctgcg 651
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>gb|AY107845.1| Zea mays PCO092605 mRNA sequence
          Length = 1614

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 49   aaccagttccaagttccagcctatttgcaactactgcaaaacctatat 96
            ||||||||||| |||||||||   ||||| ||||||||||||||||||
Sbjct: 1402 aaccagttccaggttccagccgtcttgcagctactgcaaaacctatat 1355



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 288  gacatgttgaagccagagccgaacctgaaatccgatgcgccggagatgccgcccatctgg 347
            ||||||||||| ||||||||||||||||| ||||  | || || |||| |||||||||||
Sbjct: 1202 gacatgttgaaaccagagccgaacctgaactccgccgtgctggtgatgtcgcccatctgg 1143



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 229  ttattcttcagtagtaccagttggggccgtcgttcttctgcg 270
            |||||||||||||| |||| ||||  ||||||||||||||||
Sbjct: 1276 ttattcttcagtagaaccaattggccccgtcgttcttctgcg 1235
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>gb|AY104931.1| Zea mays PCO092603 mRNA sequence
          Length = 881

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 96/118 (81%), Gaps = 6/118 (5%)
 Strand = Plus / Minus

                                                                       
Query: 270 gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgc-- 327
           |||||||||||| |||  ||||||||||| ||||  ||||||||||| ||||  ||||  
Sbjct: 567 gggtagtcgacgccgctagacatgttgaaaccaggaccgaacctgaactccggcgcgctg 508

                                                                     
Query: 328 -cggagatgccgcccatctggtttccgaattgcggcgtttcgtcacggatgaagaact 384
            ||| |||| ||||||||||| |  |||||   ||||| ||||| |||||||||||||
Sbjct: 507 gcggcgatgtcgcccatctggctcacgaat---ggcgtgtcgtcgcggatgaagaact 453



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 229 ttattcttcagtagtaccagttggggccgtcgttcttctg 268
           |||||||||||||| |||| ||||  ||||||||| ||||
Sbjct: 617 ttattcttcagtagaaccaattggtcccgtcgttcctctg 578
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 319     ccgatgcgccggagatgccgcc 340
               ||||||||||||||||||||||
Sbjct: 1666921 ccgatgcgccggagatgccgcc 1666942
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>gb|AC073529.15| Homo sapiens X BAC RP11-120D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78659

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    tatatgaaaattaagagaaga 112
             |||||||||||||||||||||
Sbjct: 34731 tatatgaaaattaagagaaga 34711
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>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
             sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   agttgacattttaaaagctta 209
             |||||||||||||||||||||
Sbjct: 52263 agttgacattttaaaagctta 52283
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>gb|U69729.1|HSU69729 Human Xp22 cosmid U110E1, complete sequence
          Length = 44185

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    tatatgaaaattaagagaaga 112
             |||||||||||||||||||||
Sbjct: 10128 tatatgaaaattaagagaaga 10148
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>gb|AC171335.1| Mus musculus BAC clone RP23-2K15 from chromosome 12, complete sequence
          Length = 180226

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   agttgacattttaaaagctta 209
             |||||||||||||||||||||
Sbjct: 82685 agttgacattttaaaagctta 82665
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>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete
              sequence
          Length = 196093

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    cccatggaaacacaaggttg 174
              ||||||||||||||||||||
Sbjct: 161040 cccatggaaacacaaggttg 161059
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>gb|AC131787.3| Mus musculus BAC clone RP24-397K14 from chromosome 18, complete
             sequence
          Length = 159775

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    atatgaaaattaagagaaga 112
             ||||||||||||||||||||
Sbjct: 11038 atatgaaaattaagagaaga 11057
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>emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chromosome 10 Contains a
             aldolase A, fructose-bisphosphate pseudogene 2, four novel
             genes, the gene for erythroid differentiation-related
             factor 1 (EDRF1), the 3' end of the MMP21 gene for matrix
             metalloproteinase 21 and one CpG island, complete sequence
          Length = 174530

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tactgacatcactgaacatg 467
             ||||||||||||||||||||
Sbjct: 93124 tactgacatcactgaacatg 93143
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>emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in linkage group 15,
              complete sequence
          Length = 213513

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    ctttcccatggaaacacaaggttg 174
              ||||||||| ||||||||||||||
Sbjct: 201694 ctttcccattgaaacacaaggttg 201717
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>gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04, complete sequence
          Length = 178524

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    atggacatacatgtatatat 48
             ||||||||||||||||||||
Sbjct: 72638 atggacatacatgtatatat 72657
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>gb|AC120429.6| Mus musculus chromosome 18, clone RP24-546J19, complete sequence
          Length = 147268

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atatgaaaattaagagaaga 112
             ||||||||||||||||||||
Sbjct: 96116 atatgaaaattaagagaaga 96097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,688,392
Number of Sequences: 3902068
Number of extensions: 3688392
Number of successful extensions: 88821
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88651
Number of HSP's gapped (non-prelim): 145
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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