ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16l24 |
|---|---|
| Clone Library Name | barley_pub |
>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 308 Score = 253 bits (645), Expect = 5e-67 Identities = 128/154 (83%), Positives = 134/154 (87%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFR INPQT+MLGQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIAINYR Sbjct: 155 VIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEK 214 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 KWTDGL +++FDTHSKTNE+TVQEMLSLA KYNKAVQEEDEL PEKLAI NV Sbjct: 215 MLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNV 274 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 234 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF Sbjct: 275 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308
>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (MAD1) Length = 310 Score = 198 bits (503), Expect = 1e-50 Identities = 99/154 (64%), Positives = 113/154 (73%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLIN M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR Sbjct: 156 VIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQK 215 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 W +GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LAI NV Sbjct: 216 MLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNV 275 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 234 G+QD K+HLEEHV LM+SNIVQ L MLDTVVF Sbjct: 276 GKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome-associated PAD1 homolog 1) Length = 310 Score = 198 bits (503), Expect = 1e-50 Identities = 99/154 (64%), Positives = 113/154 (73%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLIN M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR Sbjct: 156 VIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQK 215 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 W +GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LAI NV Sbjct: 216 MLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNV 275 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 234 G+QD K+HLEEHV LM+SNIVQ L MLDTVVF Sbjct: 276 GKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome regulatory complex subunit p37B) (Yippee-interacting protein 5) Length = 308 Score = 193 bits (491), Expect = 4e-49 Identities = 92/154 (59%), Positives = 114/154 (74%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLINP ++LGQEPRQTTSN+GHL KPS+QALIHGLNRHYYSI+INYR Sbjct: 154 VIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQK 213 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 W DGL + ++ H NE+TV EML LA YNK++++E+++ PE+LAI NV Sbjct: 214 MLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNV 273 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 234 G+QD K+HLEE V +M +NIVQ LG MLDT+VF Sbjct: 274 GKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVF 307
>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)| Length = 308 Score = 160 bits (405), Expect = 3e-39 Identities = 78/154 (50%), Positives = 103/154 (66%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLINP T+M+GQEPRQTTSN+GH+NKPSIQALIHGL RHYYS+ INY+ Sbjct: 155 VIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEI 214 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 W GL+++ F++ ++ N ++ +M SL+ +Y + VQ E L PE+L I V Sbjct: 215 MLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYV 274 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 234 G+QD KKHL+ V + +NI L MLD+V F Sbjct: 275 GKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308
>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 312 Score = 154 bits (388), Expect = 3e-37 Identities = 75/151 (49%), Positives = 100/151 (66%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFR INPQ+M L QEPRQTTSN+GHL KPSIQALIHGLNRHYYSI I YR Sbjct: 158 VIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQK 217 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 W D + ++ + + N+E ++ ML LA Y KA+++E + ++LAI NV Sbjct: 218 MLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNV 277 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 243 G+ D K+H+ + VS +++ NIVQ+L M+ T Sbjct: 278 GKMDPKRHIADEVSKMLNDNIVQSLAGMMAT 308
>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11| Length = 311 Score = 132 bits (332), Expect = 1e-30 Identities = 67/152 (44%), Positives = 93/152 (61%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLI+P T++ QEPRQTTSNVG LNKP+IQ+LIHGLNRHYYS+ I+Y Sbjct: 157 VIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELN 216 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 +W GL + + + N E ++ + +A +Y K ++EE EL ++L V Sbjct: 217 MLMNLHKEQWQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYV 276 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 240 G+QD KKHL E ++ NIV L +++V Sbjct: 277 GKQDPKKHLSETAERVLEENIVSVLTAGVNSV 308
>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)| Length = 306 Score = 124 bits (311), Expect = 3e-28 Identities = 65/152 (42%), Positives = 90/152 (59%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLI+ ++ EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y Sbjct: 152 VIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETK 211 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 +W GL + ++ ++N + M+ +A +Y+K ++EE EL E+L V Sbjct: 212 MLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYV 271 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 240 GRQD KKHL E + +NIV L +++V Sbjct: 272 GRQDPKKHLSETADETLENNIVSVLTAGVNSV 303
>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11| Length = 306 Score = 122 bits (307), Expect = 8e-28 Identities = 63/152 (41%), Positives = 90/152 (59%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXX 516 VIDAFRLI+ ++ QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y Sbjct: 152 VIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETK 211 Query: 515 XXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLAIANV 336 +W GL ++ + N E + M+++A +Y+K ++EE EL E+L V Sbjct: 212 MLLNLHKEQWQSGLKMQDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYV 271 Query: 335 GRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 240 G+QD KKHL + N + N V L ++++ Sbjct: 272 GKQDPKKHLAKTAENTLEENTVSVLTAGVNSI 303
>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III| Length = 319 Score = 83.2 bits (204), Expect = 7e-16 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Frame = -1 Query: 695 VIDAFRLINPQTMMLGQ-----EPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXX 531 ++DAFR +NP + + EPRQTTSN+GHL KPS+ +++HGL YYS+ + YR Sbjct: 154 MLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMG 213 Query: 530 XXXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELP---- 363 W D L + + K EE + + L +NK + E E P Sbjct: 214 SNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADK 273 Query: 362 --PEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 246 + + G+ +AK+ L+ S+L++ ++ L M++ Sbjct: 274 KGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314
>VL3_REOVL (P17376) Minor core protein lambda-3| Length = 1267 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -1 Query: 482 DGLIIKKFDTHSKTNEETVQEMLSLAIKYNK 390 DGL+I +T K N ET+Q+ML L KY + Sbjct: 735 DGLMIIDGNTAGKVNSETIQKMLELISKYGE 765
>YGF6_YEAST (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 intergenic| region Length = 527 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = -1 Query: 692 IDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYR 537 I + +++PQ ++G + ++V H+ + S L+H RH+ S+ +N R Sbjct: 298 ISSIAVVDPQGNLIGNI---SVTDVKHVTRTSQYPLLHNTCRHFVSVILNLR 346
>H2AW_MOUSE (Q8CCK0) Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2)| Length = 371 Score = 30.4 bits (67), Expect = 5.4 Identities = 9/37 (24%), Positives = 24/37 (64%) Frame = -1 Query: 689 DAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIH 579 D F +++ ++++LGQ+ T S++ H+ ++ ++H Sbjct: 180 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH 216
>H2AW_HUMAN (Q9P0M6) Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2)| Length = 371 Score = 30.4 bits (67), Expect = 5.4 Identities = 9/37 (24%), Positives = 24/37 (64%) Frame = -1 Query: 689 DAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIH 579 D F +++ ++++LGQ+ T S++ H+ ++ ++H Sbjct: 180 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,121,712 Number of Sequences: 219361 Number of extensions: 1599667 Number of successful extensions: 4262 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4260 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
