>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  150 bits (380), Expect = 1e-36
 Identities = 75/95 (78%), Positives = 85/95 (89%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +GLFVG+NKG V+TKR  PPRP++RKGK +KR  F+RNLI+ VAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMRS 198
           KDKRALKVAKRKLGTHKRAK+ + EMSSVLRKMRS
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 98

>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  148 bits (374), Expect = 6e-36
 Identities = 74/95 (77%), Positives = 83/95 (87%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +GLFVG+NKG V+T+R L PRP+ RKGK +KR  F+R LIR VAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMRS 198
           KDKRALKVAKRKLGTHKRAK+ + EMSSVLRKMRS
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  147 bits (372), Expect = 1e-35
 Identities = 74/95 (77%), Positives = 83/95 (87%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +GLFVG+NKG V+T+R L PRP  RKGK +KR  F+RNLI+ VAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 67

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMRS 198
           KDKRALKVAKRKLGTHKRAK+ + EMSSVLRKMRS
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score =  122 bits (306), Expect = 5e-28
 Identities = 58/81 (71%), Positives = 69/81 (85%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +GLFVG+NKG ++TK+ L PRPSDRKGK +KR HFVRNLIR VAGF PYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVG 67

Query: 302 KDKRALKVAKRKLGTHKRAKK 240
           KDKRALKV + K+G  + +K+
Sbjct: 68  KDKRALKVRQEKVGHSQESKE 88



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 303 KGQACTQGRQEKAWYSQESKEKXXGDVK 220
           K +   + RQEK  +SQESKE+  GDV+
Sbjct: 68  KDKRALKVRQEKVGHSQESKEEERGDVQ 95

>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  114 bits (286), Expect = 1e-25
 Identities = 57/91 (62%), Positives = 72/91 (79%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK+   PRPS RKG  ++RV  VR ++R VAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKMRS 198
           ALK+ KRKLGTH R KK + EM+ VLRKM++
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQA 96

>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score =  110 bits (276), Expect = 1e-24
 Identities = 54/93 (58%), Positives = 73/93 (78%)
 Frame = -3

Query: 479 GLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGK 300
           GL VG+NKG V+TKR LP RPS RKG+ +KR  FVR+++R VAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 299 DKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           DKRA K+AK++LGT KRAK    E++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/93 (56%), Positives = 71/93 (76%)
 Frame = -3

Query: 479 GLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGK 300
           GL VG+NKG  +TKR LP RPS RKG  +KR  FVR+++R VAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 299 DKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           DKRA K+AK++LGT KRAK    E++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score =  105 bits (261), Expect = 8e-23
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK    PR S R+G+ TK   FVR++IR V GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           ALK  K+++GTH RAK+ + E+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score =  105 bits (261), Expect = 8e-23
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK    PR S R+G+ TK   FVR++IR V GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           ALK  K+++GTH RAK+ + E+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score =  104 bits (259), Expect = 1e-22
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK    PR S R+G+ TK   FVR++IR V GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           ALK  K+++GTH RAK+ + E+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score =  102 bits (255), Expect = 4e-22
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK    PR S R+G+ TK   FVR++IR V  FAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           ALK  K+++GTH RAK+ + E+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 48/89 (53%), Positives = 62/89 (69%)
 Frame = -3

Query: 470 VGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGKDKR 291
           VG+NKG  +TK    PR S R+ + T    FVR++IR V GFAPYE+R  ELLKV K KR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67

Query: 290 ALKVAKRKLGTHKRAKKXKXEMSSVLRKM 204
           ALK  K+++GTH RAK+ + E+S+VL  M
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAM 96

>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 43/93 (46%), Positives = 63/93 (67%)
 Frame = -3

Query: 479 GLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVGK 300
           GL VG+NKG   T+  +  R +  KG  +K+   VR L+R + GFAPYE+R+ E+L++ K
Sbjct: 7   GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66

Query: 299 DKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           DKRALK  KR++GTH+RAK  + E+ +V+   R
Sbjct: 67  DKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 99

>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 47/94 (50%), Positives = 64/94 (68%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +GL VG+NKG   T R + PR S  KG  +KR  FVR +++ VAG APYE+R+ ELL+  
Sbjct: 9   TGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNS 68

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
           KDKRA K+AK++LGT  RAK+   E+  V+ + R
Sbjct: 69  KDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102

>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 43/94 (45%), Positives = 66/94 (70%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           SG+  G+NKG   T + + P+ S RKG  ++R  FVR++++ VAG APYE+R+ EL++  
Sbjct: 4   SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNA 63

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
            +KRA K+AK++LGTHKRA +   EM+ V+ + R
Sbjct: 64  GEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97

>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 10/102 (9%)
 Frame = -3

Query: 476 LFVGINKGXVITKRXLPPRPSDRKGKG----------TKRVHFVRNLIRXVAGFAPYEKR 327
           L +G+NKG   +K        D+K KG          T+   F+R+L+R V G APYEKR
Sbjct: 7   LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66

Query: 326 ITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
             ELLKV KDKRALK  KR+LGTH RAK+ + E+S++L ++R
Sbjct: 67  TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108

>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 38/94 (40%), Positives = 64/94 (68%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +G+ +G+NKG  +T+    P+ S +KG  + R  FVR+L+R +AG +PYE+R+ +L++  
Sbjct: 4   TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 63

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
            +KRA KVAK++LG+  RAK    EM++++   R
Sbjct: 64  GEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 38/94 (40%), Positives = 63/94 (67%)
 Frame = -3

Query: 482 SGLFVGINKGXVITKRXLPPRPSDRKGKGTKRVHFVRNLIRXVAGFAPYEKRITELLKVG 303
           +G+ +G+NKG  +T     P+ S +KG  + R  FVR+L+R +AG +PYE+R+ +L++  
Sbjct: 4   TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 63

Query: 302 KDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMR 201
            +KRA KVAK++LG+  RAK    EM++++   R
Sbjct: 64  GEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 344 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMS 222
           A Y K + + LK  K+KR  K+AKR+  +  RA + K E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

>R1B16_SOLDE (Q6L400) Putative late blight resistance protein homolog R1B-16|
          Length = 1284

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 208  FLRTLDISXXFFFALL*VPSFLLATLSARLSFPTLRSSVMRFSYGANPATXLIKFLTKCT 387
            FL+ LD+        +    F L  LSAR+   ++ SS+       N  T ++K +++CT
Sbjct: 944  FLKVLDLEHQVVIDSIPTELFYLRYLSARIEQNSIPSSISNL---WNLETLILKHVSRCT 1000

Query: 388  LFVP 399
            + +P
Sbjct: 1001 VLLP 1004

>RS6_RAT (P62755) 40S ribosomal protein S6|
          Length = 249

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 344 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMS 222
           A Y K + + +K  K+KR  ++AKR+  +  RA   K E S
Sbjct: 207 AEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESS 247

>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 344 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMS 222
           A Y K + + +K  K+KR  ++AKR+  +  RA   K E S
Sbjct: 207 AEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESS 247

>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 344 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMS 222
           A Y K + + +K  K+KR  ++AKR+  +  RA   K E S
Sbjct: 207 AEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESS 247

>RS6_CHICK (P47838) 40S ribosomal protein S6|
          Length = 249

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 344 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKXKXEMS 222
           A Y K + + +K  K+KR  ++AKR+  +  RA   K E S
Sbjct: 207 ADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESS 247

>CDC7_HUMAN (O00311) Cell division cycle 7-related protein kinase (EC 2.7.11.1)|
           (CDC7-related kinase) (HsCdc7) (huCdc7)
          Length = 574

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 314 LKVGKDKRALKVAKRKLGTHKRAKKXKXEMSSVLRKMRS 198
           +K+ K  + + V  RKL T K+A   K   S+V+RK  S
Sbjct: 305 VKLMKQSKTVDVLSRKLATKKKAISTKVMNSAVMRKTAS 343


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,393,310
Number of Sequences: 219361
Number of extensions: 958489
Number of successful extensions: 2526
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)