>ODPA_KLULA (O13366) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 412

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +2

Query: 257 LLGNSTSVRTIHLYSRNF*KDE*AAIQTYGDGNPGDEILVQAVVVSTGNEGCPQHVCDLK 436
           ++G S+S+R +    RNF K+  A  Q   +  PGD+ LVQ  +  T  EG    V +L 
Sbjct: 10  VVGKSSSLRLV----RNFSKNVRALSQVADETKPGDDDLVQIDLPETSFEGYLLDVPELS 65

Query: 437 Y 439
           Y
Sbjct: 66  Y 66

>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated|
           protein 5.10) (Ultrahigh sulfur keratin-associated
           protein 5.10)
          Length = 202

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 62  CNSCQPCNCQPWCAHCC 12
           CN C+PC C   C  CC
Sbjct: 142 CNCCKPCCCSSGCGSCC 158

>CABL1_HUMAN (Q8TDN4) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 633

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +1

Query: 76  NGLAFTKKKKNDQKFASPSAVIQVPKGSFLGEPLDANGSGHPRQANFFCARGRSSLPPVS 255
           +G A  ++ + D  F S    +QVP  +FLG     +GSG   + N F       + P++
Sbjct: 200 SGAAGQEELEEDDAFIS----VQVPAAAFLGSGTPGSGSGSRGRLNSF----TQGILPIA 251

Query: 256 FTWQFYIRKNYSSIQPEFLEGRVSSNTDIRRWQPR 360
           F+      +NY S++     G  S+   ++R + R
Sbjct: 252 FSRP--TSQNYCSLEQPGQGGSTSAFEQLQRSRRR 284

>IGHA1_HUMAN (P01876) Ig alpha-1 chain C region|
          Length = 353

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = -1

Query: 573 FPRSTFGSGLVYQTGSPNGFCLSFRATRCLTSC*RHQSIFCCHTEYLRSQTC*GQPSFPV 394
           FP S   SG +Y T S     L+  AT+CL           CH ++  + +       PV
Sbjct: 53  FPPSQDASGDLYTTSSQ----LTLPATQCLAG-----KSVTCHVKHYTNPSQDVTVPCPV 103

Query: 393 ETTTACTRISSPGLPSPYVC 334
            +T      S+P  PSP  C
Sbjct: 104 PSTPPTPSPSTPPTPSPSCC 123

>NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 333

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 520 WLLSFIPGYPMLNFMLTTSIYLLLSYRVFEITNVLRAAFIPSRDNNRLYQNFIA 359
           W+L  +    M++ ML    Y+++  RVF   N  +  FI  +DN  +Y ++ A
Sbjct: 267 WILFLL----MISSMLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSYFA 316

>KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin associated|
          protein 16.1)
          Length = 105

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 59 NSCQPCNCQPWCAHCC 12
          N C+ C CQP C  CC
Sbjct: 17 NCCEECCCQPGCCGCC 32

>YKK2_CAEEL (P34279) Hypothetical protein C02F5.2|
          Length = 85

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 93  KEEKK*SKICVSLRSDPSSQGQLLRGAPRCKWIRASPPSELLLCAWKKQPSTGIIYLAIL 272
           K+E+  SK   S+   PSS G+ L+     +W  +  P    L   KK+P+   ++ A  
Sbjct: 5   KKEENPSKSDTSISLPPSSTGEALQNYTESEWNASDDPYSAELLNVKKKPNRVNVFSATE 64

Query: 273 HP*ELFIYT 299
              E  I T
Sbjct: 65  KNMETIIVT 73

>RPOC_THEMA (P36252) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1690

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 312 RRTSEQQYRHTEMATPAMKFWY-RRLLSLLGMKAALSTFVISNTRYDSKR 458
           R    ++  H E+A PA+  WY   + S+LG    +ST  + N  Y   R
Sbjct: 88  REARRKRMGHIELAAPAVHIWYLESIPSVLGTLLNMSTSDLENIIYYGSR 137

>NUP1_YEAST (P20676) Nucleoporin NUP1 (Nuclear pore protein NUP1)|
          Length = 1076

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 76  NGLAFTKKKKNDQKFASPSAVIQVPKGS----FLGEPLDANGSGHPRQANFF 219
           NG +FTK   N +K  SP++       S     LG+P DA G+   + A  F
Sbjct: 751 NGFSFTKFNHNKEKSNSPTSFFDGSASSTPIPVLGKPTDATGNTTSKSAFSF 802


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,871,075
Number of Sequences: 219361
Number of extensions: 2168819
Number of successful extensions: 5683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5678
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)