ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16l22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475947.1| Oryza sativa (japonica cultivar-group), predic... 157 5e-35
2dbj|AK058748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
3dbj|AK120154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 8e-34
4dbj|AK120492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
5ref|NM_192933.1| Oryza sativa (japonica cultivar-group), predic... 147 5e-32
6dbj|AK103098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
7gb|AY107452.1| Zea mays PCO065525 mRNA sequence 113 7e-22
8gb|AY105277.1| Zea mays PCO065524 mRNA sequence 103 7e-19
9gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome... 68 4e-08
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
12dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
13dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
14gb|AY111324.1| Zea mays CL35052_1 mRNA sequence 64 6e-07
15ref|NM_124004.2| Arabidopsis thaliana unknown protein AT5G46340 ... 50 0.009
16gb|AY136339.1| Arabidopsis thaliana putative protein (At5g46340)... 50 0.009
17dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 50 0.009
18emb|AL035258.10|HS1097P24 Human DNA sequence from clone RP5-1097... 46 0.14
19gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome... 42 2.1
20gb|AF424606.1|AF424606 Arabidopsis thaliana AT5g46340/MPL12_14 m... 42 2.1
21gb|AC151714.3| Mus musculus BAC clone RP23-437A9 from chromosome... 42 2.1
22gb|DQ157131.1| Norovirus Hu/Villingen2309/2004/DE RNA-dependent ... 40 8.4
23gb|DQ157126.1| Norovirus Hu/WKDHaussach8968/2003/DE RNA-dependen... 40 8.4
24gb|DQ157110.1| Norovirus Hu/Leonberg1661/2003/DE RNA-dependent R... 40 8.4
25gb|DQ157082.1| Norovirus Hu/Mannheim51912/2002/DE RNA-dependent ... 40 8.4
26gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, comp... 40 8.4
27emb|BX629346.17| Zebrafish DNA sequence from clone DKEY-16N21 in... 40 8.4
28emb|AL161449.7| Human DNA sequence from clone RP11-382H24 on chr... 40 8.4
29gb|DQ440547.1| Norovirus Hu/GGII.4/patient F/2006/NLD RNA polyme... 40 8.4
30gb|AY057926.1| Norwalk-like virus strain C815 RNA polymerase gen... 40 8.4
31gb|AC044792.6| Homo sapiens chromosome 19 clone CTC-258N23, comp... 40 8.4
32gb|AY780432.1| Norovirus Hu/GII/Brisbane/01/2004/AU RNA-dependen... 40 8.4
33dbj|AB240190.1| Norovirus Hu/NV/Hokkaido/332/2005/JP genes for R... 40 8.4
34dbj|AB240189.1| Norovirus Hu/NV/Hokkaido/322/2005/JP genes for R... 40 8.4
35dbj|AB240186.1| Norovirus Hu/NV/Hokkaido/300/2005/JP genes for R... 40 8.4
36dbj|AB240185.1| Norovirus Hu/NV/Hokkaido/286/2005/JP genes for R... 40 8.4
37dbj|AB240184.1| Norovirus Hu/NV/Hokkaido/284/2004/JP genes for R... 40 8.4
38gb|AC090423.11| Homo sapiens Xp BAC RP11-86G5 (Roswell Park Canc... 40 8.4
39gb|AC093309.2| Homo sapiens chromosome 5 clone RP11-97P23, compl... 40 8.4
40gb|DQ078801.2| Norovirus Hu/GII.4/Hunter 532D/04O/AU ORF1 and ca... 40 8.4
41gb|DQ351906.1| Norovirus Hu/0672HA/2004/NL RNA polymerase gene, ... 40 8.4
42gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6... 40 8.4
43gb|AY884188.1| Cochliobolus heterostrophus nonribosomal peptide ... 40 8.4
44gb|AY673857.1| Norovirus Hu/CN2887/1998/US RNA polymerase gene, ... 40 8.4
45gb|AY900231.1| Norovirus Hu/GII.4/2004/NL RNA-dependent RNA poly... 40 8.4
46gb|DQ288305.1| Norovirus Hu/GII/Yamaguchi/2005/JP RNA-dependent ... 40 8.4
47gb|DQ288304.1| Norovirus Hu/GII/Shizuoka/2005/JP RNA-dependent R... 40 8.4
48gb|DQ288303.1| Norovirus Hu/GII/Hokkaido/2004/JP RNA-dependent R... 40 8.4
49gb|AF023268.1|AF023268 Homo sapiens clk2 kinase (CLK2), propin1,... 40 8.4
50dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.4
51gb|AY739661.1| Norovirus Hu/mussels/Mos18I2004b/UK polymerase ge... 40 8.4 
>ref|XM_475947.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1623

 Score =  157 bits (79), Expect = 5e-35
 Identities = 241/295 (81%)
 Strand = Plus / Minus

                                                                        
Query: 321  agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
            ||||||||| ||||||| ||| | || ||||||| ||| || || ||||| || || || 
Sbjct: 1595 agtgagcagaaatacaggcatgcagatatggcaatccctgcaataaaattttgatatagc 1536

                                                                        
Query: 381  cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
            || |||||||||||||||||||| || ||| || |||| ||   |||||||||||| || 
Sbjct: 1535 cgattgttgtctctactgggaataaaagctcccttcagtacacctgtgatctcaaacacc 1476

                                                                        
Query: 441  cggtatgacagcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagccc 500
            |||||||| || | ||||||||||| ||| || ||||||||||||||||  || ||  | 
Sbjct: 1475 cggtatgatagaagaagatagattgctgtagtaagcatgaagttaagcaatggataatct 1416

                                                                        
Query: 501  ggaatgaaagacagaagccatttgggctgcccgtttggtacactagacctgagccaaatg 560
            || |  ||||| || |||||||| |||||||| |||||    ||||||||||||||||||
Sbjct: 1415 ggtacaaaagataggagccattttggctgcccatttggcgtgctagacctgagccaaatg 1356

                                                                   
Query: 561  tggatctgggaaatataagtctccagggtgaccttgccaagccaagcgaaaagag 615
            || ||||||||||| || ||||| || |||| |||||||||||| ||||||||||
Sbjct: 1355 tgaatctgggaaatgtatgtctctagtgtgatcttgccaagccaggcgaaaagag 1301
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>dbj|AK058748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H05, full
           insert sequence
          Length = 1129

 Score =  157 bits (79), Expect = 5e-35
 Identities = 241/295 (81%)
 Strand = Plus / Minus

                                                                       
Query: 321 agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
           ||||||||| ||||||| ||| | || ||||||| ||| || || ||||| || || || 
Sbjct: 682 agtgagcagaaatacaggcatgcagatatggcaatccctgcaataaaattttgatatagc 623

                                                                       
Query: 381 cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
           || |||||||||||||||||||| || ||| || |||| ||   |||||||||||| || 
Sbjct: 622 cgattgttgtctctactgggaataaaagctcccttcagtacacctgtgatctcaaacacc 563

                                                                       
Query: 441 cggtatgacagcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagccc 500
           |||||||| || | ||||||||||| ||| || ||||||||||||||||  || ||  | 
Sbjct: 562 cggtatgatagaagaagatagattgctgtagtaagcatgaagttaagcaatggataatct 503

                                                                       
Query: 501 ggaatgaaagacagaagccatttgggctgcccgtttggtacactagacctgagccaaatg 560
           || |  ||||| || |||||||| |||||||| |||||    ||||||||||||||||||
Sbjct: 502 ggtacaaaagataggagccattttggctgcccatttggcgtgctagacctgagccaaatg 443

                                                                  
Query: 561 tggatctgggaaatataagtctccagggtgaccttgccaagccaagcgaaaagag 615
           || ||||||||||| || ||||| || |||| |||||||||||| ||||||||||
Sbjct: 442 tgaatctgggaaatgtatgtctctagtgtgatcttgccaagccaggcgaaaagag 388



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 253 tcatttacttggcaattctac 273
           |||||||||||||||||||||
Sbjct: 731 tcatttacttggcaattctac 711
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>dbj|AK120154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030A13, full
            insert sequence
          Length = 4351

 Score =  153 bits (77), Expect = 8e-34
 Identities = 233/285 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
            |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 4260 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 4201

                                                                        
Query: 391  ctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatactcggtatgaca 450
            |||| |||||||| || |||| | ||| |||   ||| | |||||| |||| |||||| |
Sbjct: 4200 ctctgctgggaataaaagctgacttcaacacacctgtcagctcaaacactctgtatgata 4141

                                                                        
Query: 451  gcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagcccggaatgaaag 510
              | |||||| |||| ||| |  ||||| ||||| ||||  ||||| |||||||||||||
Sbjct: 4140 taagaagatatattgctgtagcaagcataaagttgagcagtgggtaacccggaatgaaag 4081

                                                                        
Query: 511  acagaagccatttgggctgcccgtttggtacactagacctgagccaaatgtggatctggg 570
            | ||||||||||| ||||||||||| || |   ||||||||||||||||||||||||| |
Sbjct: 4080 agagaagccattttggctgcccgttaggcatgttagacctgagccaaatgtggatctgag 4021

                                                         
Query: 571  aaatataagtctccagggtgaccttgccaagccaagcgaaaagag 615
            | ||||| |||||||| || | |||||||||||| || |||||||
Sbjct: 4020 agatataggtctccagagtaatcttgccaagccacgcaaaaagag 3976
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>dbj|AK120492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119L11, full
            insert sequence
          Length = 2139

 Score =  149 bits (75), Expect = 1e-32
 Identities = 240/295 (81%)
 Strand = Plus / Minus

                                                                        
Query: 321  agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
            ||||||||| ||||||| ||| | || ||||||| ||| || || ||||| || || || 
Sbjct: 1697 agtgagcagaaatacaggcatgcagatatggcaatccctgcaataaaattttgatatagc 1638

                                                                        
Query: 381  cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
            || |||||||||||||||||||| || ||| || |||| ||   |||||||||||| || 
Sbjct: 1637 cgattgttgtctctactgggaataaaagctcccttcagtacacctgtgatctcaaacacc 1578

                                                                        
Query: 441  cggtatgacagcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagccc 500
            |||||||| || | ||||||||||| ||| || ||||||||||||||||  || ||  | 
Sbjct: 1577 cggtatgatagaagaagatagattgctgtagtaagcatgaagttaagcaatggataatct 1518

                                                                        
Query: 501  ggaatgaaagacagaagccatttgggctgcccgtttggtacactagacctgagccaaatg 560
            || |  ||||| || |||||||| |||||||| |||||    ||||||||||||||||||
Sbjct: 1517 ggtacaaaagataggagccattttggctgcccatttggcgtgctagacctgagccaaatg 1458

                                                                   
Query: 561  tggatctgggaaatataagtctccagggtgaccttgccaagccaagcgaaaagag 615
            || ||||||||||| || ||| | || |||| |||||||||||| ||||||||||
Sbjct: 1457 tgaatctgggaaatgtatgtccctagtgtgatcttgccaagccaggcgaaaagag 1403



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  tcatttacttggcaattctac 273
            |||||||||||||||||||||
Sbjct: 1746 tcatttacttggcaattctac 1726
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>ref|NM_192933.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1626

 Score =  147 bits (74), Expect = 5e-32
 Identities = 224/274 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
            |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 1588 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 1529

                                                                        
Query: 391  ctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatactcggtatgaca 450
            |||| |||||||| || |||| | ||| |||   ||| | |||||| |||| |||||| |
Sbjct: 1528 ctctgctgggaataaaagctgacttcaacacacctgtcagctcaaacactctgtatgata 1469

                                                                        
Query: 451  gcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagcccggaatgaaag 510
              | |||||| |||| ||| |  ||||| ||||| ||||  ||||| |||||||||||||
Sbjct: 1468 taagaagatatattgctgtagcaagcataaagttgagcagtgggtaacccggaatgaaag 1409

                                                                        
Query: 511  acagaagccatttgggctgcccgtttggtacactagacctgagccaaatgtggatctggg 570
            | ||||||||||| ||||||||||| || |   ||||||||||||||||||||||||| |
Sbjct: 1408 agagaagccattttggctgcccgttaggcatgttagacctgagccaaatgtggatctgag 1349

                                              
Query: 571  aaatataagtctccagggtgaccttgccaagcca 604
            | ||||| |||||||| || | ||||||||||||
Sbjct: 1348 agatataggtctccagagtaatcttgccaagcca 1315
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>dbj|AK103098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118M16, full
            insert sequence
          Length = 2391

 Score =  145 bits (73), Expect = 2e-31
 Identities = 232/285 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
            |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 1975 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 1916

                                                                        
Query: 391  ctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatactcggtatgaca 450
            |||| |||||||| || |||| | ||| |||   ||| | |||||| |||| |||||| |
Sbjct: 1915 ctctgctgggaataaaagctgacttcaacacacctgtcagctcaaacactctgtatgata 1856

                                                                        
Query: 451  gcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagcccggaatgaaag 510
              | |||||| |||| ||| |  ||||| ||||| ||||  ||||| |||||||||||||
Sbjct: 1855 taagaagatatattgctgtagcaagcataaagttgagcagtgggtaacccggaatgaaag 1796

                                                                        
Query: 511  acagaagccatttgggctgcccgtttggtacactagacctgagccaaatgtggatctggg 570
            | ||||||||||| |||||||||||  | |   ||||||||||||||||||||||||| |
Sbjct: 1795 agagaagccattttggctgcccgttatgcatgttagacctgagccaaatgtggatctgag 1736

                                                         
Query: 571  aaatataagtctccagggtgaccttgccaagccaagcgaaaagag 615
            | ||||| |||||||| || | |||||||||||| || |||||||
Sbjct: 1735 agatataggtctccagagtaatcttgccaagccacgcaaaaagag 1691
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>gb|AY107452.1| Zea mays PCO065525 mRNA sequence
          Length = 999

 Score =  113 bits (57), Expect = 7e-22
 Identities = 234/293 (79%)
 Strand = Plus / Minus

                                                                       
Query: 321 agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
           |||||||||  |||||| || || |||||||| | ||| || | |||||| |||||||| 
Sbjct: 535 agtgagcagagatacaggcacacagagatggcgatcccagcaacgaaattttggtacaga 476

                                                                       
Query: 381 cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
           ||| | || || |||||||| || || || | | |||  || || ||||||||||| || 
Sbjct: 475 cggctattatccctactggggataaaagccgacttcaagacattcgtgatctcaaacaca 416

                                                                       
Query: 441 cggtatgacagcaaaagatagattgatgtcgttagcatgaagttaagcatcgggtagccc 500
           |||||||| || | ||||||||| |  || || ||||||||||||||||| || ||  | 
Sbjct: 415 cggtatgatagaagaagatagatcgccgtagtaagcatgaagttaagcataggatattct 356

                                                                       
Query: 501 ggaatgaaagacagaagccatttgggctgcccgtttggtacactagacctgagccaaatg 560
           || |||||| | ||||||||||| ||||| || ||||| |  |||||||| |||||||| 
Sbjct: 355 ggtatgaaacaaagaagccattttggctgtccatttggcatgctagacctaagccaaata 296

                                                                
Query: 561 tggatctgggaaatataagtctccagggtgaccttgccaagccaagcgaaaag 613
           |||||||| || ||||||||||| || || | |||||||||||| ||||||||
Sbjct: 295 tggatctgagagatataagtctctagtgtaatcttgccaagccatgcgaaaag 243
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>gb|AY105277.1| Zea mays PCO065524 mRNA sequence
          Length = 747

 Score =  103 bits (52), Expect = 7e-19
 Identities = 136/164 (82%)
 Strand = Plus / Minus

                                                                       
Query: 420 acgtttgtgatctcaaatactcggtatgacagcaaaagatagattgatgtcgttagcatg 479
           ||||||||||||||||| || |||||||| || | ||||||||| | ||| || ||||||
Sbjct: 164 acgtttgtgatctcaaacacacggtatgatagaagaagatagatcgctgtagtaagcatg 105

                                                                       
Query: 480 aagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccgtttggt 539
           ||||||||||| || ||  | || |||||| | |||||||| || || || || ||||| 
Sbjct: 104 aagttaagcataggataatctggtatgaaacaaagaagccactttggttgtccatttggc 45

                                                       
Query: 540 acactagacctgagccaaatgtggatctgggaaatataagtctc 583
           |  |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 44  atgctagacctaagccaaatatggatctgagaaatataagtctc 1
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>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11,
             complete sequence
          Length = 112796

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 547   acctgagccaaatgtggatctgggaaatataagtctccagggtgaccttgccaagcca 604
             |||||||||||||||| ||||||||||| || ||||| || |||| ||||||||||||
Sbjct: 59927 acctgagccaaatgtgaatctgggaaatgtatgtctctagtgtgatcttgccaagcca 59984



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 104/128 (81%)
 Strand = Plus / Plus

                                                                         
Query: 321   agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
             ||||||||| ||||||| ||| | || ||||||| ||| || || ||||| || || || 
Sbjct: 59155 agtgagcagaaatacaggcatgcagatatggcaatccctgcaataaaattttgatatagc 59214

                                                                         
Query: 381   cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
             || |||||||||||||||||||| || ||| || |||| ||   |||||||||||| || 
Sbjct: 59215 cgattgttgtctctactgggaataaaagctcccttcagtacacctgtgatctcaaacacc 59274

                     
Query: 441   cggtatga 448
             ||||||||
Sbjct: 59275 cggtatga 59282



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 455   aagatagattgatgtcgttagcatgaagttaagca 489
             ||||||||||| ||| || ||||||||||||||||
Sbjct: 59369 aagatagattgctgtagtaagcatgaagttaagca 59403



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 253   tcatttacttggcaattctac 273
             |||||||||||||||||||||
Sbjct: 59010 tcatttacttggcaattctac 59030
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 547      acctgagccaaatgtggatctgggaaatataagtctccagggtgaccttgccaagcca 604
                |||||||||||||||| ||||||||||| || ||||| || |||| ||||||||||||
Sbjct: 28741214 acctgagccaaatgtgaatctgggaaatgtatgtctctagtgtgatcttgccaagcca 28741271



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 104/128 (81%)
 Strand = Plus / Plus

                                                                            
Query: 321      agtgagcagcaatacagacatacggagatggcaaccccggcgatgaaattctggtacagg 380
                ||||||||| ||||||| ||| | || ||||||| ||| || || ||||| || || || 
Sbjct: 28740442 agtgagcagaaatacaggcatgcagatatggcaatccctgcaataaaattttgatatagc 28740501

                                                                            
Query: 381      cggttgttgtctctactgggaatgaaggctgccctcagcacgtttgtgatctcaaatact 440
                || |||||||||||||||||||| || ||| || |||| ||   |||||||||||| || 
Sbjct: 28740502 cgattgttgtctctactgggaataaaagctcccttcagtacacctgtgatctcaaacacc 28740561

                        
Query: 441      cggtatga 448
                ||||||||
Sbjct: 28740562 cggtatga 28740569



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 455      aagatagattgatgtcgttagcatgaagttaagca 489
                ||||||||||| ||| || ||||||||||||||||
Sbjct: 28740656 aagatagattgctgtagtaagcatgaagttaagca 28740690



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 253      tcatttacttggcaattctac 273
                |||||||||||||||||||||
Sbjct: 28740297 tcatttacttggcaattctac 28740317
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 474      agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
                ||||| ||||| ||||  ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 25229236 agcataaagttgagcagtgggtaacccggaatgaaagagagaagccattttggctgcccg 25229177

                  
Query: 534      tt 535
                ||
Sbjct: 25229176 tt 25229175



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 547      acctgagccaaatgtggatctgggaaatataagtctccagggtgaccttgccaagcca 604
                |||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||
Sbjct: 25228226 acctgagccaaatgtggatctgagagatataggtctccagagtaatcttgccaagcca 25228169



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                            
Query: 331      aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
                |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 25229468 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 25229409

                             
Query: 391      ctctactgggaat 403
                |||| ||||||||
Sbjct: 25229408 ctctgctgggaat 25229396
to top
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1158C05
          Length = 145514

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 474   agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
             ||||| ||||| ||||  ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 26280 agcataaagttgagcagtgggtaacccggaatgaaagagagaagccattttggctgcccg 26221

               
Query: 534   tt 535
             ||
Sbjct: 26220 tt 26219



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 547   acctgagccaaatgtggatctgggaaatataagtctccagggtgaccttgccaagcca 604
             |||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||
Sbjct: 25270 acctgagccaaatgtggatctgagagatataggtctccagagtaatcttgccaagcca 25213



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 331   aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
             |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 26512 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 26453

                          
Query: 391   ctctactgggaat 403
             |||| ||||||||
Sbjct: 26452 ctctgctgggaat 26440
to top
>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0035I14
          Length = 117919

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 474   agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
             ||||| ||||| ||||  ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 95245 agcataaagttgagcagtgggtaacccggaatgaaagagagaagccattttggctgcccg 95186

               
Query: 534   tt 535
             ||
Sbjct: 95185 tt 95184



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 547   acctgagccaaatgtggatctgggaaatataagtctccagggtgaccttgccaagcca 604
             |||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||
Sbjct: 94235 acctgagccaaatgtggatctgagagatataggtctccagagtaatcttgccaagcca 94178



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 331   aatacagacatacggagatggcaaccccggcgatgaaattctggtacaggcggttgttgt 390
             |||||||||||||||||||||||| |||||| |  ||||| || || || || ||||| |
Sbjct: 95477 aatacagacatacggagatggcaatcccggcaacaaaattttgatatagacgattgttat 95418

                          
Query: 391   ctctactgggaat 403
             |||| ||||||||
Sbjct: 95417 ctctgctgggaat 95405
to top
>gb|AY111324.1| Zea mays CL35052_1 mRNA sequence
          Length = 866

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 506 gaaagacagaagccatttgggctgcccgtttggtacactagacctgagccaaatgtggat 565
           |||||| |||||| | || ||||| ||||| || | ||||||||||||||||||||| | 
Sbjct: 484 gaaagatagaagcaactttggctgtccgttcggaatactagacctgagccaaatgtgaaa 543

                               
Query: 566 ctgggaaatataagtctcca 585
           ||| ||||||||| ||||||
Sbjct: 544 ctgagaaatataactctcca 563
to top
>ref|NM_124004.2| Arabidopsis thaliana unknown protein AT5G46340 mRNA, complete cds
          Length = 2238

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 474  agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
            |||||||| || ||||| ||||| |||||||| | ||| ||||||||||| || ||||||
Sbjct: 1705 agcatgaaattgagcatagggtatcccggaataatagagagaagccattttggttgcccg 1646

             
Query: 534  t 534
            |
Sbjct: 1645 t 1645
to top
>gb|AY136339.1| Arabidopsis thaliana putative protein (At5g46340) mRNA, complete cds
          Length = 2208

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 474  agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
            |||||||| || ||||| ||||| |||||||| | ||| ||||||||||| || ||||||
Sbjct: 1678 agcatgaaattgagcatagggtatcccggaataatagagagaagccattttggttgcccg 1619

             
Query: 534  t 534
            |
Sbjct: 1618 t 1618
to top
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
          Length = 87434

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 474   agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
             |||||||| || ||||| ||||| |||||||| | ||| ||||||||||| || ||||||
Sbjct: 55648 agcatgaaattgagcatagggtatcccggaataatagagagaagccattttggttgcccg 55707

              
Query: 534   t 534
             |
Sbjct: 55708 t 55708
to top
>emb|AL035258.10|HS1097P24 Human DNA sequence from clone RP5-1097P24 on chromosome 20p11.21-12.3
             Contains a putative novel gene, ESTs, STSs and GSSs,
             complete sequence
          Length = 133072

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 406   aggctgccctcagcacgtttgtg 428
             |||||||||||||||||||||||
Sbjct: 58842 aggctgccctcagcacgtttgtg 58864
to top
>gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome 9, complete sequence
          Length = 158058

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 501    ggaatgaaagacagaagccatttgg 525
              |||||||||| ||||||||||||||
Sbjct: 151785 ggaatgaaagtcagaagccatttgg 151761
to top
>gb|AF424606.1|AF424606 Arabidopsis thaliana AT5g46340/MPL12_14 mRNA, complete cds
          Length = 2229

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 474  agcatgaagttaagcatcgggtagcccggaatgaaagacagaagccatttgggctgcccg 533
            |||||||| || |||||  |||| |||||||| | ||| ||||||||||| || ||||||
Sbjct: 1705 agcatgaaattgagcatacggtatcccggaataatagagagaagccattttggttgcccg 1646

             
Query: 534  t 534
            |
Sbjct: 1645 t 1645
to top
>gb|AC151714.3| Mus musculus BAC clone RP23-437A9 from chromosome 9, complete sequence
          Length = 217761

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 501   ggaatgaaagacagaagccatttgg 525
             |||||||||| ||||||||||||||
Sbjct: 76852 ggaatgaaagtcagaagccatttgg 76828
to top
>gb|DQ157131.1| Norovirus Hu/Villingen2309/2004/DE RNA-dependent RNA polymerase
           gene, partial cds
          Length = 289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 84  acctgagccaaatgtggttctggg 61
to top
>gb|DQ157126.1| Norovirus Hu/WKDHaussach8968/2003/DE RNA-dependent RNA polymerase
           gene, partial cds
          Length = 293

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 88  acctgagccaaatgtggttctggg 65
to top
>gb|DQ157110.1| Norovirus Hu/Leonberg1661/2003/DE RNA-dependent RNA polymerase
           gene, partial cds
          Length = 294

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 89  acctgagccaaatgtggttctggg 66
to top
>gb|DQ157082.1| Norovirus Hu/Mannheim51912/2002/DE RNA-dependent RNA polymerase
           gene, partial cds
          Length = 264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 59  acctgagccaaatgtggttctggg 36
to top
>gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, complete sequence
          Length = 165789

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    aatgaaagacagaagccatt 522
              ||||||||||||||||||||
Sbjct: 130198 aatgaaagacagaagccatt 130179
to top
>emb|BX629346.17| Zebrafish DNA sequence from clone DKEY-16N21 in linkage group 6, complete
              sequence
          Length = 214213

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    ggaagaagcagccttccacc 248
              ||||||||||||||||||||
Sbjct: 200357 ggaagaagcagccttccacc 200376
to top
>emb|AL161449.7| Human DNA sequence from clone RP11-382H24 on chromosome 9p22.1-23
              Contains a peroxiredoxin 1 (PRDX1) pseudogene, a Sjogren
              syndrome antigen B (autoantigen La) (SSB) pseudogene, the
              3' end of the MPDZ gene for multiple PDZ domain protein and
              a CpG island, complete sequence
          Length = 169660

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    gagcccctagatgcaaatgg 188
              ||||||||||||||||||||
Sbjct: 100140 gagcccctagatgcaaatgg 100121
to top
>gb|DQ440547.1| Norovirus Hu/GGII.4/patient F/2006/NLD RNA polymerase gene, partial
           cds
          Length = 286

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 93  acctgagccaaatgtggttctggg 70
to top
>gb|AY057926.1| Norwalk-like virus strain C815 RNA polymerase gene, partial cds
          Length = 298

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 34  acctgagccaaatgtggttctggg 11
to top
>gb|AC044792.6| Homo sapiens chromosome 19 clone CTC-258N23, complete sequence
          Length = 201939

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctgacagctgttacaactcc 67
             ||||||||||||||||||||
Sbjct: 36197 ctgacagctgttacaactcc 36216
to top
>gb|AY780432.1| Norovirus Hu/GII/Brisbane/01/2004/AU RNA-dependent RNA polymerase
           gene gene, partial cds
          Length = 242

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 58  acctgagccaaatgtggttctggg 35
to top
>dbj|AB240190.1| Norovirus Hu/NV/Hokkaido/332/2005/JP genes for RNA dependent RNA
           polymerase, capsid protein, partial cds
          Length = 1055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 81  acctgagccaaatgtggttctggg 58
to top
>dbj|AB240189.1| Norovirus Hu/NV/Hokkaido/322/2005/JP genes for RNA dependent RNA
           polymerase, capsid protein, partial cds
          Length = 1055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 81  acctgagccaaatgtggttctggg 58
to top
>dbj|AB240186.1| Norovirus Hu/NV/Hokkaido/300/2005/JP genes for RNA dependent RNA
           polymerase, capsid protein, partial cds
          Length = 1055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 81  acctgagccaaatgtggttctggg 58
to top
>dbj|AB240185.1| Norovirus Hu/NV/Hokkaido/286/2005/JP genes for RNA dependent RNA
           polymerase, capsid protein, partial cds
          Length = 1055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 81  acctgagccaaatgtggttctggg 58
to top
>dbj|AB240184.1| Norovirus Hu/NV/Hokkaido/284/2004/JP genes for RNA dependent RNA
           polymerase, capsid protein, partial cds
          Length = 1055

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 81  acctgagccaaatgtggttctggg 58
to top
>gb|AC090423.11| Homo sapiens Xp BAC RP11-86G5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104901

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   tttggtacactagacctgag 553
             ||||||||||||||||||||
Sbjct: 60498 tttggtacactagacctgag 60479
to top
>gb|AC093309.2| Homo sapiens chromosome 5 clone RP11-97P23, complete sequence
          Length = 169422

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    cagcaaaagatagattgatg 468
              ||||||||||||||||||||
Sbjct: 169326 cagcaaaagatagattgatg 169345
to top
>gb|DQ078801.2| Norovirus Hu/GII.4/Hunter 532D/04O/AU ORF1 and capsid protein
           genes, partial cds
          Length = 1882

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 911 acctgagccaaatgtggttctggg 888
to top
>gb|DQ351906.1| Norovirus Hu/0672HA/2004/NL RNA polymerase gene, partial cds
          Length = 195

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 93  acctgagccaaatgtggttctggg 70
to top
>gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6, complete sequence
          Length = 191557

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   cagcaaaagatagattgatg 468
             ||||||||||||||||||||
Sbjct: 17682 cagcaaaagatagattgatg 17701
to top
>gb|AY884188.1| Cochliobolus heterostrophus nonribosomal peptide synthetase 3 (NPS3)
            gene, complete cds
          Length = 17477

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  gtggaagaagcagccttcca 246
            ||||||||||||||||||||
Sbjct: 7637 gtggaagaagcagccttcca 7656
to top
>gb|AY673857.1| Norovirus Hu/CN2887/1998/US RNA polymerase gene, partial cds
          Length = 274

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 75  acctgagccaaatgtggttctggg 52
to top
>gb|AY900231.1| Norovirus Hu/GII.4/2004/NL RNA-dependent RNA polymerase gene,
           partial cds
          Length = 259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 64  acctgagccaaatgtggttctggg 41
to top
>gb|DQ288305.1| Norovirus Hu/GII/Yamaguchi/2005/JP RNA-dependent RNA polymerase
           gene, partial cds
          Length = 246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 52  acctgagccaaatgtggttctggg 29
to top
>gb|DQ288304.1| Norovirus Hu/GII/Shizuoka/2005/JP RNA-dependent RNA polymerase
           gene, partial cds
          Length = 246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 52  acctgagccaaatgtggttctggg 29
to top
>gb|DQ288303.1| Norovirus Hu/GII/Hokkaido/2004/JP RNA-dependent RNA polymerase
           gene, partial cds
          Length = 246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 52  acctgagccaaatgtggttctggg 29
to top
>gb|AF023268.1|AF023268 Homo sapiens clk2 kinase (CLK2), propin1, cote1, glucocerebrosidase
            (GBA), and metaxin genes, complete cds; metaxin
            pseudogene and glucocerebrosidase pseudogene; and
            thrombospondin3 (THBS3) gene, partial cds
          Length = 75270

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 511  acagaagccatttgggctgc 530
            ||||||||||||||||||||
Sbjct: 2656 acagaagccatttgggctgc 2675
to top
>dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36O22, TM0333b,
             complete sequence
          Length = 74925

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 561   tggatctgggaaatataagtctccagggtgaccttgccaagcca 604
             ||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 32529 tggatctgggagatgtaggtctccagtgtaaccttcccaagcca 32486
to top
>gb|AY739661.1| Norovirus Hu/mussels/Mos18I2004b/UK polymerase gene, partial cds
          Length = 195

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 547 acctgagccaaatgtggatctggg 570
           ||||||||||||||||| ||||||
Sbjct: 93  acctgagccaaatgtggttctggg 70


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,736,618
Number of Sequences: 3902068
Number of extensions: 4736618
Number of successful extensions: 74777
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74641
Number of HSP's gapped (non-prelim): 130
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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