ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17a17 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 238 bits (606), Expect = 1e-62 Identities = 118/131 (90%), Positives = 123/131 (93%) Frame = -1 Query: 563 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 384 GVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGS Sbjct: 460 GVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 519 Query: 383 RKWAPRFDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADA 204 RKWAPRFDYI TQQA V VD A IN+DLISNF SDPVHGAIEVCA+LRPTVDISV ADA Sbjct: 520 RKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADA 579 Query: 203 DFVRPELRQSA 171 DFVRPELRQS+ Sbjct: 580 DFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 234 bits (598), Expect = 1e-61 Identities = 116/129 (89%), Positives = 122/129 (94%) Frame = -1 Query: 563 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 384 GV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGS Sbjct: 450 GVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 509 Query: 383 RKWAPRFDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADA 204 RKWAPRFDYI TQQA V VD APINQDLISNF+SDPVHGAI+VCAELRPT+DISV A A Sbjct: 510 RKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAA 569 Query: 203 DFVRPELRQ 177 DFVRPELRQ Sbjct: 570 DFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 234 bits (596), Expect = 2e-61 Identities = 115/130 (88%), Positives = 123/130 (94%) Frame = -1 Query: 563 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 384 GVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSLNPFMHARGV+FMVDNCSTTARLGS Sbjct: 466 GVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGS 525 Query: 383 RKWAPRFDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADA 204 RKWAPRFDYI +QQA V VD APINQDLISNF+SDPVH AI VCA+LRP+VDISVTADA Sbjct: 526 RKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADA 585 Query: 203 DFVRPELRQS 174 DFVRPELRQ+ Sbjct: 586 DFVRPELRQA 595
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = -1 Query: 548 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 369 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 368 RF 363 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 9e-10 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = -1 Query: 548 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 369 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 368 RF 363 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = -1 Query: 548 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 369 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 368 RF 363 F Sbjct: 330 IF 331
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +3 Query: 213 RHRDVDGGPQLGAXLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGXDVVE 365 R+RD +G PQ+ A L+G + R VA + DG ++V R +G DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +1 Query: 112 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAXTSMAPWTGSDMKL 291 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 292 LMRSWLMGASLSTV 333 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 29.3 bits (64), Expect = 8.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 365 FDYIXTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 258 +DY+ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 135 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 239 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,727,767 Number of Sequences: 219361 Number of extensions: 1303413 Number of successful extensions: 3943 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3825 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3942 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
