ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) 31 0.67
2SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-su... 30 2.0
3B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-li... 29 2.6
4TERM_ADECC (Q65947) DNA terminal protein (Bellett protein) (pTP ... 29 3.3
5TERM_ADECR (Q96682) DNA terminal protein (Bellett protein) (pTP ... 29 3.3
6GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152 28 5.7

>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 507

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 28  HHRNTENXTHNATQTQPQPGHRVRRPGDTTFVLPQVSFSLFLPIP 162
           H R  +       Q Q Q G +   PG   F+ PQ     F+P+P
Sbjct: 424 HQRRMQEQQQQQQQQQGQQGQQQGYPGQQAFIPPQQGQPQFMPVP 468



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>SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 632

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 214 MMIVRRQQEKKEELGEPNYLTRFPAPAFGDRSFMNPHV 327
           M+++ R   KK   GE   +   PAPAF D     PH+
Sbjct: 540 MILLHRYYYKKANEGEETTVVPTPAPAFADLEQQVPHI 577



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>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)|
           (Solute carrier family 4 member 3)
          Length = 1227

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 31  HRNTENXTHNATQTQPQPGHRVRRPGDTT 117
           HR+T + TH+    +  P H++RRP  T+
Sbjct: 74  HRHTSHHTHHPLSARLPPPHKLRRPPPTS 102



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>TERM_ADECC (Q65947) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 608

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 136 SFSLFLPIPMIPL*GGVFRAKQTETGMMIVRRQQEKKEELGEPNYLTRFP 285
           + SL  P P  PL GG F  +  E G  +    + ++ E+ E  ++ R P
Sbjct: 292 ALSLPGPAPCTPLSGGAFELRPRENGRAVTEEMRRRRGEMIE-RFIDRLP 340



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>TERM_ADECR (Q96682) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 723

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 136 SFSLFLPIPMIPL*GGVFRAKQTETGMMIVRRQQEKKEELGEPNYLTRFP 285
           + SL  P P  PL GG F  +  E G  +    + ++ E+ E  ++ R P
Sbjct: 407 ALSLPGPAPCTPLSGGAFELRPRENGRAVTEEMRRRRGEMIE-RFIDRLP 455



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>GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152|
          Length = 511

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 235 QEKKEELGEPNYLTRFPAPAFGDRSFMNP 321
           Q + + + +P   T  P PAFGD S  NP
Sbjct: 438 QPQLDPVAQPQSNTETPIPAFGDESASNP 466


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,208,391
Number of Sequences: 219361
Number of extensions: 646476
Number of successful extensions: 1491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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