ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17a14 |
|---|---|
| Clone Library Name | barley_pub |
>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)| (Nepenthesin-II) Length = 438 Score = 74.3 bits (181), Expect = 2e-13 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Frame = -2 Query: 552 TAGTLVDSGTVITRLPATAYTALSSAF-DKVMLARGYKKAPGYSILDTCYDF-TGLSDVE 379 T G ++DSGT +T LP AY A++ AF D++ L + + G L TC+ + S V+ Sbjct: 309 TGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSG---LSTCFQQPSDGSTVQ 365 Query: 378 LPTVSLVFQGGACLDVDVSGIVYAISEAQVCLAFASNGDDESVAIVGNTQQKTYGVLYDL 199 +P +S+ F GG L++ I+ + +E +CLA S+ ++I GN QQ+ VLYDL Sbjct: 366 VPEISMQFDGGV-LNLGEQNILISPAEGVICLAMGSSSQ-LGISIFGNIQQQETQVLYDL 423 Query: 198 GKKTVGFAPGSC 163 V F P C Sbjct: 424 QNLAVSFVPTQC 435
>PEPC_CAVPO (Q64411) Gastricsin precursor (EC 3.4.23.3) (Pepsinogen C)| Length = 394 Score = 37.7 bits (86), Expect = 0.023 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Frame = -2 Query: 540 LVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSL 361 +VD+GT + +P+ + L A G SI D LPT++ Sbjct: 280 IVDTGTSLLTVPSDYLSTLVQAIGAEENEYGEYFVSCSSIQD------------LPTLTF 327 Query: 360 VFQGGACLDVDVSGIVYAISEAQVCLA-----FASNGDDESVAIVGNTQQKTYGVLYDLG 196 V G ++ +S Y +S C+ + S G E V I+G+ ++Y +YDL Sbjct: 328 VISG---VEFPLSPSAYILSGENYCMVGLESTYVSPGGGEPVWILGDVFLRSYYSVYDLA 384 Query: 195 KKTVGFA 175 VGFA Sbjct: 385 NNRVGFA 391
>YPS3_YEAST (Q12303) Aspartic proteinase yapsin-3 precursor (EC 3.4.23.-)| Length = 508 Score = 37.0 bits (84), Expect = 0.039 Identities = 34/122 (27%), Positives = 54/122 (44%) Frame = -2 Query: 540 LVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSL 361 L+DSGT +T LP+ A L+ + L Y K GY Y++T S +V+ Sbjct: 286 LLDSGTTLTYLPSQAVALLAKS-----LNASYSKTLGY------YEYTCPSSDNKTSVAF 334 Query: 360 VFQGGACLDVDVSGIVYAISEAQVCLAFASNGDDESVAIVGNTQQKTYGVLYDLGKKTVG 181 F GG ++ +S S LA + + AI+G++ + V+YDL + Sbjct: 335 DF-GGFRINAPLSDFTMQTSVGTCVLAIIPQAGN-ATAILGDSFLRNAYVVYDLDNYEIS 392 Query: 180 FA 175 A Sbjct: 393 LA 394
>EX7L_XANCP (Q8P8D9) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 446 Score = 33.9 bits (76), Expect = 0.33 Identities = 27/89 (30%), Positives = 42/89 (47%) Frame = +1 Query: 193 LAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHLRLADGVHDPGHVHVQARAALEHQRHR 372 L + ++HA RL LR+ R QA L+L + H++AR ++H R Sbjct: 288 LGQAMQHADRLALRLR----------ARSPQARLQLLQRRQEDAARHLRAR--MQHILER 335 Query: 373 RQLHIAQPREVVAGVQDRVPRRLLVPARQ 459 Q + + + AGVQ P+R L P +Q Sbjct: 336 LQARVQRAQ---AGVQSHSPQRHLAPLQQ 361
>FRS2_HUMAN (Q8WU20) Fibroblast growth factor receptor substrate 2 (FGFR| substrate 2) (Suc1-associated neurotrophic factor target 1) (SNT-1) (FGFR signalling adaptor SNT) Length = 511 Score = 32.3 bits (72), Expect = 0.96 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Frame = +1 Query: 232 RVPDDGDALVVAVGRERQAHLRLADGVHDPGHVHVQARAALEHQRHRRQLHI-------- 387 R P G A + +VG E L +A+ + H +V E +++R +H+ Sbjct: 165 RHPSVGSARLPSVGEESTHPLLVAE---EQVHTYVNTTGVQEERKNRTSVHVPLEARVSN 221 Query: 388 ---AQPREVVAGVQDRVPRRLLVP 450 + P+E + ++DR P+ LL P Sbjct: 222 AESSTPKEEPSSIEDRDPQILLEP 245
>STXB4_MOUSE (Q9WV89) Syntaxin-binding protein 4 (Syntaxin 4-interacting| protein) (Synip) Length = 557 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +2 Query: 194 LPRS*STPYVFCCVFPTMATLSSSPLDANARHTCASLMAYTIPDTSTSRHAPPWNTSDT 370 LP++ STP FP+ + + P H+ + + + DTS + AP W D+ Sbjct: 147 LPKTSSTPQTQDSTFPSCKAIQTKPEHDKTEHSPITSLDNSPADTSNADIAPAWTDDDS 205
>CARP_RHIMI (P00799) Mucorpepsin precursor (EC 3.4.23.23) (Mucor rennin)| Length = 430 Score = 32.0 bits (71), Expect = 1.3 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Frame = -2 Query: 537 VDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSLV 358 +D+GT +P++A +S K L + G+ + Y + T+S+V Sbjct: 305 IDTGTNFFIMPSSA----ASKIVKAALPDATETQQGWVVPCASYQNSK------STISIV 354 Query: 357 FQGGAC------LDVDVSGIVYAISEAQVCLAFASNGDDESVAIVGNTQQKTYGVLYDLG 196 Q + V VS ++ + ++ F D + IVGN + + +YD G Sbjct: 355 MQKSGSSSDTIEISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVNVYDFG 414 Query: 195 KKTVGFAP 172 +GFAP Sbjct: 415 NNRIGFAP 422
>CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.4.23.-)| (Aspartate protease) (ACP) Length = 419 Score = 31.6 bits (70), Expect = 1.6 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Frame = -2 Query: 546 GTLVDSGTVITRLPATAYTALSSAFDKVMLARGYKK---APGYSILDTCYDFTGLSDVEL 376 G +D+GT + LP++ +++ G + A S+ D F G + Sbjct: 303 GAAIDTGTSLITLPSSLAEIINAKIGATKSWSGQYQVDCAKRDSLPDLTLTFAGYNFTLT 362 Query: 375 PTVSLVFQGGACLDVDVSGIVYAISEAQVCLAFASNGDDESVAIVGNTQQKTYGVLYDLG 196 P ++ G+C+ V + F D +AIVG+ + Y +YDL Sbjct: 363 PYDYILEVSGSCISVFTP------------MDFPQPIGD--LAIVGDAFLRKYYSIYDLD 408 Query: 195 KKTVGFAP 172 K VG AP Sbjct: 409 KNAVGLAP 416
>PTRB_MORLA (Q59536) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)| Length = 690 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 79 TYVKLCIATDHLVDAA*LFNNHDEPVKSAGSGGEADGLLAEVVEHAVRLLLRV 237 T+ A HL+D N+ P K A GG A GLL V + L +V Sbjct: 506 TFTDFIAAAKHLID-----QNYTSPTKMAARGGSAGGLLVGAVANMAGELFKV 553
>PEPC_HUMAN (P20142) Gastricsin precursor (EC 3.4.23.3) (Pepsinogen C)| Length = 388 Score = 31.2 bits (69), Expect = 2.1 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Frame = -2 Query: 540 LVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSL 361 +VD+GT + +P +AL + A G ++ L C L P+++ Sbjct: 274 IVDTGTSLLTVPQQYMSAL-------LQATGAQEDEYGQFLVNCNSIQNL-----PSLTF 321 Query: 360 VFQGGACLDVDVSGIVYAISEAQVCLA-----FASNGDDESVAIVGNTQQKTYGVLYDLG 196 + G ++ + Y +S C + S+ + + + I+G+ ++Y +YDLG Sbjct: 322 IING---VEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLG 378 Query: 195 KKTVGFA 175 VGFA Sbjct: 379 NNRVGFA 385
>CARP_RHIPU (P09177) Mucorpepsin precursor (EC 3.4.23.23) (Mucor rennin)| Length = 427 Score = 30.8 bits (68), Expect = 2.8 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Frame = -2 Query: 372 TVSLVFQ-GGACLD-----VDVSGIVYAISEAQVCLAFASNGDDESVAIVGNTQQKTYGV 211 T SLV Q G+ D V +S ++ + ++ F D + IVGN + + Sbjct: 347 TFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVN 406 Query: 210 LYDLGKKTVGFAP 172 +YD GK +GFAP Sbjct: 407 VYDFGKNRIGFAP 419
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.8 bits (68), Expect = 2.8 Identities = 23/85 (27%), Positives = 36/85 (42%) Frame = +2 Query: 152 LSNQQDPGAKPTVFLPRS*STPYVFCCVFPTMATLSSSPLDANARHTCASLMAYTIPDTS 331 LS + P P+ S+P PT + L+SS H +++ T P TS Sbjct: 1388 LSTVSPTTSTPISSTPQPTSSP----TTLPTTSPLTSSATSPTTSHITSTVSPTTSPTTS 1443 Query: 332 TSRHAPPWNTSDTVGSSTSLSPVKS 406 T+ TS T ++++ SP S Sbjct: 1444 TTSPTTSPTTSTTSPTTSTTSPTPS 1468
>CARP_NEUCR (Q01294) Vacuolar protease A precursor (EC 3.4.23.-)| Length = 396 Score = 30.4 bits (67), Expect = 3.6 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Frame = -2 Query: 546 GTLVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTV 367 G ++D+GT + LP+ L++ G KK+ C + L DV Sbjct: 280 GVILDTGTSLIALPSQLAEMLNAQI-------GAKKSWNGQFTIDCGKKSSLEDVTFTLA 332 Query: 366 SLVFQGGACLDVDVSGIVYAISEAQVCLAFASNGDDES----VAIVGNTQQKTYGVLYDL 199 F G Y + + CL+ D + +AI+G+ + Y +YDL Sbjct: 333 GYNFTLGP--------EDYILEASGSCLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDL 384 Query: 198 GKKTVGFA 175 G TVG A Sbjct: 385 GADTVGIA 392
>PPB_SCHPO (O60109) Alkaline phosphatase (EC 3.1.3.1)| Length = 532 Score = 30.4 bits (67), Expect = 3.6 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -2 Query: 540 LVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSL 361 L+ G + + LP + Y + S D + L + +K G+ IL DF LS+ +LP + L Sbjct: 201 LLFGGGLCSFLPKSTYRSCRS--DNLDLLKYARKKEGFQILLNRTDFDELSNAQLPLLGL 258 Query: 360 VFQGGACLDVD 328 D+D Sbjct: 259 FSDYHLSYDID 269
>ALF_CORGL (P19537) Fructose-bisphosphate aldolase (EC 4.1.2.13)| Length = 343 Score = 30.0 bits (66), Expect = 4.8 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = +1 Query: 172 GGEADGLLAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHLRLA------DGVHDPGHVH 333 GGE DG+ A+ + L P+D + + A+G + LA GV+ PG+V Sbjct: 165 GGEEDGVEAKAGAN----LYTSPEDFEKTIDAIGTGEKGRYLLAATFGNVHGVYKPGNVK 220 Query: 334 VQARAALEHQRHRRQ 378 ++ LE Q+ R+ Sbjct: 221 LRPEVLLEGQQVARK 235
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 30.0 bits (66), Expect = 4.8 Identities = 27/100 (27%), Positives = 51/100 (51%) Frame = +2 Query: 242 TMATLSSSPLDANARHTCASLMAYTIPDTSTSRHAPPWNTSDTVGSSTSLSPVKS*QVSR 421 T ++ SSS L +++ T S + +P +STS +PP ++S+ SS S S S + Sbjct: 180 TFSSESSSSLISSSISTSVSTSSVYVPSSSTS--SPPSSSSELTSSSYSSSSSSS---TL 234 Query: 422 IEYPGAFLYPRANMTLSNAEDSAV*AVAGSRVITVPESTS 541 Y +F ++ + S++ S+ + + S T+ S+S Sbjct: 235 FSYSSSFSSSSSSSSSSSSSSSSS-SSSSSSYFTLSTSSS 273
>EX7L_XYLFA (Q9PFC3) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 444 Score = 29.6 bits (65), Expect = 6.2 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Frame = +1 Query: 193 LAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHL--RLADGVHDPGHVHVQARAALEHQR 366 L + ++ A +L LR+ + + + +RQA RL +H HV RA + + Sbjct: 287 LDQAIQRADQLGLRLQARNPEMHLRLLAQRQAEAGRRLEQCLH-----HVLDRAQGQLRN 341 Query: 367 HRRQLHIAQPREVVAGVQDRV 429 H +L+ PR+ +AG+Q + Sbjct: 342 HHTRLYALNPRQQIAGLQQHL 362
>PEPC_CALJA (Q9N2D3) Gastricsin precursor (EC 3.4.23.3) (Pepsinogen C)| Length = 388 Score = 29.3 bits (64), Expect = 8.1 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%) Frame = -2 Query: 540 LVDSGTVITRLPATAYTALSSAFDKVMLARGYKKAPGYSILDTCYDFTGLSDVELPTVSL 361 +VD+GT + +P +A + A G ++ L C L PT++ Sbjct: 274 IVDTGTSLLTVPQQYMSAF-------LEATGAQEDEYGQFLVNCDSIQNL-----PTLTF 321 Query: 360 VFQGGACLDVDVSGIVYAISEAQVCLA-----FASNGDDESVAIVGNTQQKTYGVLYDLG 196 + G ++ + Y +S C + S+ + + + I+G+ ++Y ++DLG Sbjct: 322 IING---VEFPLPPSSYILSNNGYCTVGVEPTYLSSQNSQPLWILGDVFLRSYYSVFDLG 378 Query: 195 KKTVGFA 175 VGFA Sbjct: 379 NNRVGFA 385
>EX7L_XYLFT (Q87AC5) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 444 Score = 29.3 bits (64), Expect = 8.1 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +1 Query: 193 LAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHL--RLADGVHDPGHVHVQARAALEHQR 366 L + ++ A +L LR+ + + + +RQA RL +H HV RA + + Sbjct: 287 LDQAIQRADQLGLRLQARNPEMHLRLLAQRQAEAGRRLQQCLH-----HVLDRAQGQLRN 341 Query: 367 HRRQLHIAQPREVVAGVQ 420 H +L+ PR+ +AG+Q Sbjct: 342 HHTRLYALNPRQQIAGLQ 359
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +1 Query: 175 GEADGLLAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHLRLADGV--HDPGH 327 GE G++ EVV A LL V D D ++V R + L DG+ DP H Sbjct: 118 GEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPH 170
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +1 Query: 175 GEADGLLAEVVEHAVRLLLRVPDDGDALVVAVGRERQAHLRLADGV--HDPGH 327 GE G++ EVV A LL V D D ++V R + L DG+ DP H Sbjct: 118 GEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPH 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,878,447 Number of Sequences: 219361 Number of extensions: 1320705 Number of successful extensions: 4279 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4270 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
