ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17a14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 1e-32 Identities = 243/299 (81%) Strand = Plus / Minus Query: 159 atcagcaggatccgggggcgaagccgacggtcttcttgccgaggtcgtagagcacgccgt 218 ||||||| | |||||||| ||||||||| |||||| |||| ||||||| |||||| Sbjct: 23970136 atcagcaagctccgggggagaagccgaccaccttcttcccgatgtcgtaggcgacgccga 23970077 Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 ||||||| |||||||||||||||||||| ||||| || |||| ||||| |||| Sbjct: 23970076 acgtcttgagctgcgtgttcccgacgatgccgacgtcgccgccgtcctcgttgccggcga 23970017 Query: 279 acgccaggcacacctgcgcctcgctgatggcgtacacgatcccggacacgtccacgtcca 338 |||| ||||||||||||| | |||| | | ||||| |||||| ||| |||| ||||||| Sbjct: 23970016 acgcgaggcacacctgcgacgcgctcaccgtgtacatgatccccgacgcgtcgacgtcca 23969957 Query: 339 ggcacgcgccgccctggaacaccagcgacaccgtcggcagctccacatcgctcagccccg 398 | ||||||||||||||||| ||||||||||||||| | | |||| | ||||| ||| | Sbjct: 23969956 gcgccgcgccgccctggaacagcagcgacaccgtcgggatcgccacctggctcatcccgg 23969897 Query: 399 tgaagtcgtagcaggtgtccaggatcgagtaccccggcgccttcttgtacccgcgcgcc 457 ||||||||||||| |||||||| | ||| | ||| ||||||| |||||||||||||| Sbjct: 23969896 tgaagtcgtagcacgtgtccagcagcgacaccgccgccgccttcctgtacccgcgcgcc 23969838 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 484 cagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||| || ||| |||||||||||||||||||||||||||||| Sbjct: 11330478 cagcgccgtgtacacgttcggcggcagccgcgtgatcaccgtgccggagtc 11330528 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 493 gtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| |||||||| |||| |||||| |||||||||||||| Sbjct: 11426868 gtaggccgtcgccgggagccccgtgatgaccgtgccggagtc 11426827 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 23969783 cgcgtgatcaccgtgccggagtc 23969761 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 1153961 cgcgccgccgtcgaacaccagcgacaccgccggca 1153927 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 1137415 cgcgccgccgtcgaacaccagcgacaccgccggca 1137381 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 1063114 gtgaagtcgtagcaggtgtcgaggat 1063139 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccga 242 |||||| | ||||| | |||||| ||||||||||||||||| Sbjct: 11330211 gtcgtacaccacgctgaacgtctgctgctgcgtgttcccga 11330251 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 1153904 gaagtcgtagcaggtgtccag 1153884 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 1137358 gaagtcgtagcaggtgtccag 1137338
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 149 bits (75), Expect = 1e-32 Identities = 243/299 (81%) Strand = Plus / Minus Query: 159 atcagcaggatccgggggcgaagccgacggtcttcttgccgaggtcgtagagcacgccgt 218 ||||||| | |||||||| ||||||||| |||||| |||| ||||||| |||||| Sbjct: 99747 atcagcaagctccgggggagaagccgaccaccttcttcccgatgtcgtaggcgacgccga 99688 Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 ||||||| |||||||||||||||||||| ||||| || |||| ||||| |||| Sbjct: 99687 acgtcttgagctgcgtgttcccgacgatgccgacgtcgccgccgtcctcgttgccggcga 99628 Query: 279 acgccaggcacacctgcgcctcgctgatggcgtacacgatcccggacacgtccacgtcca 338 |||| ||||||||||||| | |||| | | ||||| |||||| ||| |||| ||||||| Sbjct: 99627 acgcgaggcacacctgcgacgcgctcaccgtgtacatgatccccgacgcgtcgacgtcca 99568 Query: 339 ggcacgcgccgccctggaacaccagcgacaccgtcggcagctccacatcgctcagccccg 398 | ||||||||||||||||| ||||||||||||||| | | |||| | ||||| ||| | Sbjct: 99567 gcgccgcgccgccctggaacagcagcgacaccgtcgggatcgccacctggctcatcccgg 99508 Query: 399 tgaagtcgtagcaggtgtccaggatcgagtaccccggcgccttcttgtacccgcgcgcc 457 ||||||||||||| |||||||| | ||| | ||| ||||||| |||||||||||||| Sbjct: 99507 tgaagtcgtagcacgtgtccagcagcgacaccgccgccgccttcctgtacccgcgcgcc 99449 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 99394 cgcgtgatcaccgtgccggagtc 99372
>dbj|AK066754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074G14, full insert sequence Length = 1797 Score = 141 bits (71), Expect = 3e-30 Identities = 242/299 (80%) Strand = Plus / Minus Query: 159 atcagcaggatccgggggcgaagccgacggtcttcttgccgaggtcgtagagcacgccgt 218 ||||||| | |||||||| ||||||||| |||||| |||| ||||||| |||||| Sbjct: 1634 atcagcaagctccgggggagaagccgaccaccttcttcccgatgtcgtaggcgacgccga 1575 Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 ||||||| |||||||||||||||||||| ||||| || |||| ||||| |||| Sbjct: 1574 acgtcttgagctgcgtgttcccgacgatgccgacgtcgccgccgtcctcgttgccggcga 1515 Query: 279 acgccaggcacacctgcgcctcgctgatggcgtacacgatcccggacacgtccacgtcca 338 |||| ||||||||||||| | |||| | | ||||| |||||| ||| |||| ||||||| Sbjct: 1514 acgcgaggcacacctgcgacgcgctcaccgtgtacatgatccccgacgcgtcgacgtcca 1455 Query: 339 ggcacgcgccgccctggaacaccagcgacaccgtcggcagctccacatcgctcagccccg 398 | ||||||||||||||||| ||||||||||||||| | | || | | ||||| ||| | Sbjct: 1454 gcgccgcgccgccctggaacagcagcgacaccgtcgggatcgccgcctggctcatcccgg 1395 Query: 399 tgaagtcgtagcaggtgtccaggatcgagtaccccggcgccttcttgtacccgcgcgcc 457 ||||||||||||| |||||||| | ||| | ||| ||||||| |||||||||||||| Sbjct: 1394 tgaagtcgtagcacgtgtccagcagcgacaccgccgccgccttcctgtacccgcgcgcc 1336 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 1281 cgcgtgatcaccgtgccggagtc 1259
>ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || | || ||||||||||||||||||||||||||| Sbjct: 1122 gaacgccgacgacagcgccgcgtacgccgccggcggcagccgcgtgatcaccgtgccgga 1063 Query: 532 gtccaccagcgtcccggc 549 ||||||||||| |||||| Sbjct: 1062 gtccaccagcgacccggc 1045
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || | || ||||||||||||||||||||||||||| Sbjct: 24015761 gaacgccgacgacagcgccgcgtacgccgccggcggcagccgcgtgatcaccgtgccgga 24015702 Query: 532 gtccaccagcgtcccggc 549 ||||||||||| |||||| Sbjct: 24015701 gtccaccagcgacccggc 24015684
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || | || ||||||||||||||||||||||||||| Sbjct: 130283 gaacgccgacgacagcgccgcgtacgccgccggcggcagccgcgtgatcaccgtgccgga 130224 Query: 532 gtccaccagcgtcccggc 549 ||||||||||| |||||| Sbjct: 130223 gtccaccagcgacccggc 130206
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 8592 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 8533 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 8532 acgccaggcacgcctgcg 8515 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 8302 gtgatcaccgtgccggagtc 8283
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 18480586 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 18480527 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 18480526 acgccaggcacgcctgcg 18480509 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 18469127 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 18469068 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 18469067 acgccaggcacgcctgcg 18469050 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ttcttgccgaggtcgtagagcacg 214 |||||| ||||||||||||||||| Sbjct: 21794746 ttcttggcgaggtcgtagagcacg 21794769 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 18480296 gtgatcaccgtgccggagtc 18480277 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 18468837 gtgatcaccgtgccggagtc 18468818
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 142460 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 142401 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 142400 acgccaggcacgcctgcg 142383 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 131001 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 130942 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 130941 acgccaggcacgcctgcg 130924 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 142170 gtgatcaccgtgccggagtc 142151 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 130711 gtgatcaccgtgccggagtc 130692
>dbj|AK108029.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B01, full insert sequence Length = 1723 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 458 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 517 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 518 acgccaggcacgcctgcg 535 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 gtgatcaccgtgccggagtc 534 |||||||||||||||||||| Sbjct: 748 gtgatcaccgtgccggagtc 767
>dbj|AK105666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H10, full insert sequence Length = 1608 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 219 acgtcttctgctgcgtgttcccgacgatggcgacgctctcgtcgtcgccgttggacgcga 278 |||||||||||||||||||||||| |||||||| | | ||||||| |||||| ||||| Sbjct: 1483 acgtcttctgctgcgtgttcccgaggatggcgatggacgagtcgtcggcgttgggcgcga 1424 Query: 279 acgccaggcacacctgcg 296 ||||||||||| |||||| Sbjct: 1423 acgccaggcacgcctgcg 1406
>ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA Length = 1716 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 576 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 635 Query: 532 gtccacca 539 |||||||| Sbjct: 636 gtccacca 643
>ref|XM_467513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 1141 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 1082 Query: 532 gtccacca 539 |||||||| Sbjct: 1081 gtccacca 1074
>ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA Length = 1737 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 1147 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 1088 Query: 532 gtccacca 539 |||||||| Sbjct: 1087 gtccacca 1080
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 29911571 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 29911630 Query: 532 gtccacca 539 |||||||| Sbjct: 29911631 gtccacca 29911638 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 29934175 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 29934121 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggatc 424 ||||||||||||||||||||||||||| Sbjct: 29909063 gtgaagtcgtagcaggtgtccaggatc 29909037 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 29933890 cggcaggcgcgtgatcaccgtgccggagtc 29933861 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgcc 528 |||||||||||||| ||||||||| Sbjct: 29908956 cggcagccgcgtgaccaccgtgcc 29908933
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 11847 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 11906 Query: 532 gtccacca 539 |||||||| Sbjct: 11907 gtccacca 11914 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 34451 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 34397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggatc 424 ||||||||||||||||||||||||||| Sbjct: 9339 gtgaagtcgtagcaggtgtccaggatc 9313 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 34166 cggcaggcgcgtgatcaccgtgccggagtc 34137 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgcc 528 |||||||||||||| ||||||||| Sbjct: 9232 cggcagccgcgtgaccaccgtgcc 9209
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 68536 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 68595 Query: 532 gtccacca 539 |||||||| Sbjct: 68596 gtccacca 68603 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 91140 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 91086 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggatc 424 ||||||||||||||||||||||||||| Sbjct: 66028 gtgaagtcgtagcaggtgtccaggatc 66002 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 90855 cggcaggcgcgtgatcaccgtgccggagtc 90826 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgcc 528 |||||||||||||| ||||||||| Sbjct: 65921 cggcagccgcgtgaccaccgtgcc 65898
>dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G11, full insert sequence Length = 1716 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 1141 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 1082 Query: 532 gtccacca 539 |||||||| Sbjct: 1081 gtccacca 1074
>dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full insert sequence Length = 1736 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 472 gaacgccgaggacagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccgga 531 ||||||||| |||||||| | ||| || |||| ||||||||||||||| | ||||||||| Sbjct: 1146 gaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccgga 1087 Query: 532 gtccacca 539 |||||||| Sbjct: 1086 gtccacca 1079
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 4524046 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 4524008
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 4524161 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 4524123
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 129338 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 129300
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 484 cagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||| || ||| |||||||||||||||||||||||||||||| Sbjct: 18187 cagcgccgtgtacacgttcggcggcagccgcgtgatcaccgtgccggagtc 18237 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 493 gtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| |||||||| |||| |||||| |||||||||||||| Sbjct: 114577 gtaggccgtcgccgggagccccgtgatgaccgtgccggagtc 114536 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccga 242 |||||| | ||||| | |||||| ||||||||||||||||| Sbjct: 17920 gtcgtacaccacgctgaacgtctgctgctgcgtgttcccga 17960
>dbj|AB122090.1| Oryza sativa (japonica cultivar-group) Radc1 gene for Radc1, complete cds Length = 3000 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 2218 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 2180
>dbj|AK120604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150B18, full insert sequence Length = 1871 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 484 cagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||| || ||| |||||||||||||||||||||||||||||| Sbjct: 1151 cagcgccgtgtacacgttcggcggcagccgcgtgatcaccgtgccggagtc 1101 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccga 242 |||||| | ||||| | |||||| ||||||||||||||||| Sbjct: 1418 gtcgtacaccacgctgaacgtctgctgctgcgtgttcccga 1378
>dbj|AK120050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A21, full insert sequence Length = 1693 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1013 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 975
>dbj|AK102614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099D18, full insert sequence Length = 1868 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 484 cagcgcggtgtaggcggtcgccggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||| || ||| |||||||||||||||||||||||||||||| Sbjct: 1151 cagcgccgtgtacacgttcggcggcagccgcgtgatcaccgtgccggagtc 1101 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccga 242 |||||| | ||||| | |||||| ||||||||||||||||| Sbjct: 1418 gtcgtacaccacgctgaacgtctgctgctgcgtgttcccga 1378
>dbj|AK062232.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D08, full insert sequence Length = 1742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 511 ccgcgtgatcaccgtgccggagtccaccagcgtcccggc 549 ||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1024 ccgcgtgatcaccgtgccggagtccaccaccgtgccggc 986
>ref|XM_506945.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.22-2 patrial mRNA Length = 1454 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 83 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 137 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 368 cggcaggcgcgtgatcaccgtgccggagtc 397
>ref|XM_467512.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1428 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggatc 424 ||||||||||||||||||||||||||| Sbjct: 1211 gtgaagtcgtagcaggtgtccaggatc 1185 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgcc 528 |||||||||||||| ||||||||| Sbjct: 1104 cggcagccgcgtgaccaccgtgcc 1081
>ref|XM_467517.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1610 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1388 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1334 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1103 cggcaggcgcgtgatcaccgtgccggagtc 1074
>ref|XM_467516.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1973 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1388 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1334 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1103 cggcaggcgcgtgatcaccgtgccggagtc 1074
>dbj|AK099781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095M09, full insert sequence Length = 2021 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1389 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1335 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1104 cggcaggcgcgtgatcaccgtgccggagtc 1075
>dbj|AK108932.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A08, full insert sequence Length = 1066 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggatc 424 ||||||||||||||||||||||||||| Sbjct: 302 gtgaagtcgtagcaggtgtccaggatc 276 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgcc 528 |||||||||||||| ||||||||| Sbjct: 195 cggcagccgcgtgaccaccgtgcc 172
>dbj|AK108039.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C12, full insert sequence Length = 1454 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 83 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 137 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 368 cggcaggcgcgtgatcaccgtgccggagtc 397
>dbj|AK072228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I21, full insert sequence Length = 2463 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1932 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1878 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1647 cggcaggcgcgtgatcaccgtgccggagtc 1618
>dbj|AK061628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D10, full insert sequence Length = 1973 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1388 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1334 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1103 cggcaggcgcgtgatcaccgtgccggagtc 1074
>dbj|AK061307.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-A02, full insert sequence Length = 1610 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 202 gtcgtagagcacgccgtacgtcttctgctgcgtgttcccgacgatggcgacgctc 256 |||||||| |||| | |||||| ||||||||||||||||| ||||||| ||||| Sbjct: 1388 gtcgtagacgacgctgaacgtctgctgctgcgtgttcccgatgatggcggcgctc 1334 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 505 cggcagccgcgtgatcaccgtgccggagtc 534 |||||| ||||||||||||||||||||||| Sbjct: 1103 cggcaggcgcgtgatcaccgtgccggagtc 1074
>ref|XM_481142.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 1208 cgcgtgatcaccgtgccggagtc 1186
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 10184163 cgcgtgatcaccgtgccggagtc 10184185
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 130184 cgcgccgccgtcgaacaccagcgacaccgccggca 130150 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 113638 cgcgccgccgtcgaacaccagcgacaccgccggca 113604 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 39337 gtgaagtcgtagcaggtgtcgaggat 39362 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 130127 gaagtcgtagcaggtgtccag 130107 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 113581 gaagtcgtagcaggtgtccag 113561
>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0542E10 Length = 146196 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 5914 cgcgccgccgtcgaacaccagcgacaccgccggca 5880 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 5857 gaagtcgtagcaggtgtccag 5837
>gb|AE005000.1| Halobacterium sp. NRC-1 section 31 of 170 of the complete genome Length = 11487 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 279 acgccaggcacacctgcgcctcgctga 305 ||||||||| ||||||||||||||||| Sbjct: 6819 acgccaggctcacctgcgcctcgctga 6845
>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0023I13 Length = 165911 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 143509 cgcgtgatcaccgtgccggagtc 143531
>dbj|AK105097.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B11, full insert sequence Length = 2569 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 512 cgcgtgatcaccgtgccggagtc 534 ||||||||||||||||||||||| Sbjct: 2098 cgcgtgatcaccgtgccggagtc 2076
>dbj|AK058425.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E01, full insert sequence Length = 1389 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 cgcgccgccctggaacaccagcgacaccgtcggca 377 ||||||||| | ||||||||||||||||| ||||| Sbjct: 1174 cgcgccgccgtcgaacaccagcgacaccgccggca 1140 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 gaagtcgtagcaggtgtccag 420 ||||||||||||||||||||| Sbjct: 1117 gaagtcgtagcaggtgtccag 1097
>ref|XM_550548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1886 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 1336 gtgaagtcgtagcaggtgtcgaggat 1311
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 492 tgtaggcggtcgccggcagccgcgtg 517 |||||||||||| ||||||||||||| Sbjct: 88202 tgtaggcggtcggcggcagccgcgtg 88227
>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J13 Length = 152837 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 125987 gtgaagtcgtagcaggtgtcgaggat 126012
>dbj|AK104685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C01, full insert sequence Length = 1886 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 1336 gtgaagtcgtagcaggtgtcgaggat 1311
>dbj|AK066409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067G18, full insert sequence Length = 1900 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 398 gtgaagtcgtagcaggtgtccaggat 423 |||||||||||||||||||| ||||| Sbjct: 1328 gtgaagtcgtagcaggtgtcgaggat 1303
>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 201304 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 acatatgtaaagttatgtata 99 ||||||||||||||||||||| Sbjct: 116410 acatatgtaaagttatgtata 116390
>emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on chromosome 13 Contains part of a novel gene (including KIAA0865), possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and a novel gene, complete sequence Length = 170276 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ccctggaacaccagcgacacc 370 ||||||||||||||||||||| Sbjct: 147685 ccctggaacaccagcgacacc 147705
>ref|XM_315551.2| Anopheles gambiae str. PEST ENSANGP00000017759 (ENSANGG00000015270), partial mRNA Length = 3897 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 tcttcttgccgaggtcgtaga 209 ||||||||||||||||||||| Sbjct: 3169 tcttcttgccgaggtcgtaga 3149
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 acatatgtaaagttatgtata 99 ||||||||||||||||||||| Sbjct: 90293 acatatgtaaagttatgtata 90273
>gb|AC074314.29| 433m13, complete sequence Length = 209644 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 acatatgtaaagttatgtata 99 ||||||||||||||||||||| Sbjct: 207126 acatatgtaaagttatgtata 207106
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 gccgccctggaacaccagcga 366 ||||||||||||||||||||| Sbjct: 385439 gccgccctggaacaccagcga 385459
>dbj|D45066.1| Cucurbita maxima mRNA for AOBP (ascorbate oxidase promoter-binding protein), complete cds Length = 1485 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 tcacatatgtaaagttatgta 97 ||||||||||||||||||||| Sbjct: 1419 tcacatatgtaaagttatgta 1399
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ttcttgccgaggtcgtagagcacg 214 |||||| ||||||||||||||||| Sbjct: 140766 ttcttggcgaggtcgtagagcacg 140789
>gb|AY023094.1| Oryza sativa microsatellite MRG5419 containing (GAG)X8, closest to marker L176, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tcgtcgtcgccgttggacgcgaac 280 ||||||||||||| |||||||||| Sbjct: 150 tcgtcgtcgccgtcggacgcgaac 127
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gccgaggtcgtagagcacgc 215 |||||||||||||||||||| Sbjct: 5178974 gccgaggtcgtagagcacgc 5178955
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01, complete sequence Length = 118799 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tcgtcgtcgccgttggacgcgaac 280 ||||||||||||| |||||||||| Sbjct: 85082 tcgtcgtcgccgtcggacgcgaac 85059
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ttcttgccgaggtcgtagagcacg 214 |||||| ||||||||||||||||| Sbjct: 180 ttcttggcgaggtcgtagagcacg 203
>gb|AE009147.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 173 of 256 of the complete sequence Length = 10298 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgacgctctcgtcgtcgccg 268 |||||||||||||||||||| Sbjct: 1948 cgacgctctcgtcgtcgccg 1929
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 gtgtaggcggtcgccggcagccgc 514 |||||||||||||||||| ||||| Sbjct: 60117 gtgtaggcggtcgccggccgccgc 60094
>gb|AY129338.1| Mycobacteriophage Omega, complete sequence Length = 110865 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcacacctgcgcctcgctg 304 |||||||||||||||||||| Sbjct: 54386 ggcacacctgcgcctcgctg 54405
>emb|AJ224513.1|HVI224513 Heliothis virescens mRNA for GABA-gated chloride channel Length = 1618 Score = 40.1 bits (20), Expect = 7.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 503 gccggcagccgcgtgatcaccgtgccgg 530 |||||||||||||| ||||||||||||| Sbjct: 62 gccggcagccgcgt-atcaccgtgccgg 36
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgacgctctcgtcgtcgccg 268 |||||||||||||||||||| Sbjct: 1912064 cgacgctctcgtcgtcgccg 1912045
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tcgtcgtcgccgttggacgcgaac 280 ||||||||||||| |||||||||| Sbjct: 24803099 tcgtcgtcgccgtcggacgcgaac 24803076
>gb|AC007770.5|AC007770 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR03J13, complete sequence Length = 179260 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acatatgtaaagttatgtat 98 |||||||||||||||||||| Sbjct: 65449 acatatgtaaagttatgtat 65468
>gb|AC154003.4| Mus musculus 6 BAC RP24-92L16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200703 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 cgtcttctgctgcgtgttcccgac 243 ||||||||||| |||||||||||| Sbjct: 46333 cgtcttctgctccgtgttcccgac 46356
>gb|AE004544.1| Pseudomonas aeruginosa PAO1, section 105 of 529 of the complete genome Length = 11478 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 352 ctggaacaccagcgacaccgtcggcagctcca 383 |||||||||| |||||| || ||||||||||| Sbjct: 2457 ctggaacacccgcgacagcgccggcagctcca 2488
>gb|AE004512.1| Pseudomonas aeruginosa PAO1, section 73 of 529 of the complete genome Length = 10081 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gccgaggtcgtagagcacgc 215 |||||||||||||||||||| Sbjct: 5191 gccgaggtcgtagagcacgc 5210
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 tcgccggcagccgcgtgatc 520 |||||||||||||||||||| Sbjct: 6623553 tcgccggcagccgcgtgatc 6623572
>dbj|AK067434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F19, full insert sequence Length = 3860 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tcgtcgtcgccgttggacgcgaac 280 ||||||||||||| |||||||||| Sbjct: 291 tcgtcgtcgccgtcggacgcgaac 268
>gb|AE003687.3| Drosophila melanogaster chromosome 3R, section 25 of 118 of the complete sequence Length = 260168 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acatatgtaaagttatgtat 98 |||||||||||||||||||| Sbjct: 118625 acatatgtaaagttatgtat 118644
>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08, complete sequence Length = 148274 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 tcgtcgtcgccgttggacgcgaac 280 ||||||||||||| |||||||||| Sbjct: 129598 tcgtcgtcgccgtcggacgcgaac 129575
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 ggaacaccagcgacaccgtcggca 377 ||||||||||| |||||||||||| Sbjct: 3249318 ggaacaccagccacaccgtcggca 3249341
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 ggaacaccagcgacaccgtcggca 377 ||||||||||| |||||||||||| Sbjct: 3179362 ggaacaccagccacaccgtcggca 3179385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,152,141 Number of Sequences: 3902068 Number of extensions: 3152141 Number of successful extensions: 61163 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60171 Number of HSP's gapped (non-prelim): 975 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
