ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y13848.1|HVAGALACB Hordeum vulgare mRNA for alpha-galactosid... 769 0.0
2gb|AY105996.1| Zea mays PCO071270 mRNA sequence 127 3e-26
3ref|NM_197143.1| Oryza sativa (japonica cultivar-group) putative... 119 7e-24
4dbj|AK068613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
5dbj|AK068374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
6dbj|AK059912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
7dbj|AB039671.1| Oryza sativa (japonica cultivar-group) mRNA for ... 119 7e-24
8dbj|AK058373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
9gb|BT016264.1| Zea mays clone Contig97 mRNA sequence 113 4e-22
10gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 70 6e-09
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
13ref|NM_001012451.1| Mus musculus ankyrin repeat domain 6 (Ankrd6... 42 1.4
14ref|NM_001012450.1| Mus musculus ankyrin repeat domain 6 (Ankrd6... 42 1.4
15ref|NM_080471.3| Mus musculus ankyrin repeat domain 6 (Ankrd6), ... 42 1.4
16dbj|AK133551.1| Mus musculus adult male pituitary gland cDNA, RI... 42 1.4
17dbj|AK173070.1| Mus musculus mRNA for mKIAA0957 protein 42 1.4
18emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on ch... 42 1.4
19gb|BC065177.1| Mus musculus ankyrin repeat domain 6, transcript ... 42 1.4
20gb|AF426384.1| Danio rerio deltaD protein gene, complete cds 40 5.4
21emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.4
22emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ... 40 5.4
23emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, B... 40 5.4
24gb|M27787.1|SYNECOANGA Synthetic Leu-30 angiogenin gene, 3' end 40 5.4

>emb|Y13848.1|HVAGALACB Hordeum vulgare mRNA for alpha-galactosidase b (partial)
          Length = 805

 Score =  769 bits (388), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   ccgttacaacttgcaaacttcanaaacacatttcacggcactttacatacagctacagct 68
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 775 ccgttacaacttgcaaacttcagaaacacatttcacggcactttacatacagctacagct 716

                                                                       
Query: 69  tatttctaacctcatgtgaccgaatcgcatttctcaattcatctcagctcggctctatcg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tatttctaacctcatgtgaccgaatcgcatttctcaattcatctcagctcggctctatcg 656

                                                                       
Query: 129 atccccttccttgcaaaccccttcccctgaatctacagttactttggcgtcaggatgtac 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atccccttccttgcaaaccccttcccctgaatctacagttactttggcgtcaggatgtac 596

                                                                       
Query: 189 atcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgacgag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgacgag 536

                                                                       
Query: 249 tgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgaccag 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgaccag 476

                                                                       
Query: 309 tgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctgttg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctgttg 416

                                              
Query: 369 ccgctgagcggtccggcccagacctccaaaccgcc 403
           ||||||||| |||||||||||||||||||||||||
Sbjct: 415 ccgctgagcagtccggcccagacctccaaaccgcc 381



to top

>gb|AY105996.1| Zea mays PCO071270 mRNA sequence
          Length = 1320

 Score =  127 bits (64), Expect = 3e-26
 Identities = 175/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            |||||||||||||| |||||   ||| || || ||||| || || ||||| |||||||||
Sbjct: 1005 tacatcttgcagtcgtgaggtggcaccgaagctgatagctggccttgagccgagaacgac 946

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||||||||| || || |  | ||| |  |  ||||||| | | |||
Sbjct: 945  gagtgcgcccatagatcgcgagcagtgacagcagtggaagaagcgagcccgatgctcgac 886

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||||||||||||||||||||| ||||||| |||||| ||||| || ||||| |||
Sbjct: 885  cactgtgcggtgatggttgcctggtatccctgccggttccagagaaccacggccttcctg 826

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  ||||||||| || ||||| ||||||||
Sbjct: 825  ttgttgctgagcggcccagcccaaacctccaa 794



to top

>ref|NM_197143.1| Oryza sativa (japonica cultivar-group) putative alpha-galactosidase
            preproprotein (OSJNBa0041P03.8), mRNA
          Length = 1582

 Score =  119 bits (60), Expect = 7e-24
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 1277 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 1218

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| |||
Sbjct: 1217 gagtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgac 1158

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||| |||||||||||||||||   |||||||||||| || || || ||||| |||
Sbjct: 1157 caatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctg 1098

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  |||||| || |||||||| ||||||||
Sbjct: 1097 ttgttgctgagtggcccggcccaaacctccaa 1066



to top

>dbj|AK068613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H12, full
            insert sequence
          Length = 1641

 Score =  119 bits (60), Expect = 7e-24
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 1215 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 1156

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| |||
Sbjct: 1155 gagtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgac 1096

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||| |||||||||||||||||   |||||||||||| || || || ||||| |||
Sbjct: 1095 caatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctg 1036

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  |||||| || |||||||| ||||||||
Sbjct: 1035 ttgttgctgagtggcccggcccaaacctccaa 1004



to top

>dbj|AK068374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151E12, full
            insert sequence
          Length = 1563

 Score =  119 bits (60), Expect = 7e-24
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 1290 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 1231

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| |||
Sbjct: 1230 gagtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgac 1171

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||| |||||||||||||||||   |||||||||||| || || || ||||| |||
Sbjct: 1170 caatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctg 1111

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  |||||| || |||||||| ||||||||
Sbjct: 1110 ttgttgctgagtggcccggcccaaacctccaa 1079



to top

>dbj|AK059912.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D08, full
            insert sequence
          Length = 1369

 Score =  119 bits (60), Expect = 7e-24
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 1093 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 1034

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| |||
Sbjct: 1033 gagtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgac 974

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||| |||||||||||||||||   |||||||||||| || || || ||||| |||
Sbjct: 973  caatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctg 914

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  |||||| || |||||||| ||||||||
Sbjct: 913  ttgttgctgagtggcccggcccaaacctccaa 882



to top

>dbj|AB039671.1| Oryza sativa (japonica cultivar-group) mRNA for alpha-galactosidase,
            complete cds
          Length = 1410

 Score =  119 bits (60), Expect = 7e-24
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 186  tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
            ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 1275 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 1216

                                                                        
Query: 246  gagtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgac 305
            ||||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| |||
Sbjct: 1215 gagtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgac 1156

                                                                        
Query: 306  cagtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctg 365
            || ||||| |||||||||||||||||   |||||||||||| || || || ||||| |||
Sbjct: 1155 caatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctg 1096

                                            
Query: 366  ttgccgctgagcggtccggcccagacctccaa 397
            |||  |||||| || |||||||| ||||||||
Sbjct: 1095 ttgttgctgagtggcccggcccaaacctccaa 1064



to top

>dbj|AK058373.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G08, full
           insert sequence
          Length = 682

 Score =  117 bits (59), Expect = 3e-23
 Identities = 173/211 (81%)
 Strand = Plus / Minus

                                                                       
Query: 187 acatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgacg 246
           |||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| |
Sbjct: 369 acatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaag 310

                                                                       
Query: 247 agtgcgcccatagatcgcgagcggtcacggacgcggatgccggaagcccgacgtttgacc 306
           |||||||||||||||| ||||| || || |   | ||| | |  ||||||| ||| ||||
Sbjct: 309 agtgcgcccatagatcacgagcagtgaccgcgaccgatccagcgagcccgatgttcgacc 250

                                                                       
Query: 307 agtgtgcggtgatggttgcctggtacccctgcctgttccatagaacgaccgcctttctgt 366
           | ||||| |||||||||||||||||   |||||||||||| || || || ||||| ||||
Sbjct: 249 aatgtgcagtgatggttgcctggtatgactgcctgttccagagcaccacagccttcctgt 190

                                          
Query: 367 tgccgctgagcggtccggcccagacctccaa 397
           ||  |||||| || |||||||| ||||||||
Sbjct: 189 tgttgctgagtggcccggcccaaacctccaa 159



to top

>gb|BT016264.1| Zea mays clone Contig97 mRNA sequence
          Length = 1459

 Score =  113 bits (57), Expect = 4e-22
 Identities = 189/233 (81%)
 Strand = Plus / Minus

                                                                        
Query: 165  agttactttggcgtcaggatgtacatcttgcagtcatgaggccccactgatgcggatagt 224
            ||||| || ||||||| ||  |||||||||||||| |||||   ||| || || ||||| 
Sbjct: 1188 agttagttcggcgtcaagacatacatcttgcagtcgtgaggtggcaccgaagctgatagc 1129

                                                                        
Query: 225  tgcccctgagcggagaacgacgagtgcgcccatagatcgcgagcggtcacggacgcggat 284
            || || ||||| ||||| |||||||||||||||||||| ||||| || || |  | ||| 
Sbjct: 1128 tggccttgagccgagaatgacgagtgcgcccatagatcacgagcagtgacagcagtggaa 1069

                                                                        
Query: 285  gccggaagcccgacgtttgaccagtgtgcggtgatggttgcctggtacccctgcctgttc 344
            |  || ||||||| | | ||||| || |||||||||||||||||||| ||||||| ||||
Sbjct: 1068 gaagggagcccgatgctcgaccactgcgcggtgatggttgcctggtatccctgccggttc 1009

                                                                 
Query: 345  catagaacgaccgcctttctgttgccgctgagcggtccggcccagacctccaa 397
            || ||||| || ||||| ||||||  ||||||||| || ||||| ||||||||
Sbjct: 1008 cagagaaccacggccttcctgttgttgctgagcggcccagcccaaacctccaa 956



to top

>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
              sequence
          Length = 139614

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                          
Query: 291    agcccgacgtttgaccagtgtgcggtgatggttgcctggtacccctgcctgttccataga 350
              ||||||| ||| ||||| ||||| |||||||||||||||||   |||||||||||| || 
Sbjct: 125904 agcccgatgttcgaccaatgtgcagtgatggttgcctggtatgactgcctgttccagagc 125963

                                                         
Query: 351    acgaccgcctttctgttgccgctgagcggtccggcccagacct 393
              || || ||||| ||||||  |||||| || |||||||| ||||
Sbjct: 125964 accacagccttcctgttgttgctgagtggcccggcccaaacct 126006



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                          
Query: 186    tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
              ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 125711 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 125770

                    
Query: 246    gagtgc 251
              ||||||
Sbjct: 125771 gagtgc 125776



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                            
Query: 291      agcccgacgtttgaccagtgtgcggtgatggttgcctggtacccctgcctgttccataga 350
                ||||||| ||| ||||| ||||| |||||||||||||||||   |||||||||||| || 
Sbjct: 18225266 agcccgatgttcgaccaatgtgcagtgatggttgcctggtatgactgcctgttccagagc 18225207

                                                           
Query: 351      acgaccgcctttctgttgccgctgagcggtccggcccagacct 393
                || || ||||| ||||||  |||||| || |||||||| ||||
Sbjct: 18225206 accacagccttcctgttgttgctgagtggcccggcccaaacct 18225164



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 186      tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
                ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 18225459 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 18225400

                      
Query: 246      gagtgc 251
                ||||||
Sbjct: 18225399 gagtgc 18225394



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                            
Query: 291      agcccgacgtttgaccagtgtgcggtgatggttgcctggtacccctgcctgttccataga 350
                ||||||| ||| ||||| ||||| |||||||||||||||||   |||||||||||| || 
Sbjct: 18234519 agcccgatgttcgaccaatgtgcagtgatggttgcctggtatgactgcctgttccagagc 18234460

                                                           
Query: 351      acgaccgcctttctgttgccgctgagcggtccggcccagacct 393
                || || ||||| ||||||  |||||| || |||||||| ||||
Sbjct: 18234459 accacagccttcctgttgttgctgagtggcccggcccaaacct 18234417



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 186      tacatcttgcagtcatgaggccccactgatgcggatagttgcccctgagcggagaacgac 245
                ||||||||||||||||||||| |||| ||||| ||||  || |||||||| | |||||| 
Sbjct: 18234712 tacatcttgcagtcatgaggcgccaccgatgctgatatctgtccctgagccgcgaacgaa 18234653

                      
Query: 246      gagtgc 251
                ||||||
Sbjct: 18234652 gagtgc 18234647



to top

>ref|NM_001012451.1| Mus musculus ankyrin repeat domain 6 (Ankrd6), transcript variant 3,
            mRNA
          Length = 4444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2707 ggacgcggatgccggaagccc 2727



to top

>ref|NM_001012450.1| Mus musculus ankyrin repeat domain 6 (Ankrd6), transcript variant 1,
            mRNA
          Length = 4733

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2996 ggacgcggatgccggaagccc 3016



to top

>ref|NM_080471.3| Mus musculus ankyrin repeat domain 6 (Ankrd6), transcript variant 2,
            mRNA
          Length = 4573

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2836 ggacgcggatgccggaagccc 2856



to top

>dbj|AK133551.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330400E10 product:ankyrin repeat
            domain 6, full insert sequence
          Length = 4460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2723 ggacgcggatgccggaagccc 2743



to top

>dbj|AK173070.1| Mus musculus mRNA for mKIAA0957 protein
          Length = 4484

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2747 ggacgcggatgccggaagccc 2767



to top

>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete
             sequence
          Length = 163802

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 275   ggacgcggatgccggaagccc 295
             |||||||||||||||||||||
Sbjct: 53866 ggacgcggatgccggaagccc 53846



to top

>gb|BC065177.1| Mus musculus ankyrin repeat domain 6, transcript variant 1, mRNA
            (cDNA clone MGC:90128 IMAGE:6825961), complete cds
          Length = 4521

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  ggacgcggatgccggaagccc 295
            |||||||||||||||||||||
Sbjct: 2946 ggacgcggatgccggaagccc 2966



to top

>gb|AF426384.1| Danio rerio deltaD protein gene, complete cds
          Length = 13352

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ctgagcggagaacgacgagt 249
            ||||||||||||||||||||
Sbjct: 6439 ctgagcggagaacgacgagt 6458



to top

>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
          Length = 198354

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    tacagttactttggcgtcag 181
              ||||||||||||||||||||
Sbjct: 184974 tacagttactttggcgtcag 184993



to top

>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tacagttactttggcgtcag 181
             ||||||||||||||||||||
Sbjct: 65754 tacagttactttggcgtcag 65735



to top

>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII
             project)
          Length = 94695

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tacagttactttggcgtcag 181
             ||||||||||||||||||||
Sbjct: 89032 tacagttactttggcgtcag 89013



to top

>gb|M27787.1|SYNECOANGA Synthetic Leu-30 angiogenin gene, 3' end
          Length = 382

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  gttacaacttgcaaacttca 30
           ||||||||||||||||||||
Sbjct: 239 gttacaacttgcaaacttca 258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,260,556
Number of Sequences: 3902068
Number of extensions: 2260556
Number of successful extensions: 39684
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39607
Number of HSP's gapped (non-prelim): 77
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top