>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)|
           (Single-stranded-nucleate endonuclease)
           (Deoxyribonuclease S1)
          Length = 287

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
 Frame = -1

Query: 682 DLGGNTIKLRWYXRKSNLHHVWDSDVITQAMKDFFNRDQDTMIEAIQRNI-TDDWSSEEK 506
           + GGN I + +    +NLHH+WD+++  +A   +      T  + +   I T  +SS++ 
Sbjct: 150 EAGGNGIDVTYDGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKD 209

Query: 505 QW-EACGSRTKITCAEKYAKESALLAC-----DAYEGVEQGDTLGDDYYFRALPVVEKRI 344
            W +    +  ++ +  +A ++    C     D    +   D L  +YY ++ PV E+ I
Sbjct: 210 SWTDGIDIKDPVSTSMIWAADANTYVCSTVLDDGLAYINSTD-LSGEYYDKSQPVFEELI 268

Query: 343 AQGGVRLAVILNQIFS 296
           A+ G RLA  L+ I S
Sbjct: 269 AKAGYRLAAWLDLIAS 284

>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)|
           (Deoxyribonuclease PA3)
          Length = 270

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
 Frame = -1

Query: 679 LGGNTIKLRWYXRKSNLHHVWDSDVITQAMKDFFNRDQDTMIEAIQRNI-TDDWSSEEKQ 503
           +GGN I + +     NLH  WD+ +  + +      D ++  + + +NI + +++++   
Sbjct: 132 VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQATG 191

Query: 502 W-EACGSRTKITCAEKYAKESALLACDAY-----EGVEQGDTLGDDYYFRALPVVEKRIA 341
           W +       IT A ++A ++  L C          ++ GD L   YY   +  +E +IA
Sbjct: 192 WIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGD-LYPTYYDSVIDTIELQIA 250

Query: 340 QGGVRLAVILNQI 302
           +GG RLA  +N+I
Sbjct: 251 KGGYRLANWINEI 263

>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)|
           (Deoxyribonuclease P1)
          Length = 270

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
 Frame = -1

Query: 679 LGGNTIKLRWYXRKSNLHHVWDSDVITQAMKDFFNRDQDTMIEAIQRNI-TDDWSSEEKQ 503
           +GGN I + +     NLH  WD+ +  + +      D ++  + + +NI + +++++   
Sbjct: 132 VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIG 191

Query: 502 W-EACGSRTKITCAEKYAKESALLACDAY-----EGVEQGDTLGDDYYFRALPVVEKRIA 341
           W +       IT A ++A ++  L C          ++ GD L   YY   +  +E +IA
Sbjct: 192 WIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGD-LYPTYYDSVIDTIELQIA 250

Query: 340 QGGVRLAVILNQI 302
           +GG RLA  +N+I
Sbjct: 251 KGGYRLANWINEI 263

>YWS4_CAEEL (Q10940) Hypothetical protein B0310.4|
          Length = 112

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 611 GRDHTG--HEGLFQQGPGHHDRGHPAQHHR*LVQRGEAMGGVRQQNQDHLRRKVRQGE 444
           G  H G  H G   +G  H  + H  + HR    RGE   G   + + H R K  +GE
Sbjct: 13  GETHRGETHRGETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETH-RGKTHRGE 69



 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 611 GRDHTG--HEGLFQQGPGHHDRGHPAQHHR*LVQRGEAMGGVRQQNQDHLRRKVRQGE 444
           G  H G  H G   +G  H    H  + HR    RGE   G   + + H R +  +GE
Sbjct: 23  GETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETH-RGETHRGE 79

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = -1

Query: 679 LGGNTIKLRWYXRKSNLHHVWDSDVITQAMKDFFNRDQDTMIEAIQRNITDDWSSEEKQW 500
           +GGN IK+ +  R+S L      +   Q M+DF+    +     + ++  +DWS++ +  
Sbjct: 578 IGGNKIKVDFANRESQLAFYHCMEKSGQDMRDFYEMLTERRAGQMAQSKHEDWSADAQSP 637

Query: 499 EACGSRTKITCAEKYAKESALLACDAYEGVEQGDTLGDD 383
             C  R +   + +Y++E        YE V    T  +D
Sbjct: 638 HKC--REERRGSYEYSQERTY-----YENVRTPGTYPED 669

>PIGC_HUMAN (Q92535) Phosphatidylinositol N-acetylglucosaminyltransferase|
           subunit C (EC 2.4.1.198) (Phosphatidylinositol-glycan
           biosynthesis, class C protein) (PIG-C)
          Length = 297

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 441 ALSLAYFSAQVILVLLPHASHCFSSLDQSSVMLRWMASIMVSWSLLKKSFMACVITSESH 620
           +L++A F++  +   LP + H F       +M+ +   I   W +L+K   AC  T  S+
Sbjct: 178 SLNMAIFASVCLASRLPRSLHAF-------IMVTFAIQIFALWPMLQKKLKAC--TPRSY 228

Query: 621 TWCRLLF 641
               LLF
Sbjct: 229 VGVTLLF 235

>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit 10|
            (MHC class I region proline-rich protein CAT53) (Protein
            FB19)
          Length = 925

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
 Frame = -3

Query: 638  EQPAPRVGFGRDHTGHEGLFQQGP------------GHHDRGHPAQHHR*LVQRGEAMGG 495
            E P   +G G  H  HEG    GP            GH  RG P   HR     G   GG
Sbjct: 818  EGPGGGMGAGGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGG 877

Query: 494  VRQQNQDH 471
             R  +  H
Sbjct: 878  HRGHDGGH 885

>CAPP_VIBPA (Q87L54) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 877

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = -1

Query: 436 LACDAYEGVEQGDTLGDDYYFRALPVVE-----------KRIAQGGVRLAVILNQIFSGK 290
           ++C+AY GV +G+     Y+ +A P +E           KR   GGV     +  IFS  
Sbjct: 661 VSCEAYRGVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS 720

Query: 289 NSRLQSI**MILIWI*SSAILEIKEDEQEDCLV 191
            +RL     ++  W+ +   ++   D+    L+
Sbjct: 721 QNRL-----VLPAWLGAGEAIQYSVDKGHQALL 748

>ANTP_DROME (P02833) Homeotic protein antennapedia|
          Length = 378

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 674 RQHHQTPMVQXEEQPAPRVGFGRDHTGHEGLFQQGPGHHDRGHPAQH 534
           + HH   M Q ++   P VG       H+G   QGP    +GHP QH
Sbjct: 223 QNHHNMGMYQ-QQSGVPPVGAPPQGMMHQG---QGPPQMHQGHPGQH 265

>CAPP_HAEIN (P43920) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 879

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
 Frame = -1

Query: 448 ESALLACDAYEGVEQGDTLGDDYYFRALPVVE-----------KRIAQGGVRLAVILNQI 302
           E + ++CD Y GV +GD     Y+  A P  E           KR   GGV     +  I
Sbjct: 658 ELSTISCDIYRGVVRGDKDFVPYFRSATPEQELSKLPLGSRPAKRNPNGGVESLRAIPWI 717

Query: 301 FSGKNSRLQSI**MILIWI*S-SAILEIKEDEQEDCL 194
           F+   +RL     M+  W+ + +AI ++ E  + D +
Sbjct: 718 FAWMQNRL-----MLPAWLGAGAAIRQVIEQGKGDII 749


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,004,226
Number of Sequences: 219361
Number of extensions: 1634419
Number of successful extensions: 4367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4331
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)