ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16l09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 1201 bits (606), Expect = 0.0 Identities = 608/609 (99%) Strand = Plus / Minus Query: 80 gtgatgtgctgcagcaacagcgagtctaagccgctttggacctttagtggacgactcaaa 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 gtgatgtgctgcagcaacagcgagtctaagccgctttggacctttagtggacgactcaaa 1082 Query: 140 acaaatttcatcgcgaattcgtgattgtggtgtagctatgtatcgttgtcagacaagaca 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 acaaatttcatcgcgaattcgtgattgtggtgtagctatgtatcgttgtcagacaagaca 1022 Query: 200 atcttcttgttcgtcctccttaatttctagtatagcactagattatatccatatcaatat 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 atcttcttgttcgtcctccttaatttctagtatagcactagattatatccatatcaatat 962 Query: 260 cattcatcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcac 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cattcatcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcac 902 Query: 320 cgccagcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagta 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 cgccagcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagta 842 Query: 380 atagtcgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaa 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 atagtcgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaa 782 Query: 440 tgcgctctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctc 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 tgcgctctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctc 722 Query: 500 ccattgcttctcctcgctggaccagtcatcggtgatgttgcgctggatggcctcgatcat 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 ccattgcttctcctcgctggaccagtcatcggtgatgttgcgctggatggcctcgatcat 662 Query: 560 ggtgtcctggtccctgttgaaaaagtccttcatggcctgtgtgatcacgtccgaatccca 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ggtgtcctggtccctgttgaaaaagtccttcatggcctgtgtgatcacgtccgaatccca 602 Query: 620 cacgtggtgcaggttgctcttcctnctgtaccatcggagtttgatggtgttgccgccgag 679 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 601 cacgtggtgcaggttgctcttcctcctgtaccatcggagtttgatggtgttgccgccgag 542 Query: 680 gtcgtcgac 688 ||||||||| Sbjct: 541 gtcgtcgac 533
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 422 bits (213), Expect = e-115 Identities = 372/424 (87%), Gaps = 6/424 (1%) Strand = Plus / Minus Query: 265 atcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcaccgcca 324 ||||||||||||||||||||| ||||| ||||||||| |||| ||||| |||||| Sbjct: 922 atcagatgctctgcagcctgc---cgttcccgctgaagatccggttgaggatggccgcca 866 Query: 325 gcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagtaatagt 384 |||||| ||| ||||| || | |||||||| || ||||||| ||| |||||| || | Sbjct: 865 gcctcaagcccccctgggcgagcctcttctgaacgaccggcagcgctttgaagtagtact 806 Query: 385 cgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaatgcgc 444 | ||||||| ||||||| | ||||||||||||||||| |||||||| ||||||| |||| Sbjct: 805 catctcctagggtgtcgtcctgctcgacgccctcgtaggcgtcgcatgccagcaccgcgc 746 Query: 445 tctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctcccatt 504 |||||| |||||||||||||||||||| || ||||| |||||| ||||| |||||| | Sbjct: 745 tctcctgggcgtacttttcggcgcagg---tcgtggttttgctgcggcacgtctcccact 689 Query: 505 gcttctcctcgctggaccagtcatcggtgatgttgcgctggatggcctcgatcatggtgt 564 |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct: 688 gcttctcctcactggaccagtcgtcggtgatgttgcgctggatggactcgatcatggcgt 629 Query: 565 cctggtccctgttgaaaaagtccttcatggcctgtgtgatcacgtccgaatcccacacgt 624 |||||||| ||| ||| ||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 628 cctggtccttgtcgaagaagtccttcatggtctgcgtgatcacgtccgagtcccacacgt 569 Query: 625 ggtgcaggttgctcttcctnctgtaccatcggagtttgatggtgttgccgccgaggtcgt 684 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 568 ggtgcaggttgctcttcctcctgtaccatcggagtttgatggtgttgccgccgaggtcgt 509 Query: 685 cgac 688 |||| Sbjct: 508 cgac 505
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 367 bits (185), Expect = 3e-98 Identities = 360/418 (86%), Gaps = 3/418 (0%) Strand = Plus / Minus Query: 265 atcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcaccgcca 324 ||||||||||||||||| ||| |||||||| ||||||||| |||| |||||| |||||| Sbjct: 932 atcagatgctctgcagcttgccgttcttcccgctgaagatccggttgaggatcgccgcca 873 Query: 325 gcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagtaatagt 384 |||| ||||| |||||||| |||| ||||| || ||||||| |||| |||||| || | Sbjct: 872 gcctgacgccgccctgagcgatccgcttctgaacgaccggcagcgccttgaagtagtact 813 Query: 385 cgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaatgcgc 444 | |||||||||||| | | |||| |||||||| |||||||||||||||||||| ||| | Sbjct: 812 catctcctaaggtggagtcctgcttgacgcccttgtacgcgtcgcaggccagcactgcac 753 Query: 445 tctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctcccatt 504 |||||| |||||||| || |||||||| |||||||||||||| |||||||||||| | Sbjct: 752 tctcctcagcgtacttgtcagcgcaggt---cttggttctgctgcggcacgcctcccact 696 Query: 505 gcttctcctcgctggaccagtcatcggtgatgttgcgctggatggcctcgatcatggtgt 564 |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| Sbjct: 695 gcttctcctcgctggaccagtcctcggtgatgttacgctggatggccttgatcatggtgt 636 Query: 565 cctggtccctgttgaaaaagtccttcatggcctgtgtgatcacgtccgaatcccacacgt 624 ||||||| ||| | | ||||||||||||||||| ||| |||||| |||||||||| Sbjct: 635 cctggtctctgccgtacaagtccttcatggcctgctcgatgacgtccacgtcccacacgt 576 Query: 625 ggtgcaggttgctcttcctnctgtaccatcggagtttgatggtgttgccgccgaggtc 682 ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| Sbjct: 575 ggtgcaggttgctcttcctcctgtaccagcggacgaggatggtgttgccgccgaggtc 518
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 67.9 bits (34), Expect = 4e-08 Identities = 195/248 (78%), Gaps = 3/248 (1%) Strand = Plus / Minus Query: 291 ttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatcctc 350 ||||| ||||||||| |||| || || | || ||||||||||| || ||||| |||||| Sbjct: 854 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 795 Query: 351 ttctcgacaaccggcaacgcccggaagtaatagtcgtctcctaaggtgtcgccttgctcg 410 |||| ||||| |||| || |||| ||||||| ||| |||||||| ||||||| Sbjct: 794 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 735 Query: 411 acgccctcgtacgcgtcgcaggccagcaatgcgctctccttggcgtacttttcggcgcag 470 || ||||||||||| | ||| || ||| ||| ||||||| ||||||||| ||||| || Sbjct: 734 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 675 Query: 471 gtgatcttggttctgctgccgcacgcctcccattgcttctcctcgctggaccagtcatcg 530 | |||| || | ||| | ||| | |||||| |||||||||||| ||||||| ||||| Sbjct: 674 g---tctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatca 618 Query: 531 gtgatgtt 538 |||||||| Sbjct: 617 gtgatgtt 610 Score = 50.1 bits (25), Expect = 0.010 Identities = 51/60 (85%) Strand = Plus / Minus Query: 614 atcccacacgtggtgcaggttgctcttcctnctgtaccatcggagtttgatggtgttgcc 673 |||||||||||| || |||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 534 atcccacacgtgatgaaggttgctcttccttgtgtaccaatggacgatgatggtgttgcc 475
>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full insert sequence Length = 484 Score = 67.9 bits (34), Expect = 4e-08 Identities = 195/248 (78%), Gaps = 3/248 (1%) Strand = Plus / Minus Query: 291 ttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatcctc 350 ||||| ||||||||| |||| || || | || ||||||||||| || ||||| |||||| Sbjct: 255 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 196 Query: 351 ttctcgacaaccggcaacgcccggaagtaatagtcgtctcctaaggtgtcgccttgctcg 410 |||| ||||| |||| || |||| ||||||| ||| |||||||| ||||||| Sbjct: 195 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 136 Query: 411 acgccctcgtacgcgtcgcaggccagcaatgcgctctccttggcgtacttttcggcgcag 470 || ||||||||||| | ||| || ||| ||| ||||||| ||||||||| ||||| || Sbjct: 135 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 76 Query: 471 gtgatcttggttctgctgccgcacgcctcccattgcttctcctcgctggaccagtcatcg 530 | |||| || | ||| | ||| | |||||| |||||||||||| ||||||| ||||| Sbjct: 75 g---tctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatca 19 Query: 531 gtgatgtt 538 |||||||| Sbjct: 18 gtgatgtt 11
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 60.0 bits (30), Expect = 1e-05 Identities = 194/248 (78%), Gaps = 3/248 (1%) Strand = Plus / Minus Query: 291 ttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatcctc 350 ||||| ||||||||| |||| || || | || ||||||||||| || ||||| |||||| Sbjct: 880 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 821 Query: 351 ttctcgacaaccggcaacgcccggaagtaatagtcgtctcctaaggtgtcgccttgctcg 410 |||| ||||| |||| || |||| ||||||| ||| |||||||| ||||||| Sbjct: 820 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 761 Query: 411 acgccctcgtacgcgtcgcaggccagcaatgcgctctccttggcgtacttttcggcgcag 470 || ||||| ||||| | ||| || ||| ||| ||||||| ||||||||| ||||| || Sbjct: 760 acaccctcatacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 701 Query: 471 gtgatcttggttctgctgccgcacgcctcccattgcttctcctcgctggaccagtcatcg 530 || ||| || | ||| | ||| | |||||| |||||||||||| ||||||| ||||| Sbjct: 700 gt---ctttgtccggctacggcaagtctcccactgcttctcctcggtggaccactcatca 644 Query: 531 gtgatgtt 538 |||||||| Sbjct: 643 gtgatgtt 636 Score = 50.1 bits (25), Expect = 0.010 Identities = 51/60 (85%) Strand = Plus / Minus Query: 614 atcccacacgtggtgcaggttgctcttcctnctgtaccatcggagtttgatggtgttgcc 673 |||||||||||| || |||||||||||||| ||||||| ||| ||||||||||||| Sbjct: 560 atcccacacgtgatgaaggttgctcttccttgtgtaccaatggacgatgatggtgttgcc 501
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 102302 tagattttatccatatcaatatcat 102326
>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence Length = 214621 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 25967 tagattttatccatatcaatatcat 25991
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 497 ctcccattgcttctcctcgctggaccagtcatc 529 |||||| |||||||||||| ||||||| ||||| Sbjct: 62062 ctcccactgcttctcctcggtggaccactcatc 62030 Score = 40.1 bits (20), Expect = 9.4 Identities = 53/64 (82%) Strand = Plus / Minus Query: 291 ttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatcctc 350 ||||| ||||||||| |||| || || | || ||||||||||| || ||||| |||||| Sbjct: 62465 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 62406 Query: 351 ttct 354 |||| Sbjct: 62405 ttct 62402
>ref|NM_205915.1| Drosophila melanogaster CG9526-RB, transcript variant B (CG9526), mRNA Length = 2102 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 1950 tagattttatccatatcaatatcat 1926
>ref|NM_135185.2| Drosophila melanogaster CG9526-RA, transcript variant A (CG9526), mRNA Length = 2070 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 1918 tagattttatccatatcaatatcat 1894
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 497 ctcccattgcttctcctcgctggaccagtcatc 529 |||||| |||||||||||| ||||||| ||||| Sbjct: 33289801 ctcccactgcttctcctcggtggaccactcatc 33289769 Score = 40.1 bits (20), Expect = 9.4 Identities = 53/64 (82%) Strand = Plus / Minus Query: 291 ttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatcctc 350 ||||| ||||||||| |||| || || | || ||||||||||| || ||||| |||||| Sbjct: 33290204 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 33290145 Query: 351 ttct 354 |||| Sbjct: 33290144 ttct 33290141
>gb|BT003271.1| Drosophila melanogaster LD17340 full insert cDNA Length = 2089 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 1918 tagattttatccatatcaatatcat 1894
>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete sequence Length = 280095 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 238 tagattatatccatatcaatatcat 262 |||||| |||||||||||||||||| Sbjct: 241905 tagattttatccatatcaatatcat 241881
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 aaggtgtcgccttgctcgacgccc 416 ||||||||||| |||||||||||| Sbjct: 963926 aaggtgtcgccgtgctcgacgccc 963949
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 cgcaggccagcaatgcgctctcct 450 ||||||||||||||||| |||||| Sbjct: 4502622 cgcaggccagcaatgcggtctcct 4502645
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 661 tgatggtgttgccgccgagg 680 |||||||||||||||||||| Sbjct: 2688 tgatggtgttgccgccgagg 2707
>gb|AE011926.1| Xanthomonas axonopodis pv. citri str. 306, section 304 of 469 of the complete genome Length = 11166 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 gatgttgcgctggatggcctcgat 556 ||||||||||||| |||||||||| Sbjct: 9765 gatgttgcgctggctggcctcgat 9788
>dbj|AB169242.1| Macaca fascicularis testis cDNA, clone: QtsA-18189, similar to human testis expressed gene 261 (TEX261), mRNA, RefSeq: NM_144582.2 Length = 3315 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 tcatggtgtcctggtccctg 575 |||||||||||||||||||| Sbjct: 2907 tcatggtgtcctggtccctg 2926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,296,811 Number of Sequences: 3902068 Number of extensions: 4296811 Number of successful extensions: 78132 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77938 Number of HSP's gapped (non-prelim): 188 length of query: 688 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 665 effective length of database: 17,143,297,704 effective search space: 11400292973160 effective search space used: 11400292973160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
