ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106862.1| Zea mays PCO139775 mRNA sequence 264 3e-67
2ref|XM_450109.1| Oryza sativa (japonica cultivar-group), mRNA 250 4e-63
3dbj|AK065517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
5dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
6ref|NM_126776.1| Arabidopsis thaliana nucleic acid binding AT2G0... 44 0.49
7gb|AC133931.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
8gb|AY312280.1| Mus musculus DIA3 mRNA, complete cds 44 0.49
9gb|AC127552.3| Mus musculus BAC clone RP24-550N13 from chromosom... 44 0.49
10gb|AC020642.7| Homo sapiens chromosome 10 clone RP11-275D14, com... 44 0.49
11gb|AC004483.3| Arabidopsis thaliana chromosome 2 clone T12J2 map... 44 0.49
12dbj|AK153986.1| Mus musculus 2 days neonate thymus thymic cells ... 44 0.49
13dbj|AK088648.1| Mus musculus 2 days neonate thymus thymic cells ... 44 0.49
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
15ref|NM_017398.1| Mus musculus diaphanous homolog 2 (Drosophila) ... 44 0.49
16gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, com... 44 0.49
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
18emb|AL732443.6| Mouse DNA sequence from clone RP23-90H6 on chrom... 44 0.49
19emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20... 42 1.9
20dbj|AK094361.1| Homo sapiens cDNA FLJ37042 fis, clone BRACE2011947 42 1.9
21gb|AE011856.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.9
22dbj|AB227172.1| Aspergillus oryzae cDNA, contig sequence: AoEST4036 42 1.9
23dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 42 1.9
24ref|XM_938936.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.9
25ref|XM_926525.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.9
26gb|AC026425.4| Homo sapiens chromosome 5 clone CTD-2183D23, comp... 42 1.9
27gb|AC012066.10| Homo sapiens BAC clone RP11-173H9 from 2, comple... 42 1.9
28dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 1.9
29gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P1... 42 1.9
30emb|BX538015.1|HSM806164 Homo sapiens mRNA; cDNA DKFZp686E2158 (... 42 1.9
31emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 42 1.9
32gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, co... 40 7.6
33gb|AC165433.5| Mus musculus chromosome 5, clone RP23-442L7, comp... 40 7.6
34gb|AY962207.1| Hevea brasiliensis clone hmct41 microsatellite se... 40 7.6
35gb|AC122438.2| Mus musculus BAC clone RP24-216M6 from 5, complet... 40 7.6
36emb|AL136219.17| Human DNA sequence from clone RP11-149B7 on chr... 40 7.6
37emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on ... 40 7.6
38emb|CR855397.9| Zebrafish DNA sequence from clone CH73-77E20 in ... 40 7.6
39gb|AC139671.10| Mus musculus chromosome 15, clone RP23-230O9, co... 40 7.6
40gb|AC149217.4| Mus musculus BAC clone RP24-147O12 from chromosom... 40 7.6
41gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 40 7.6
42gb|AC154197.1| Mus musculus BAC clone RP24-78I22 from chromosome... 40 7.6
43emb|BX470181.7| Zebrafish DNA sequence from clone CH211-91P22 in... 40 7.6
44emb|BX088564.10| Zebrafish DNA sequence from clone CH211-239H19 ... 40 7.6
45emb|BX005474.6| Zebrafish DNA sequence from clone CH211-141E22 i... 40 7.6
46emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chro... 40 7.6 
>gb|AY106862.1| Zea mays PCO139775 mRNA sequence
          Length = 492

 Score =  264 bits (133), Expect = 3e-67
 Identities = 232/265 (87%)
 Strand = Plus / Minus

                                                                       
Query: 212 ttcctgacactctttccatactctttcctgatctcccacagctgctccccgacctccttc 271
           ||||| ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 267 ttcctaacactctttccgtactctttccttatctcccacagctgctccccaacttccttc 208

                                                                       
Query: 272 atggtcggacggtcctcccgtgttggagcggcgcactggaacgccaaactcagaagcttc 331
           |||||||| ||||| |||||||| ||||| ||||| ||||| ||||  || || ||||| 
Sbjct: 207 atggtcggccggtcgtcccgtgtcggagcagcgcattggaaagccaggctaaggagcttt 148

                                                                       
Query: 332 tccagcacatcctcatccacgcgatcttccagtagtgggtccagtatctctctcatgttg 391
           || ||||| || || |||||| |||||||||| | ||||||||||||||||||| |||||
Sbjct: 147 tcaagcacctcgtcgtccacgtgatcttccagcaatgggtccagtatctctctcgtgttg 88

                                                                       
Query: 392 ccttcattgaatttcttgaaagtccatctgatagtaatcctctcttcagtggcccgcttc 451
           ||||| |||||||| ||||||||||||||||| || ||||||||||||| ||  ||||||
Sbjct: 87  ccttcgttgaattttttgaaagtccatctgattgtgatcctctcttcaggggttcgcttc 28

                                    
Query: 452 agctctacgggtcgacgagcagaaa 476
           |||||||||||||  ||||||||||
Sbjct: 27  agctctacgggtctgcgagcagaaa 3
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>ref|XM_450109.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2340

 Score =  250 bits (126), Expect = 4e-63
 Identities = 273/322 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  tcctgacactctttccatactctttcctgatctcccacagctgctccccgacctccttca 272
            |||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 2044 tcctgacactctttccatactccttcctgatctcccacagctgctctccaacttctttca 1985

                                                                        
Query: 273  tggtcggacggtcctcccgtgttggagcggcgcactggaacgccaaactcagaagcttct 332
            ||||||||||||||||||| || |||||||| |||||||| |||||  |||| ||| | |
Sbjct: 1984 tggtcggacggtcctcccgcgtcggagcggcacactggaatgccaagttcagcagccttt 1925

                                                                        
Query: 333  ccagcacatcctcatccacgcgatcttccagtagtgggtccagtatctctctcatgttgc 392
            | ||||| || || |||||  |||| ||||  |  || |||| |||||| ||| |||| |
Sbjct: 1924 cgagcacctcatcgtccacaggatcctccaacaacggatccaatatctccctcctgttcc 1865

                                                                        
Query: 393  cttcattgaatttcttgaaagtccatctgatagtaatcctctcttcagtggcccgcttca 452
            ||||||||||||||||||| |||||||||||||| || ||||||||||  ||||||||||
Sbjct: 1864 cttcattgaatttcttgaatgtccatctgatagttattctctcttcagcagcccgcttca 1805

                                                                        
Query: 453  gctctacgggtcgacgagcagaaatgatttctacaagaagtatgccaaaagagaagacat 512
            | ||||| ||||| |||||||| |  ||||| ||||| ||||||||||| |||||||| |
Sbjct: 1804 gttctaccggtcggcgagcagagagaatttccacaagcagtatgccaaaggagaagacgt 1745

                                  
Query: 513  cacttttaggagtgagctggta 534
            | || |||||||| | ||||||
Sbjct: 1744 cgctcttaggagtcaactggta 1723
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>dbj|AK065517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027P20, full
            insert sequence
          Length = 2337

 Score =  250 bits (126), Expect = 4e-63
 Identities = 273/322 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  tcctgacactctttccatactctttcctgatctcccacagctgctccccgacctccttca 272
            |||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 2041 tcctgacactctttccatactccttcctgatctcccacagctgctctccaacttctttca 1982

                                                                        
Query: 273  tggtcggacggtcctcccgtgttggagcggcgcactggaacgccaaactcagaagcttct 332
            ||||||||||||||||||| || |||||||| |||||||| |||||  |||| ||| | |
Sbjct: 1981 tggtcggacggtcctcccgcgtcggagcggcacactggaatgccaagttcagcagccttt 1922

                                                                        
Query: 333  ccagcacatcctcatccacgcgatcttccagtagtgggtccagtatctctctcatgttgc 392
            | ||||| || || |||||  |||| ||||  |  || |||| |||||| ||| |||| |
Sbjct: 1921 cgagcacctcatcgtccacaggatcctccaacaacggatccaatatctccctcctgttcc 1862

                                                                        
Query: 393  cttcattgaatttcttgaaagtccatctgatagtaatcctctcttcagtggcccgcttca 452
            ||||||||||||||||||| |||||||||||||| || ||||||||||  ||||||||||
Sbjct: 1861 cttcattgaatttcttgaatgtccatctgatagttattctctcttcagcagcccgcttca 1802

                                                                        
Query: 453  gctctacgggtcgacgagcagaaatgatttctacaagaagtatgccaaaagagaagacat 512
            | ||||| ||||| |||||||| |  ||||| ||||| ||||||||||| |||||||| |
Sbjct: 1801 gttctaccggtcggcgagcagagagaatttccacaagcagtatgccaaaggagaagacgt 1742

                                  
Query: 513  cacttttaggagtgagctggta 534
            | || |||||||| | ||||||
Sbjct: 1741 cgctcttaggagtcaactggta 1720
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  157 bits (79), Expect = 5e-35
 Identities = 169/199 (84%)
 Strand = Plus / Minus

                                                                           
Query: 213     tcctgacactctttccatactctttcctgatctcccacagctgctccccgacctccttca 272
               |||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 1757223 tcctgacactctttccatactccttcctgatctcccacagctgctctccaacttctttca 1757164

                                                                           
Query: 273     tggtcggacggtcctcccgtgttggagcggcgcactggaacgccaaactcagaagcttct 332
               ||||||||||||||||||| || |||||||| |||||||| |||||  |||| ||| | |
Sbjct: 1757163 tggtcggacggtcctcccgcgtcggagcggcacactggaatgccaagttcagcagccttt 1757104

                                                                           
Query: 333     ccagcacatcctcatccacgcgatcttccagtagtgggtccagtatctctctcatgttgc 392
               | ||||| || || |||||  |||| ||||  |  || |||| |||||| ||| |||| |
Sbjct: 1757103 cgagcacctcatcgtccacaggatcctccaacaacggatccaatatctccctcctgttcc 1757044

                                  
Query: 393     cttcattgaatttcttgaa 411
               |||||||||||||||||||
Sbjct: 1757043 cttcattgaatttcttgaa 1757025



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                           
Query: 415     ccatctgatagtaatcctctcttcagtggcccgcttcagctctacgggtcgacgagcaga 474
               |||||||||||| || ||||||||||  ||||||||||| ||||| ||||| ||||||||
Sbjct: 1756674 ccatctgatagttattctctcttcagcagcccgcttcagttctaccggtcggcgagcaga 1756615

                                                                           
Query: 475     aatgatttctacaagaagtatgccaaaagagaagacatcacttttaggagtgagctggta 534
                |  ||||| ||||| ||||||||||| |||||||| || || |||||||| | ||||||
Sbjct: 1756614 gagaatttccacaagcagtatgccaaaggagaagacgtcgctcttaggagtcaactggta 1756555
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>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score =  157 bits (79), Expect = 5e-35
 Identities = 169/199 (84%)
 Strand = Plus / Minus

                                                                          
Query: 213    tcctgacactctttccatactctttcctgatctcccacagctgctccccgacctccttca 272
              |||||||||||||||||||||| ||||||||||||||||||||||| || || || ||||
Sbjct: 143795 tcctgacactctttccatactccttcctgatctcccacagctgctctccaacttctttca 143736

                                                                          
Query: 273    tggtcggacggtcctcccgtgttggagcggcgcactggaacgccaaactcagaagcttct 332
              ||||||||||||||||||| || |||||||| |||||||| |||||  |||| ||| | |
Sbjct: 143735 tggtcggacggtcctcccgcgtcggagcggcacactggaatgccaagttcagcagccttt 143676

                                                                          
Query: 333    ccagcacatcctcatccacgcgatcttccagtagtgggtccagtatctctctcatgttgc 392
              | ||||| || || |||||  |||| ||||  |  || |||| |||||| ||| |||| |
Sbjct: 143675 cgagcacctcatcgtccacaggatcctccaacaacggatccaatatctccctcctgttcc 143616

                                 
Query: 393    cttcattgaatttcttgaa 411
              |||||||||||||||||||
Sbjct: 143615 cttcattgaatttcttgaa 143597



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                          
Query: 415    ccatctgatagtaatcctctcttcagtggcccgcttcagctctacgggtcgacgagcaga 474
              |||||||||||| || ||||||||||  ||||||||||| ||||| ||||| ||||||||
Sbjct: 143246 ccatctgatagttattctctcttcagcagcccgcttcagttctaccggtcggcgagcaga 143187

                                                                          
Query: 475    aatgatttctacaagaagtatgccaaaagagaagacatcacttttaggagtgagctggta 534
               |  ||||| ||||| ||||||||||| |||||||| || || |||||||| | ||||||
Sbjct: 143186 gagaatttccacaagcagtatgccaaaggagaagacgtcgctcttaggagtcaactggta 143127
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>ref|NM_126776.1| Arabidopsis thaliana nucleic acid binding AT2G07740 mRNA, complete
           cds
          Length = 1230

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 221 ctctttccatactctttcctgatctc 246
           ||||||||| ||||||||||||||||
Sbjct: 737 ctctttccacactctttcctgatctc 712
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>gb|AC133931.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0013M05 map C3, complete sequence
          Length = 131117

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 247   ccacagctgctccccgacctcc 268
             ||||||||||||||||||||||
Sbjct: 32279 ccacagctgctccccgacctcc 32258
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>gb|AY312280.1| Mus musculus DIA3 mRNA, complete cds
          Length = 3660

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 322 cagaagcttctccagcacatcc 343
           ||||||||||||||||||||||
Sbjct: 831 cagaagcttctccagcacatcc 810
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>gb|AC127552.3| Mus musculus BAC clone RP24-550N13 from chromosome 3, complete sequence
          Length = 156534

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 219   cactctttccatactctttcctgatc 244
             |||||||||||||||| |||||||||
Sbjct: 52915 cactctttccatactcattcctgatc 52940
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>gb|AC020642.7| Homo sapiens chromosome 10 clone RP11-275D14, complete sequence
          Length = 145697

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 376    tatctctctcatgttgccttca 397
              ||||||||||||||||||||||
Sbjct: 141171 tatctctctcatgttgccttca 141192
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>gb|AC004483.3| Arabidopsis thaliana chromosome 2 clone T12J2 map mi421, complete
             sequence
          Length = 85463

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 221   ctctttccatactctttcctgatctc 246
             ||||||||| ||||||||||||||||
Sbjct: 48288 ctctttccacactctttcctgatctc 48313
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>dbj|AK153986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430019G02
           product:Diaphanous homolog 2 homolog [Mus musculus],
           full insert sequence
          Length = 4480

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 322 cagaagcttctccagcacatcc 343
           ||||||||||||||||||||||
Sbjct: 882 cagaagcttctccagcacatcc 861
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>dbj|AK088648.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430022I22
           product:diaphanous homolog 2 (Drosophila), full insert
           sequence
          Length = 4208

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 322 cagaagcttctccagcacatcc 343
           ||||||||||||||||||||||
Sbjct: 828 cagaagcttctccagcacatcc 807
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 247      ccacagctgctccccgacctcc 268
                ||||||||||||||||||||||
Sbjct: 13447720 ccacagctgctccccgacctcc 13447699
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>ref|NM_017398.1| Mus musculus diaphanous homolog 2 (Drosophila) (Diap2), mRNA
          Length = 4208

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 322 cagaagcttctccagcacatcc 343
           ||||||||||||||||||||||
Sbjct: 828 cagaagcttctccagcacatcc 807
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>gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, complete sequence
          Length = 168704

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 219    cactctttccatactctttcctgatc 244
              |||||||||||||||| |||||||||
Sbjct: 114279 cactctttccatactcattcctgatc 114304
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 247      ccacagctgctccccgacctcc 268
                ||||||||||||||||||||||
Sbjct: 13527899 ccacagctgctccccgacctcc 13527878
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>emb|AL732443.6| Mouse DNA sequence from clone RP23-90H6 on chromosome X, complete
              sequence
          Length = 219342

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 322    cagaagcttctccagcacatcc 343
              ||||||||||||||||||||||
Sbjct: 144053 cagaagcttctccagcacatcc 144032
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>emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20 on chromosome 6p22.1-22.3
             Contains the 5' end of a novel protein similar to zinc
             finger protein 306 (ZNF306, ZFP47), the gene for a novel
             C2H2 type zinc finger protein, a novel gene, a zinc finger
             protein SRE-ZBP pseudogene and a CpG island, complete
             sequence
          Length = 97847

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 144   atcaagatgttcatggaaagaattt 168
             |||||| ||||||||||||||||||
Sbjct: 46660 atcaagctgttcatggaaagaattt 46684
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>dbj|AK094361.1| Homo sapiens cDNA FLJ37042 fis, clone BRACE2011947
          Length = 2142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 144  atcaagatgttcatggaaagaattt 168
            |||||| ||||||||||||||||||
Sbjct: 1347 atcaagctgttcatggaaagaattt 1323
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>gb|AE011856.1| Xanthomonas axonopodis pv. citri str. 306,  section 234 of 469 of the
            complete genome
          Length = 9162

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 332  tccagcacatcctcatccacg 352
            |||||||||||||||||||||
Sbjct: 3166 tccagcacatcctcatccacg 3186
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>dbj|AB227172.1| Aspergillus oryzae cDNA, contig sequence: AoEST4036
          Length = 937

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cacagctgctccccgacctcc 268
           |||||||||||||||||||||
Sbjct: 142 cacagctgctccccgacctcc 122
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     cacagctgctccccgacctcc 268
               |||||||||||||||||||||
Sbjct: 1143670 cacagctgctccccgacctcc 1143690
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>ref|XM_938936.1| PREDICTED: Homo sapiens hypothetical protein LOC649861 (LOC649861),
            mRNA
          Length = 3340

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 144  atcaagatgttcatggaaagaattt 168
            |||||| ||||||||||||||||||
Sbjct: 2275 atcaagctgttcatggaaagaattt 2299
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>ref|XM_926525.1| PREDICTED: Homo sapiens hypothetical protein LOC643155 (LOC643155),
            mRNA
          Length = 3333

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 144  atcaagatgttcatggaaagaattt 168
            |||||| ||||||||||||||||||
Sbjct: 2276 atcaagctgttcatggaaagaattt 2300
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>gb|AC026425.4| Homo sapiens chromosome 5 clone CTD-2183D23, complete sequence
          Length = 113647

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 144   atcaagatgttcatggaaagaattt 168
             |||||| ||||||||||||||||||
Sbjct: 87520 atcaagctgttcatggaaagaattt 87544
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>gb|AC012066.10| Homo sapiens BAC clone RP11-173H9 from 2, complete sequence
          Length = 188547

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   tgatctcccacagctgctccc 260
             |||||||||||||||||||||
Sbjct: 27800 tgatctcccacagctgctccc 27820
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 374     agtatctctctcatgttgcct 394
               |||||||||||||||||||||
Sbjct: 1281509 agtatctctctcatgttgcct 1281489
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>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence
          Length = 217898

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 144   atcaagatgttcatggaaagaattt 168
             |||||| ||||||||||||||||||
Sbjct: 76913 atcaagctgttcatggaaagaattt 76937
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>emb|BX538015.1|HSM806164 Homo sapiens mRNA; cDNA DKFZp686E2158 (from clone DKFZp686E2158);
            complete cds
          Length = 2894

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 144  atcaagatgttcatggaaagaattt 168
            |||||| ||||||||||||||||||
Sbjct: 2282 atcaagctgttcatggaaagaattt 2306
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
              sequence
          Length = 151493

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    tgatctcccacagctgctccc 260
              |||||||||||||||||||||
Sbjct: 113716 tgatctcccacagctgctccc 113736
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>gb|AC124637.10| Mus musculus chromosome 15, clone RP23-458B6, complete sequence
          Length = 200607

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  tgctccccgacctccttcatggtc 277
            ||||||||||||| ||||||||||
Sbjct: 4855 tgctccccgacctgcttcatggtc 4832
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>gb|AC165433.5| Mus musculus chromosome 5, clone RP23-442L7, complete sequence
          Length = 202557

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    ttgaatttcttgaaagtcca 417
              ||||||||||||||||||||
Sbjct: 109333 ttgaatttcttgaaagtcca 109352
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>gb|AY962207.1| Hevea brasiliensis clone hmct41 microsatellite sequence
          Length = 695

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 378 tctctctcatgttgccttcattgaattt 405
           ||||||||||||| ||| ||||||||||
Sbjct: 505 tctctctcatgtttcctccattgaattt 532
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>gb|AC122438.2| Mus musculus BAC clone RP24-216M6 from 5, complete sequence
          Length = 193659

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    ttgaatttcttgaaagtcca 417
              ||||||||||||||||||||
Sbjct: 161328 ttgaatttcttgaaagtcca 161309
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>emb|AL136219.17| Human DNA sequence from clone RP11-149B7 on chromosome 13 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)(GAPDH)
             pseudogene, 2 novel genes, a H2B histone family, member H
             (H2BFH)(H2B.h, H2B/h, dJ221C16.8) pseudogene, the 3' end
             of the EFHA1 gene for EF hand domain family, member A1 and
             three CpG islands, complete sequence
          Length = 167830

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tgtaaagggaattttaagtc 36
             ||||||||||||||||||||
Sbjct: 47046 tgtaaagggaattttaagtc 47027
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>emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on chromosome 6q16.1-21 Contains
             the 5' end of the gene for a novel protein (KIAA1900) and
             a CpG island, complete sequence
          Length = 150789

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gatgttcatggaaagaattt 168
             ||||||||||||||||||||
Sbjct: 56553 gatgttcatggaaagaattt 56534
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>emb|CR855397.9| Zebrafish DNA sequence from clone CH73-77E20 in linkage group 18,
            complete sequence
          Length = 104077

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 184  gtgattaaaaagcacatgat 203
            ||||||||||||||||||||
Sbjct: 2349 gtgattaaaaagcacatgat 2368
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>gb|AC139671.10| Mus musculus chromosome 15, clone RP23-230O9, complete sequence
          Length = 224181

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    tgctccccgacctccttcatggtc 277
              ||||||||||||| ||||||||||
Sbjct: 173467 tgctccccgacctgcttcatggtc 173444
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>gb|AC149217.4| Mus musculus BAC clone RP24-147O12 from chromosome 7, complete sequence
          Length = 205466

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 203    tttcacgctttcctgacactctttccat 230
              |||||| |||||||||||| ||||||||
Sbjct: 181753 tttcaccctttcctgacacactttccat 181780
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 203   tttcacgctttcctgacactctttccat 230
             |||||| |||||||||||| ||||||||
Sbjct: 54801 tttcaccctttcctgacacactttccat 54828
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>gb|AC154197.1| Mus musculus BAC clone RP24-78I22 from chromosome 14, complete sequence
          Length = 201042

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 379   ctctctcatgttgccttcattgaatttcttga 410
             |||| |||||||||||||| | ||||||||||
Sbjct: 75991 ctctgtcatgttgccttcagtaaatttcttga 76022
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>emb|BX470181.7| Zebrafish DNA sequence from clone CH211-91P22 in linkage group 18,
             complete sequence
          Length = 186084

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   gtgattaaaaagcacatgat 203
             ||||||||||||||||||||
Sbjct: 75646 gtgattaaaaagcacatgat 75627
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>emb|BX088564.10| Zebrafish DNA sequence from clone CH211-239H19 in linkage group 4,
             complete sequence
          Length = 132891

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   actctttccatactctttcc 239
             ||||||||||||||||||||
Sbjct: 62385 actctttccatactctttcc 62404
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>emb|BX005474.6| Zebrafish DNA sequence from clone CH211-141E22 in linkage group 18,
            complete sequence
          Length = 106095

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 184  gtgattaaaaagcacatgat 203
            ||||||||||||||||||||
Sbjct: 4343 gtgattaaaaagcacatgat 4362
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>emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chromosome X, complete
             sequence
          Length = 180106

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    actagactgcaaagtggtta 65
             ||||||||||||||||||||
Sbjct: 14822 actagactgcaaagtggtta 14841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,756,208
Number of Sequences: 3902068
Number of extensions: 4756208
Number of successful extensions: 88949
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88777
Number of HSP's gapped (non-prelim): 172
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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