Clone Name | rbasd16l08 |
---|---|
Clone Library Name | barley_pub |
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 aatattatttttcttggaaaa 203 ||||||||||||||||||||| Sbjct: 37263 aatattatttttcttggaaaa 37243
>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence Length = 184603 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ttgcgaacattgatgggctg 42 |||||||||||||||||||| Sbjct: 127907 ttgcgaacattgatgggctg 127926
>gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and Tnf receptor associated protein-like mRNA, complete sequence Length = 1381 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gaacattgatgggctggatc 46 |||||||||||||||||||| Sbjct: 275 gaacattgatgggctggatc 294
>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA clone IMAGE:5061936), partial cds Length = 2951 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1580 atttttcttggaaaagaaaa 1561
>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2, transcript variant 1 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2, transcript variant 3 (Pgrmc2), mRNA Length = 3017 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1649 atttttcttggaaaagaaaa 1630
>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence Length = 167741 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ttgcgaacattgatgggctg 42 |||||||||||||||||||| Sbjct: 55387 ttgcgaacattgatgggctg 55406
>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence Length = 200790 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 40220 atttttcttggaaaagaaaa 40239
>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1, complete sequence Length = 122777 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gaatattatttttcttggaa 201 |||||||||||||||||||| Sbjct: 58941 gaatattatttttcttggaa 58922
>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230117D02 product:progesterone receptor membrane component 2, full insert sequence Length = 2972 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1619 atttttcttggaaaagaaaa 1600
>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched library, clone:G430007N18 product:progesterone receptor membrane component 2, full insert sequence Length = 1019 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 822 atttttcttggaaaagaaaa 803
>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631434O19 product:MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog [Homo sapiens], full insert sequence Length = 2558 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 atttttcttggaaaagaaaa 208 |||||||||||||||||||| Sbjct: 1538 atttttcttggaaaagaaaa 1519
>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence Length = 183088 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttttcttggaaaagaaaaac 210 |||||||||||||||||||| Sbjct: 27202 ttttcttggaaaagaaaaac 27183
>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete sequence Length = 168606 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 atattatttttcttggaaaagaaa 207 |||||||||||||| ||||||||| Sbjct: 164789 atattatttttctttgaaaagaaa 164812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,014,005 Number of Sequences: 3902068 Number of extensions: 3014005 Number of successful extensions: 54366 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54345 Number of HSP's gapped (non-prelim): 21 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)