ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 42 0.86
2gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, comple... 40 3.4
3gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and T... 40 3.4
4gb|BC044759.2| Mus musculus progesterone receptor membrane compo... 40 3.4
5ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor m... 40 3.4
6ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor m... 40 3.4
7ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor m... 40 3.4
8gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosom... 40 3.4
9gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, co... 40 3.4
10emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23... 40 3.4
11dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDN... 40 3.4
12dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN fu... 40 3.4
13dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 3.4
14gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, com... 40 3.4
15gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 3.4

>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   aatattatttttcttggaaaa 203
             |||||||||||||||||||||
Sbjct: 37263 aatattatttttcttggaaaa 37243



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>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence
          Length = 184603

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ttgcgaacattgatgggctg 42
              ||||||||||||||||||||
Sbjct: 127907 ttgcgaacattgatgggctg 127926



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>gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and Tnf receptor
           associated protein-like mRNA, complete sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gaacattgatgggctggatc 46
           ||||||||||||||||||||
Sbjct: 275 gaacattgatgggctggatc 294



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>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA
            clone IMAGE:5061936), partial cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1580 atttttcttggaaaagaaaa 1561



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>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2
            (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 1 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 3 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630



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>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence
          Length = 167741

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttgcgaacattgatgggctg 42
             ||||||||||||||||||||
Sbjct: 55387 ttgcgaacattgatgggctg 55406



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>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence
          Length = 200790

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   atttttcttggaaaagaaaa 208
             ||||||||||||||||||||
Sbjct: 40220 atttttcttggaaaagaaaa 40239



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>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1,
             complete sequence
          Length = 122777

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gaatattatttttcttggaa 201
             ||||||||||||||||||||
Sbjct: 58941 gaatattatttttcttggaa 58922



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>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230117D02 product:progesterone
            receptor membrane component 2, full insert sequence
          Length = 2972

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1619 atttttcttggaaaagaaaa 1600



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>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched
           library, clone:G430007N18 product:progesterone receptor
           membrane component 2, full insert sequence
          Length = 1019

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 atttttcttggaaaagaaaa 208
           ||||||||||||||||||||
Sbjct: 822 atttttcttggaaaagaaaa 803



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>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4631434O19 product:MEMBRANE ASSOCIATED
            PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE
            BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog
            [Homo sapiens], full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  atttttcttggaaaagaaaa 208
            ||||||||||||||||||||
Sbjct: 1538 atttttcttggaaaagaaaa 1519



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>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence
          Length = 183088

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ttttcttggaaaagaaaaac 210
             ||||||||||||||||||||
Sbjct: 27202 ttttcttggaaaagaaaaac 27183



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>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
              sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    atattatttttcttggaaaagaaa 207
              |||||||||||||| |||||||||
Sbjct: 164789 atattatttttctttgaaaagaaa 164812


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,014,005
Number of Sequences: 3902068
Number of extensions: 3014005
Number of successful extensions: 54366
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54345
Number of HSP's gapped (non-prelim): 21
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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