>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 140 AEKRSLQLRALSG*TRLQSSKQ--MRDPILSTQRPSLFPVSPRLACRPGNLPSGA 298
           AE ++  LR      RL++S Q  + DP L   + S  P SPR A RP + PS +
Sbjct: 600 AEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSAS 654

>HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 46

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 250 RFASPRLSS-RQPTLRCISRWKHPDGSVRCCRRSRWIVLRRYPGHPCEQR 396
           R  SP  S  R+P  RC  R       +RCCRR R +  RRY    C ++
Sbjct: 4   RCRSPSQSRCRRPRRRCRRR-------IRCCRRQRRVCCRRYTTTRCARQ 46

>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = +1

Query: 82  RHKPACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVPRFAS 261
           R     RP  P     C +CG     +  AVG     V      + P HT ++ VP    
Sbjct: 4   RRMLCARPWGP-SCVVCALCGA-LAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPE 61

Query: 262 PRLSSRQPTLRCISRWKHPDGSV 330
           PR    QP+    +    P G+V
Sbjct: 62  PRAEGEQPSPLVPTALPVPGGAV 84

>RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)|
           (ADP-heptose--LPS heptosyltransferase II)
          Length = 348

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 VQATYPQVHFTVEAPGWICPLLS 341
           +QA YPQ    V AP W  PLLS
Sbjct: 24  LQARYPQAIIDVMAPAWCRPLLS 46

>HIS6_THET8 (Q7SIB9) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 252

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 287 VGCLDDRRGEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSSPHTSQLVVL 117
           V CLD   G   +G N V++    DP  A R          V +  S+ H  + ++L
Sbjct: 8   VPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILL 64

>HIS6_THET2 (P62453) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 252

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 287 VGCLDDRRGEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSSPHTSQLVVL 117
           V CLD   G   +G N V++    DP  A R          V +  S+ H  + ++L
Sbjct: 8   VPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILL 64

>GLYA2_PSEU2 (Q4ZM83) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 186 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVQATYPQVHFTVEAPGWICPLL 338
           A+   +K  +P+      V S  R+ +P V     +V   VE  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWICDIL 390

>GLYA2_PSE14 (Q48CP3) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 186 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVQATYPQVHFTVEAPGWICPLL 338
           A+   +K  +P+      V S  R+ +P V     +V   VE  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWICDIL 390

>MVIN_SYNY3 (Q55179) Virulence factor mviN homolog|
          Length = 533

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 LASPVVQATYPQVHFTVEAPGWICPLLSAFAV 353
           LA P+VQ  Y +  F  EA   + P+L+A+ +
Sbjct: 342 LAIPIVQVIYERGAFDAEAAAEVAPVLAAYGL 373

>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor|
          Length = 672

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 103 PAAPRKTTSCEVCGEEKPTITGAVGLNT 186
           PAA RK  S  VC +  P I   +GL T
Sbjct: 194 PAAKRKGGSMHVCCKRNPKIKNKIGLKT 221

>NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 508

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 300 NAPEGRLPGRQARRGETGNKLGLCVLRM 217
           +APEG+ P    R+G T N L  C + M
Sbjct: 289 SAPEGKAPANGLRQGNTKNVLLACPMNM 316

>NAS9_CAEEL (P91137) Zinc metalloproteinase nas-9 precursor (EC 3.4.24.21)|
           (Nematode astacin 9)
          Length = 546

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = +1

Query: 289 LRCISRWKHPDGSVRCCRRSRWIVLRRYPGHPCEQR 396
           LR ISR   P  S+   RR+R    RRYPGHP  QR
Sbjct: 86  LRGISRGPRPS-SMEWGRRARHFC-RRYPGHPKCQR 119

>GLYA1_PSESM (Q88AD1) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine|
           methylase 1) (SHMT 1)
          Length = 417

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 186 AYSPQSKCGIPS*AHRDQVCSPFRLASPVVQATYPQVHFTVEAPGWICPLL 338
           A+   +K  +P+      V S  R+ +P V     +V   +E  GWIC +L
Sbjct: 340 AHITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCIELAGWICDIL 390

>TRX_DROME (P20659) Protein trithorax|
          Length = 3726

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +1

Query: 34   RLMCTLTSYK****XRRHKPACRPAAPRKTTSCEVCGE---EKPTITGAVGLNTL-TVLK 201
            R  CT  +Y      +RH P+C P      T  +V G+      T   A  LN L   L 
Sbjct: 2265 RCQCTYRNYDA---FQRHLPSCSPTMSSNETESDVSGQGMTNNATQISAESLNELQKQLL 2321

Query: 202  ANAG 213
            ANAG
Sbjct: 2322 ANAG 2325

>RFAF_SALTY (P37421) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)|
           (ADP-heptose--LPS heptosyltransferase II)
          Length = 348

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 VQATYPQVHFTVEAPGWICPLLS 341
           ++A YPQ    V AP W  PLLS
Sbjct: 24  LKARYPQAIIDVMAPAWCRPLLS 46

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
 Frame = +1

Query: 103 PAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVP----RFASPRL 270
           P  P  TT  E C +     + A     L V  A AG+   H      P    RF+SPR+
Sbjct: 43  PPPPPGTTPTEYCHQMAFLASHASPYGELLVQSAAAGN-TSHLHDYLTPMDVSRFSSPRV 101

Query: 271 SSRQPTLRCISRWKHPDGSV 330
           + R    R +S     D S+
Sbjct: 102 TPRLSRKRALSISPLSDASI 121

>IDD_MOUSE (P98154) Integral membrane protein DGCR2/IDD precursor|
           (Seizure-related membrane-bound adhesion protein)
          Length = 548

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +1

Query: 91  PACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANA-GSHPKHTETKFVPRFASP- 264
           P C   +      C V GE +P      G  T+ + +  A G  P H  T  V   A P 
Sbjct: 55  PTCEDKSDE--ADCPVTGEARP-----YGKETVDLRQGRARGGDPTHFHTVNV---AQPV 104

Query: 265 RLSSRQPTLRCISRWKHPDGSVRCCR 342
           R SS     +C S W H +G+  C R
Sbjct: 105 RFSSFLG--KCPSGWHHYEGTASCYR 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,648,572
Number of Sequences: 219361
Number of extensions: 1095252
Number of successful extensions: 3230
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3229
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)