ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd17a06 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 134 bits (338), Expect(2) = 2e-37 Identities = 66/76 (86%), Positives = 69/76 (90%) Frame = -3 Query: 396 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 217 ARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVHGAIEVCA+LRPTVDIS Sbjct: 515 ARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDIS 574 Query: 216 VTADADFVRPELRQSA 169 V ADADFVRPELRQS+ Sbjct: 575 VPADADFVRPELRQSS 590 Score = 40.0 bits (92), Expect(2) = 2e-37 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -2 Query: 448 FMHARGVAFMVDNCSTTGPAG 386 FMHARGV+FMVDNCSTT G Sbjct: 498 FMHARGVSFMVDNCSTTARLG 518
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 133 bits (335), Expect(2) = 4e-37 Identities = 65/74 (87%), Positives = 68/74 (91%) Frame = -3 Query: 396 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 217 ARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVHGAI+VCAELRPT+DIS Sbjct: 505 ARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDIS 564 Query: 216 VTADADFVRPELRQ 175 V A ADFVRPELRQ Sbjct: 565 VPAAADFVRPELRQ 578 Score = 40.0 bits (92), Expect(2) = 4e-37 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -2 Query: 448 FMHARGVAFMVDNCSTTGPAG 386 FMHARGV+FMVDNCSTT G Sbjct: 488 FMHARGVSFMVDNCSTTARLG 508
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 132 bits (331), Expect(2) = 1e-36 Identities = 64/75 (85%), Positives = 69/75 (92%) Frame = -3 Query: 396 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 217 ARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH AI VCA+LRP+VDIS Sbjct: 521 ARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDIS 580 Query: 216 VTADADFVRPELRQS 172 VTADADFVRPELRQ+ Sbjct: 581 VTADADFVRPELRQA 595 Score = 40.0 bits (92), Expect(2) = 1e-36 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -2 Query: 448 FMHARGVAFMVDNCSTTGPAG 386 FMHARGV+FMVDNCSTT G Sbjct: 504 FMHARGVSFMVDNCSTTARLG 524
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 211 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 363 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 2.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 363 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 256 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>URE1_PROMM (Q7V3V2) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 574 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Frame = +1 Query: 7 IIREETETTHSINPNRGLSLPDTAAH---------RFKQLVARIHYSP*IVHPSKNNSSD 159 +I +T H + RG LP+ AA+ R K+ +A++ +P I H N+ Sbjct: 372 VITRTFQTAHKMKVQRG-PLPEDAANPRGSRNDNNRIKRYIAKVTINPAIAHGIDNHVGS 430 Query: 160 PNLGRLPEL 186 +G+L +L Sbjct: 431 VEVGKLADL 439
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 27.7 bits (60), Expect(2) = 2.7 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 133 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 237 HP+ + +DP L R P L H + G D GP Sbjct: 853 HPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGP 887 Score = 20.8 bits (42), Expect(2) = 2.7 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 327 PSQTPAGSGCSRSGAPTSSTPAGP 398 P+ P GS S P+SS +GP Sbjct: 897 PTSKPEGSLHSSPVGPSSSKGSGP 920
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.6 bits (65), Expect = 3.6 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 10/109 (9%) Frame = +2 Query: 35 TRSTPTGGSLYLTQQLTGSNS*SHAY----------ITVHELSTHQKTTLQTRI*ADCRS 184 T S G +T +T + + H Y + E S++ + T ++ + Sbjct: 94 TSSADEGSGSSITTTITATKN-GHVYTKTVTQDATFVWTGEGSSNTWSPSSTSTSSEAAT 152 Query: 185 SGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKLLMRSWLMGASLSTV 331 S + +A+ E S+ SS+ ++ +TG+ + + LMGA+L+ V Sbjct: 153 SSASTTATTTAETSSSATSSSTAELSSYTGAADAITAGTGLMGAALAAV 201
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 318 PCPPSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATP 434 P PPS+ AG S A T S GP+ Q + A P Sbjct: 849 PSPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAFP 887
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 318 PCPPSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATP 434 P PPS+ AG S A T S GP+ Q + A P Sbjct: 767 PRPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAVP 805
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 133 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 237 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896
>ALR_STRCO (O86786) Alanine racemase (EC 5.1.1.1)| Length = 391 Score = 28.9 bits (63), Expect = 6.2 Identities = 36/128 (28%), Positives = 47/128 (36%), Gaps = 13/128 (10%) Frame = +1 Query: 25 ETTHSINPNRGLSLPDTAAHRFKQLVARIHYSP*IVHPSKNNSSDPNLGRLPELRT---- 192 E H N L+LPD + +A SP P +D L + L Sbjct: 215 EVRHIANSPATLTLPDAHFDLVRPGIAMYGVSP---SPEIGTPADFGLRPVMTLAASLAL 271 Query: 193 -------HEVSIGRHRDVDGGPQLGADLDGAVDGV-RH-EVADEVLVDGRILVHRHKRLL 345 H VS G H G LG G DG+ RH + VLVDG+ + + Sbjct: 272 VKQVPGGHGVSYGHHYTTPGETTLGLVPLGYADGIPRHASSSGPVLVDGKWRTVAGRIAM 331 Query: 346 GQDVVEAG 369 Q VV+ G Sbjct: 332 DQFVVDLG 339
>URE1_SYNPV (O87402) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 569 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +1 Query: 7 IIREETETTHSINPNRGLSLPDTAA---HRFKQLVARIHYSP*IVHPSKNNSSDPNLGRL 177 +I +T H + RG D++ HR K+ +A++ +P + H + G+L Sbjct: 372 VITRTFQTAHKMKVQRGALPQDSSRNDNHRLKRYIAKVTINPALAHGISSEVGSIETGKL 431 Query: 178 PEL 186 +L Sbjct: 432 ADL 434
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/28 (46%), Positives = 13/28 (46%) Frame = +3 Query: 312 AHPCPPSQTPAGSGCSRSGAPTSSTPAG 395 A P S TPAGSG S P P G Sbjct: 780 AQGAPGSATPAGSGASTGSGPNGPVPLG 807
>SYS_CORGL (Q8NLP6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 422 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 211 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 363 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV++ Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVVVPEALRPFVGKDVLK 416
>URE1_SYNPX (Q7U3I3) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 569 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = +1 Query: 7 IIREETETTHSINPNRGLSLPDTAA----HRFKQLVARIHYSP*IVHPSKNNSSDPNLGR 174 +I +T H + RG +LP+ +A HR + +A++ +P + H + G+ Sbjct: 372 VITRTFQTAHKMKVQRG-ALPEDSARNDNHRLTRYIAKVTINPALAHGISSEVGSIETGK 430 Query: 175 LPEL 186 L +L Sbjct: 431 LADL 434
>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific protease) Length = 605 Score = 28.5 bits (62), Expect = 8.1 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = +2 Query: 89 SNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSG----RTKSASAVTEMSTVGLSSAQTS 256 S + +HA ++ +S H TT+ A CRS G T + S+VT MS+ S +TS Sbjct: 533 SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS---SQVRTS 589 Query: 257 MA 262 A Sbjct: 590 DA 591
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Frame = +3 Query: 318 PCPPSQTPAGSG----CSRSGAPTSSTPAGPVVEQLSTMKATPRACM 446 P P + PAG G S S A SS P G + Q S A PRA + Sbjct: 369 PPPSPRRPAGPGPLSFVSSSSAQVSSGPGGGGLPQSSGRAARPRAAV 415
>PIV6_ADEM1 (P48310) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 237 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Frame = -3 Query: 435 VGWPSWWTTARRRA--------RLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFM 280 +GW SWW+ R LG + W L Q KD + ++ + Sbjct: 34 LGWGSWWSNLSRLGSSFGSNLKNLGLKAWNSSTGQALRQHL-----KDTNLQHKVVEG-L 87 Query: 279 SDPVHGAIEVCAE 241 S +HGA+++ + Sbjct: 88 STGIHGAVDIARQ 100
>K0310_HUMAN (O15027) Protein KIAA0310| Length = 2179 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +3 Query: 318 PCPPSQTPAGSGCSRSGAPTSSTPA----GPVVEQLSTMKATPRA 440 PCP P+G C+ S P TP+ GP EQ S + A P A Sbjct: 53 PCPEGPVPSGVPCATS-VPHFPTPSILHQGPGHEQHSPLVAPPAA 96
>CB025_MOUSE (Q99LS1) Protein C2orf25 homolog, mitochondrial precursor| Length = 296 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = -3 Query: 366 RFDYILTQQAFVTVDKDAPINQDLIS---NFMSDPVHGAIEVCAEL 238 R ++++ Q D DAP+ Q++ S F S V AI+ C EL Sbjct: 111 RHEFVMAQYVNEFQDSDAPVEQEINSAETYFESAKVECAIQTCPEL 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,951,791 Number of Sequences: 219361 Number of extensions: 1253171 Number of successful extensions: 5264 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5256 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
