>COX1_COREF (Q8FMT1) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 580

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 347 LSCFGFWIVKTGFCGAITTLGPLSLGITSD*APTMFSATSDS 472
           L+ FGFWI   G  G     G L+ G  +D   TM+S  SDS
Sbjct: 122 LNAFGFWITTVG--GVAMLAGFLTPGGAADFGWTMYSPLSDS 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,678,727
Number of Sequences: 219361
Number of extensions: 1759477
Number of successful extensions: 4104
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4104
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)