ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AAT_AQUAE (O67781) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 36 0.033
2AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 35 0.056
3AAT_PYRAB (Q9V0L2) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 33 0.28
4AAT_THEMA (Q9X0Y2) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 32 0.47
5AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Tra... 31 0.81
6SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rel... 30 2.4
7AAT_SYNY3 (Q55128) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 29 4.0
8YBDL_ECOLI (P77806) Aminotransferase ybdL (EC 2.6.1.-) 29 4.0
9AAT_BACY2 (P23034) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 28 5.2
10MNB1A_MAIZE (P38564) Dof zinc finger protein MNB1A 28 5.2
11AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 28 5.2
12PATA_BACSU (P16524) Putative aminotransferase A (EC 2.6.1.-) 28 6.9
13MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7... 28 6.9
14AAT2_BACSU (P39643) Probable aspartate aminotransferase (EC 2.6.... 28 6.9
15TENS1_HUMAN (Q9HBL0) Tensin-1 28 9.0

>AAT_AQUAE (O67781) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 394

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = -3

Query: 157 DAVKGGEGAIYLW---AKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2
           D VK  EGA Y++   +   +    D ++  +L  K  VAV+PGSA G PG++R+
Sbjct: 318 DVVKP-EGAFYIFPDFSAYAEKLGGDVKLSEFLLEKAKVAVVPGSAFGAPGFLRL 371



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>AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 391

 Score = 35.0 bits (79), Expect = 0.056
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 151 VKGGEGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASG--GPGYIRV 2
           VK  +GA Y++  +        +   WL  K  V VIPG+A G  G GY+R+
Sbjct: 316 VKEPKGAFYVFPNISGTGMSSEKFSEWLLEKARVVVIPGTAFGRMGEGYVRI 367



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>AAT_PYRAB (Q9V0L2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 389

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASG--GPGYIRV 2
           +GA Y++ ++ D      E    +  +  VAV+PGSA G  G GY+R+
Sbjct: 316 KGAFYIFPRIKDTGLTSKEFSELMLMEAKVAVVPGSAFGKAGEGYVRI 363



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>AAT_THEMA (Q9X0Y2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 377

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -3

Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2
           EGA YL+ K+     DD +    L  +  VA++PGSA   PG++R+
Sbjct: 312 EGAFYLFFKVRG---DDVKFCERLLEEKKVALVPGSAFLKPGFVRL 354



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>AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 393

 Score = 31.2 bits (69), Expect = 0.81
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -3

Query: 139 EGAIYLWAKLPD---NC--KDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2
           EGA YL+    +   +C  KD  E V+ L  +  VA++PGS  G P  +R+
Sbjct: 319 EGAFYLFPNAKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENVRL 369



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>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +3

Query: 12  YPGPPLALPGITATPCLVASHLTTSKSSLQLS-------GSLAQR*MAPSPPL 149
           YP  P A    T TP L A+HLTTS S L L          L +R M PS PL
Sbjct: 302 YPSGPQAF---TQTP-LGANHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPL 350



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>AAT_SYNY3 (Q55128) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 389

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIR 5
           +GA Y++  +     +  E    L   H VAVIPG+A G    +R
Sbjct: 320 KGAFYVFVDIAKTGLNSLEFSARLLESHQVAVIPGAAFGADDCVR 364



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>YBDL_ECOLI (P77806) Aminotransferase ybdL (EC 2.6.1.-)|
          Length = 386

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 94  DDFEVVRWLATKHGVAVIP 38
           DD E  +WL  +HGVA IP
Sbjct: 333 DDVEFCQWLTQEHGVAAIP 351



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>AAT_BACY2 (P23034) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 392

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 139 EGAIYLWAKLPDNC-KDDF----EVVRWLATKHGVAVIPGSASGGPGYIRV 2
           +GA YL   + +   K  F    E    L T+  VAVIPGS  G P  IR+
Sbjct: 321 QGAFYLLPDVSEAAQKTGFASVDEFASALLTEANVAVIPGSGFGAPSTIRI 371



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>MNB1A_MAIZE (P38564) Dof zinc finger protein MNB1A|
          Length = 238

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 15  PGPPLAL---PGITATPCLVASHLTTSKSSLQLSGSLAQR*MAP 137
           P P LA    PG TAT     S +TT   +L+ S SLA   + P
Sbjct: 133 PAPELATAADPGKTATTTTTTSEITTETGALEDSDSLAHLLLQP 176



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>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (ASPAT)
          Length = 397

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 52  VAVIPGSASGGPGYIRV 2
           VAV+PG A G PGY+R+
Sbjct: 356 VAVVPGEAFGTPGYLRL 372



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>PATA_BACSU (P16524) Putative aminotransferase A (EC 2.6.1.-)|
          Length = 392

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 157 DAVKGGEGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGS--ASGGPGYIRV 2
           D VK   GA Y++  +       F+    L    GVA++PGS  ++ G GY+R+
Sbjct: 306 DVVKPS-GAFYIFPSIKSFGMTSFDFSMALLEDAGVALVPGSSFSTYGEGYVRL 358



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>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1)
          Length = 793

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -1

Query: 129 STSGLSYQITVKTILKLSDGSRPSTAXR*SPGAP------AEAPDTSAF 1
           STSG   ++T+ TI   S+  RP TA R    +P      A  PD + F
Sbjct: 556 STSGHPIKVTLPTIKDGSEAYRPGTAQRVPAASPSAHSISASTPDRTRF 604



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>AAT2_BACSU (P39643) Probable aspartate aminotransferase (EC 2.6.1.1)|
           (Transaminase A) (ASPAT)
          Length = 399

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPG 14
           +G  Y+WA++P+  +   +   +L     V V PG   G  G
Sbjct: 321 KGTFYVWAEIPNTFETSHQFSDYLLEHAHVVVTPGEIFGSNG 362



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>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 21  PPLALPGITATPCLVASHLTTSKS------SLQLSGSLAQR 125
           PP +LPG+TA P L     T+  S       L L G +A R
Sbjct: 835 PPASLPGLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHR 875


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,075,193
Number of Sequences: 219361
Number of extensions: 368158
Number of successful extensions: 1283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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