Clone Name | rbasd16k22 |
---|---|
Clone Library Name | barley_pub |
>AAT_AQUAE (O67781) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 394 Score = 35.8 bits (81), Expect = 0.033 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Frame = -3 Query: 157 DAVKGGEGAIYLW---AKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2 D VK EGA Y++ + + D ++ +L K VAV+PGSA G PG++R+ Sbjct: 318 DVVKP-EGAFYIFPDFSAYAEKLGGDVKLSEFLLEKAKVAVVPGSAFGAPGFLRL 371
>AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 391 Score = 35.0 bits (79), Expect = 0.056 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 151 VKGGEGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASG--GPGYIRV 2 VK +GA Y++ + + WL K V VIPG+A G G GY+R+ Sbjct: 316 VKEPKGAFYVFPNISGTGMSSEKFSEWLLEKARVVVIPGTAFGRMGEGYVRI 367
>AAT_PYRAB (Q9V0L2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 389 Score = 32.7 bits (73), Expect = 0.28 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASG--GPGYIRV 2 +GA Y++ ++ D E + + VAV+PGSA G G GY+R+ Sbjct: 316 KGAFYIFPRIKDTGLTSKEFSELMLMEAKVAVVPGSAFGKAGEGYVRI 363
>AAT_THEMA (Q9X0Y2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 377 Score = 32.0 bits (71), Expect = 0.47 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = -3 Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2 EGA YL+ K+ DD + L + VA++PGSA PG++R+ Sbjct: 312 EGAFYLFFKVRG---DDVKFCERLLEEKKVALVPGSAFLKPGFVRL 354
>AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 31.2 bits (69), Expect = 0.81 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -3 Query: 139 EGAIYLWAKLPD---NC--KDDFEVVRWLATKHGVAVIPGSASGGPGYIRV 2 EGA YL+ + +C KD E V+ L + VA++PGS G P +R+ Sbjct: 319 EGAFYLFPNAKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENVRL 369
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 29.6 bits (65), Expect = 2.4 Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 12 YPGPPLALPGITATPCLVASHLTTSKSSLQLS-------GSLAQR*MAPSPPL 149 YP P A T TP L A+HLTTS S L L L +R M PS PL Sbjct: 302 YPSGPQAF---TQTP-LGANHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPL 350
>AAT_SYNY3 (Q55128) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 389 Score = 28.9 bits (63), Expect = 4.0 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -3 Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPGYIR 5 +GA Y++ + + E L H VAVIPG+A G +R Sbjct: 320 KGAFYVFVDIAKTGLNSLEFSARLLESHQVAVIPGAAFGADDCVR 364
>YBDL_ECOLI (P77806) Aminotransferase ybdL (EC 2.6.1.-)| Length = 386 Score = 28.9 bits (63), Expect = 4.0 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 94 DDFEVVRWLATKHGVAVIP 38 DD E +WL +HGVA IP Sbjct: 333 DDVEFCQWLTQEHGVAAIP 351
>AAT_BACY2 (P23034) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 392 Score = 28.5 bits (62), Expect = 5.2 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -3 Query: 139 EGAIYLWAKLPDNC-KDDF----EVVRWLATKHGVAVIPGSASGGPGYIRV 2 +GA YL + + K F E L T+ VAVIPGS G P IR+ Sbjct: 321 QGAFYLLPDVSEAAQKTGFASVDEFASALLTEANVAVIPGSGFGAPSTIRI 371
>MNB1A_MAIZE (P38564) Dof zinc finger protein MNB1A| Length = 238 Score = 28.5 bits (62), Expect = 5.2 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 15 PGPPLAL---PGITATPCLVASHLTTSKSSLQLSGSLAQR*MAP 137 P P LA PG TAT S +TT +L+ S SLA + P Sbjct: 133 PAPELATAADPGKTATTTTTTSEITTETGALEDSDSLAHLLLQP 176
>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 397 Score = 28.5 bits (62), Expect = 5.2 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -3 Query: 52 VAVIPGSASGGPGYIRV 2 VAV+PG A G PGY+R+ Sbjct: 356 VAVVPGEAFGTPGYLRL 372
>PATA_BACSU (P16524) Putative aminotransferase A (EC 2.6.1.-)| Length = 392 Score = 28.1 bits (61), Expect = 6.9 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -3 Query: 157 DAVKGGEGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGS--ASGGPGYIRV 2 D VK GA Y++ + F+ L GVA++PGS ++ G GY+R+ Sbjct: 306 DVVKPS-GAFYIFPSIKSFGMTSFDFSMALLEDAGVALVPGSSFSTYGEGYVRL 358
>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase 1) Length = 793 Score = 28.1 bits (61), Expect = 6.9 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = -1 Query: 129 STSGLSYQITVKTILKLSDGSRPSTAXR*SPGAP------AEAPDTSAF 1 STSG ++T+ TI S+ RP TA R +P A PD + F Sbjct: 556 STSGHPIKVTLPTIKDGSEAYRPGTAQRVPAASPSAHSISASTPDRTRF 604
>AAT2_BACSU (P39643) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 399 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = -3 Query: 139 EGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASGGPG 14 +G Y+WA++P+ + + +L V V PG G G Sbjct: 321 KGTFYVWAEIPNTFETSHQFSDYLLEHAHVVVTPGEIFGSNG 362
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 27.7 bits (60), Expect = 9.0 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%) Frame = +3 Query: 21 PPLALPGITATPCLVASHLTTSKS------SLQLSGSLAQR 125 PP +LPG+TA P L T+ S L L G +A R Sbjct: 835 PPASLPGLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHR 875 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,075,193 Number of Sequences: 219361 Number of extensions: 368158 Number of successful extensions: 1283 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)