ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YBDL_ECOLI (P77806) Aminotransferase ybdL (EC 2.6.1.-) 29 4.1
2AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Tran... 29 4.1
3TENS1_HUMAN (Q9HBL0) Tensin-1 28 9.1

>YBDL_ECOLI (P77806) Aminotransferase ybdL (EC 2.6.1.-)|
          Length = 386

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 76  DDFEVVRWLATKHGVAVIP 20
           DD E  +WL  +HGVA IP
Sbjct: 333 DDVEFCQWLTQEHGVAAIP 351



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>AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 391

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 133 VKGGEGAIYLWAKLPDNCKDDFEVVRWLATKHGVAVIPGSASG 5
           VK  +GA Y++  +        +   WL  K  V VIPG+A G
Sbjct: 316 VKEPKGAFYVFPNISGTGMSSEKFSEWLLEKARVVVIPGTAFG 358



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>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 3   PPLALPGITATPCLVASHLTTSKS------SLQLSGSLAQR 107
           PP +LPG+TA P L     T+  S       L L G +A R
Sbjct: 835 PPASLPGLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHR 875


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,552,981
Number of Sequences: 219361
Number of extensions: 260637
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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