ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA 115 4e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 4e-23
3dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 115 4e-23
4dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 4e-23
5dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 4e-23
6gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital... 38 6.8
7gb|AC151425.22| Medicago truncatula clone mth2-4l6, complete seq... 38 6.8
8gb|AC152871.14| Medicago truncatula clone mth2-83e5, complete se... 38 6.8
9gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell... 38 6.8
10gb|DQ092790.1| Bovine enterovirus isolate D 3/98 polyprotein gen... 38 6.8
11gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, comple... 38 6.8
12gb|AE000657.1| Aquifex aeolicus VF5, complete genome 38 6.8 
>ref|NM_189523.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1733

 Score =  115 bits (58), Expect = 4e-23
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                        
Query: 3    cctccgctggcgctcccggggatcaccgcgacnccgtgcttggtcgcgagccatctgaca 62
            ||||| |||||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 1246 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1187

                                                                        
Query: 63   acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctcc 122
            ||||||||||| |||   || || || ||||| || ||||||||||| ||||||||||| 
Sbjct: 1186 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1127

                         
Query: 123  ccacccttgacag 135
            |||||||||||||
Sbjct: 1126 ccacccttgacag 1114
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 4e-23
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                           
Query: 3       cctccgctggcgctcccggggatcaccgcgacnccgtgcttggtcgcgagccatctgaca 62
               ||||| |||||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 4051372 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 4051431

                                                                           
Query: 63      acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctcc 122
               ||||||||||| |||   || || || ||||| || ||||||||||| ||||||||||| 
Sbjct: 4051432 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 4051491

                            
Query: 123     ccacccttgacag 135
               |||||||||||||
Sbjct: 4051492 ccacccttgacag 4051504
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score =  115 bits (58), Expect = 4e-23
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                         
Query: 3     cctccgctggcgctcccggggatcaccgcgacnccgtgcttggtcgcgagccatctgaca 62
             ||||| |||||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 18115 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 18174

                                                                         
Query: 63    acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctcc 122
             ||||||||||| |||   || || || ||||| || ||||||||||| ||||||||||| 
Sbjct: 18175 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 18234

                          
Query: 123   ccacccttgacag 135
             |||||||||||||
Sbjct: 18235 ccacccttgacag 18247
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>dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full
            insert sequence
          Length = 2063

 Score =  115 bits (58), Expect = 4e-23
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                        
Query: 3    cctccgctggcgctcccggggatcaccgcgacnccgtgcttggtcgcgagccatctgaca 62
            ||||| |||||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 1589 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1530

                                                                        
Query: 63   acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctcc 122
            ||||||||||| |||   || || || ||||| || ||||||||||| ||||||||||| 
Sbjct: 1529 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1470

                         
Query: 123  ccacccttgacag 135
            |||||||||||||
Sbjct: 1469 ccacccttgacag 1457
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>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full
            insert sequence
          Length = 1734

 Score =  115 bits (58), Expect = 4e-23
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                        
Query: 3    cctccgctggcgctcccggggatcaccgcgacnccgtgcttggtcgcgagccatctgaca 62
            ||||| |||||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 1247 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1188

                                                                        
Query: 63   acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctcc 122
            ||||||||||| |||   || || || ||||| || ||||||||||| ||||||||||| 
Sbjct: 1187 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1128

                         
Query: 123  ccacccttgacag 135
            |||||||||||||
Sbjct: 1127 ccacccttgacag 1115
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>gb|AC150577.4| Bos taurus  BAC CH240-268P24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167618

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 121    ccccacccttgacagcatc 139
              |||||||||||||||||||
Sbjct: 119869 ccccacccttgacagcatc 119887
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>gb|AC151425.22| Medicago truncatula clone mth2-4l6, complete sequence
          Length = 122088

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    catctgacaacttcaaaat 72
             |||||||||||||||||||
Sbjct: 99414 catctgacaacttcaaaat 99432
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>gb|AC152871.14| Medicago truncatula clone mth2-83e5, complete sequence
          Length = 103622

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    catctgacaacttcaaaat 72
             |||||||||||||||||||
Sbjct: 93484 catctgacaacttcaaaat 93502
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>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163700

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 51    agccatctgacaacttcaaaatc 73
             |||| ||||||||||||||||||
Sbjct: 96910 agccttctgacaacttcaaaatc 96932
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>gb|DQ092790.1| Bovine enterovirus isolate D 3/98 polyprotein gene, partial cds
          Length = 3404

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 107 gtagatggcaccctccccaccct 129
           ||||||||||||| |||||||||
Sbjct: 193 gtagatggcaccccccccaccct 215
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>gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, complete sequence
          Length = 199207

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 123   ccacccttgacagcatcct 141
             |||||||||||||||||||
Sbjct: 97802 ccacccttgacagcatcct 97784
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 63      acttcaaaatcgtctttac 81
               |||||||||||||||||||
Sbjct: 1403403 acttcaaaatcgtctttac 1403421


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 848,381
Number of Sequences: 3902068
Number of extensions: 848381
Number of successful extensions: 66191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66140
Number of HSP's gapped (non-prelim): 46
length of query: 143
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 122
effective length of database: 17,151,101,840
effective search space: 2092434424480
effective search space used: 2092434424480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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