>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform 1,
cardiac muscle) (Smooth muscle calcium channel blocker
receptor)
Length = 2171
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 387 CLGPGHSHRKXGWPHQVIPELRLTGASLTWRLLS--PLLH 274
C P + GWP Q IP LRL GA + +L S P +H
Sbjct: 1982 CATPPATPGSRGWPPQPIPTLRLEGADSSEKLNSSFPSIH 2021
>GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog|
Length = 745
Score = 28.9 bits (63), Expect = 6.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 398 AATHAWGQVIVTAXWDGHIRSFQNY 324
AA+H W V+V A +GH+++ ++Y
Sbjct: 387 AASHLWQLVVVRADLNGHLKALKDY 411
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,122,593
Number of Sequences: 219361
Number of extensions: 1077556
Number of successful extensions: 2050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)