ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel al... 30 2.2
2CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2 30 3.8
3GUNB_PAELA (P23550) Endoglucanase B precursor (EC 3.2.1.4) (Endo... 29 6.4
4GCP4_MEDTR (Q9SC88) Gamma-tubulin complex component 4 homolog 29 6.4
5GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog 29 6.4

>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.2)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 1,
            cardiac muscle) (Smooth muscle calcium channel blocker
            receptor)
          Length = 2171

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 387  CLGPGHSHRKXGWPHQVIPELRLTGASLTWRLLS--PLLH 274
            C  P  +    GWP Q IP LRL GA  + +L S  P +H
Sbjct: 1982 CATPPATPGSRGWPPQPIPTLRLEGADSSEKLNSSFPSIH 2021



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>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2|
          Length = 1208

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 44   QPRKRAWLLLQQHRRCWRDLGGPPGLHTTYGPQACXHK 157
            Q  +RA +L+QQH R +R   GPP  H   GP    +K
Sbjct: 1128 QQSRRAAVLIQQHYRSYRRRPGPP--HRPSGPLPARNK 1163



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>GUNB_PAELA (P23550) Endoglucanase B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase B) (Cellulase B) (EG-B)
          Length = 566

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 446 TLRKSQYKFLKASXQNAATHAWGQVIVTAXWDGHIRSFQNY 324
           TL +   +  K   QN A   +  + +   WD HI +  NY
Sbjct: 62  TLARGNPRITKELIQNIAAQGYKSIRIPVTWDSHIGAAPNY 102



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>GCP4_MEDTR (Q9SC88) Gamma-tubulin complex component 4 homolog|
          Length = 739

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 398 AATHAWGQVIVTAXWDGHIRSFQNY 324
           AA+H W  V+V A  +GH+++ ++Y
Sbjct: 370 AASHLWQLVVVRADLNGHLKALKDY 394



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>GCP4_ARATH (Q9M350) Gamma-tubulin complex component 4 homolog|
          Length = 745

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 398 AATHAWGQVIVTAXWDGHIRSFQNY 324
           AA+H W  V+V A  +GH+++ ++Y
Sbjct: 387 AASHLWQLVVVRADLNGHLKALKDY 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,122,593
Number of Sequences: 219361
Number of extensions: 1077556
Number of successful extensions: 2050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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