ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF104258.1|AF104258 Festuca rubra putative copper-inducible 3... 214 2e-52
2gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 1e-25
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
6dbj|AK103356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
7dbj|AK103522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
8ref|NM_187554.1| Oryza sativa (japonica cultivar-group), predic... 72 2e-09
9gb|AY112342.1| Zea mays CL10331_1 mRNA sequence 56 1e-04
10gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence 42 1.6
11emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 i... 42 1.6
12gb|AE005682.1| Caulobacter crescentus CB15 section 8 of 359 of t... 42 1.6
13gb|AC122532.4| Mus musculus BAC clone RP24-538A10 from chromosom... 40 6.2
14emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chr... 40 6.2
15gb|AC073971.4| Homo sapiens BAC clone RP11-168G24 from 2, comple... 40 6.2
16gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, comple... 40 6.2
17gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete... 40 6.2 
>gb|AF104258.1|AF104258 Festuca rubra putative copper-inducible 35.6 kDa protein (Pmc733)
            mRNA, complete cds
          Length = 1754

 Score =  214 bits (108), Expect = 2e-52
 Identities = 140/152 (92%)
 Strand = Plus / Minus

                                                                        
Query: 300  atgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccanct 359
            |||||||| |||||||||  |||| |||||||||||||||||||||||||||||||| ||
Sbjct: 1333 atgtcaaaattgcaccggcaagccatagttctggaatgacctgatgtggccatcccagct 1274

                                                                        
Query: 360  tgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttcag 419
            |||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1273 tgcactgactatgacctggccccaggcatgtgtagctgcattctggcaagacgccttcag 1214

                                            
Query: 420  gaacttgtactgcgatttacgcaacgtanatg 451
            |||||||||||| ||||||||||| ||| |||
Sbjct: 1213 gaacttgtactgagatttacgcaatgtagatg 1182



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/54 (92%), Gaps = 2/54 (3%)
 Strand = Plus / Minus

                                                                  
Query: 119  ctacatacaacttatggtccacaagcatgttancacaagaaaccagncatgtga 172
            |||||||||||||||||| ||||||||||||| |||||| |||||| |||||||
Sbjct: 1544 ctacatacaacttatggt-cacaagcatgttagcacaag-aaccagccatgtga 1493
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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0056G13, complete sequence
          Length = 148011

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
            |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 9845 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 9786

                                                                        
Query: 358  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
            | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 9785 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 9726

                                
Query: 418  aggaacttgtactgcgattt 437
            |||||||||||||| |||||
Sbjct: 9725 aggaacttgtactgagattt 9706



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 98    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
             ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 10031 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 9984
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                          
Query: 298    ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
              |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 853310 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853251

                                                                          
Query: 358    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
              | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 853250 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853191

                                  
Query: 418    aggaacttgtactgcgattt 437
              |||||||||||||| |||||
Sbjct: 853190 aggaacttgtactgagattt 853171



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 98     gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853496 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853449
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                          
Query: 298    ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
              |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 853308 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853249

                                                                          
Query: 358    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
              | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 853248 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853189

                                  
Query: 418    aggaacttgtactgcgattt 437
              |||||||||||||| |||||
Sbjct: 853188 aggaacttgtactgagattt 853169



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 98     gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853494 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853447
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10,
              complete sequence
          Length = 162132

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                          
Query: 298    ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
              |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 148855 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 148796

                                                                          
Query: 358    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
              | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 148795 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 148736

                                  
Query: 418    aggaacttgtactgcgattt 437
              |||||||||||||| |||||
Sbjct: 148735 aggaacttgtactgagattt 148716



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 98     gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 149041 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 148994
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>dbj|AK103356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126K20, full
            insert sequence
          Length = 4064

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
            |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 2534 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2475

                                                                        
Query: 358  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
            | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 2474 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2415

                                
Query: 418  aggaacttgtactgcgattt 437
            |||||||||||||| |||||
Sbjct: 2414 aggaacttgtactgagattt 2395



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 98   gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2720 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2673
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>dbj|AK103522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131K03, full
            insert sequence
          Length = 3088

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccatgtcaaacttgcaccggtnagccgtagttctggaatgacctgatgtggccatcccan 357
            |||||||| |||||||| ||| |||| ||||||||||| || ||||||| ||||||||| 
Sbjct: 2535 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2476

                                                                        
Query: 358  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctgncaagacgccttc 417
            | ||| |  ||||| |||||||||||||| || || || |||||||| ||||| ||||||
Sbjct: 2475 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2416

                                
Query: 418  aggaacttgtactgcgattt 437
            |||||||||||||| |||||
Sbjct: 2415 aggaacttgtactgagattt 2396



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 98   gatcttggaggaccacccgggctacatacaacttatggtccacaagca 145
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2721 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2674
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>ref|NM_187554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2328

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 375  ctggccccaggcatgtgtggctgcattctgncaagacgccttcaggaacttgtactgcga 434
            |||||||||||| || || || |||||||| ||||| |||||||||||||||||||| ||
Sbjct: 2160 ctggccccaggcgtgcgtagcagcattctggcaagaagccttcaggaacttgtactgaga 2101

               
Query: 435  ttt 437
            |||
Sbjct: 2100 ttt 2098
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>gb|AY112342.1| Zea mays CL10331_1 mRNA sequence
          Length = 630

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 314 ccggtnagccgtagttctggaatgacctgatgtggccatcccancttgcggtgactat 371
           ||||| |||| ||||||||||| |||||||| | ||||||||| | ||| ||||||||
Sbjct: 488 ccggtaagccatagttctggaacgacctgatcttgccatcccatcctgcagtgactat 545
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>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence
          Length = 140345

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     gaagagggcctggctactgct 72
              |||||||||||||||||||||
Sbjct: 123138 gaagagggcctggctactgct 123158
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>emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 in linkage group 3,
             complete sequence
          Length = 173019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 321   gccgtagttctggaatgacctgatg 345
             ||||||||||||||||||| |||||
Sbjct: 50046 gccgtagttctggaatgacatgatg 50070
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>gb|AE005682.1| Caulobacter crescentus CB15 section 8 of 359 of the complete genome
          Length = 10272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 47   ccaaggaagagggcctggctactgc 71
            ||||||||||||||| |||||||||
Sbjct: 5283 ccaaggaagagggcccggctactgc 5307
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>gb|AC122532.4| Mus musculus BAC clone RP24-538A10 from chromosome 5, complete sequence
          Length = 174724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   cctggccccaggcatgtgtg 393
             ||||||||||||||||||||
Sbjct: 45042 cctggccccaggcatgtgtg 45061
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>emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chromosome 13 Contains the
             3' end of a novel gene (KIAA1165) (likely ortholog of
             mouse Nedd4 WW domain-binding protein 5A) and a novel
             gene, complete sequence
          Length = 157695

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   cgccccttctggtgaagcaa 282
             ||||||||||||||||||||
Sbjct: 66707 cgccccttctggtgaagcaa 66688
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>gb|AC073971.4| Homo sapiens BAC clone RP11-168G24 from 2, complete sequence
          Length = 86077

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tacaacttatggtccacaag 143
             ||||||||||||||||||||
Sbjct: 24442 tacaacttatggtccacaag 24423
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>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence
          Length = 83528

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   cctggccccaggcatgtgtg 393
             ||||||||||||||||||||
Sbjct: 33565 cctggccccaggcatgtgtg 33546
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>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence
          Length = 190066

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 339   cctgatgtggccatcccancttg 361
             |||||||||||||||||| ||||
Sbjct: 67205 cctgatgtggccatcccaacttg 67227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,383,684
Number of Sequences: 3902068
Number of extensions: 2383684
Number of successful extensions: 40144
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40086
Number of HSP's gapped (non-prelim): 57
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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