ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF104258.1|AF104258 Festuca rubra putative copper-inducible 3... 347 3e-92
2gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 143 8e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 8e-31
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
5gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 143 8e-31
6dbj|AK103356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 8e-31
7dbj|AK103522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 8e-31
8ref|NM_187554.1| Oryza sativa (japonica cultivar-group), predic... 88 4e-14
9gb|AY112342.1| Zea mays CL10331_1 mRNA sequence 60 1e-05
10gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosom... 42 2.2
11gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, com... 42 2.2
12gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complet... 42 2.2
13gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence 42 2.2
14emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 i... 42 2.2
15gb|AE005682.1| Caulobacter crescentus CB15 section 8 of 359 of t... 42 2.2
16gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome... 42 2.2
17emb|CT025526.12| Mouse DNA sequence from clone RP23-218O15 on ch... 42 2.2
18gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 8.9
19ref|XM_615341.2| PREDICTED: Bos taurus similar to dystonin isofo... 40 8.9
20emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 i... 40 8.9
21gb|AC122532.4| Mus musculus BAC clone RP24-538A10 from chromosom... 40 8.9
22gb|AE014075.1| Escherichia coli CFT073, complete genome 40 8.9
23gb|CP000243.1| Escherichia coli UTI89, complete genome 40 8.9
24gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 8.9
25emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chr... 40 8.9
26gb|L19201.1|ECOUW87 E. coli chromosomal region from 87.2 to 89.2... 40 8.9
27dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 8.9
28gb|AC093110.4| Homo sapiens BAC clone RP11-564H16 from 2, comple... 40 8.9
29gb|AC073971.4| Homo sapiens BAC clone RP11-168G24 from 2, comple... 40 8.9
30gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, comple... 40 8.9
31gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 8.9
32emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chr... 40 8.9
33dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, or... 40 8.9
34gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 8.9
35dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 8.9
36gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 8.9
37gb|CP000036.1| Shigella boydii Sb227, complete genome 40 8.9
38gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 8.9
39gb|L04757.1|ECOFPR Escherichia coli ferredoxin (flavodoxin) NADP... 40 8.9 
>gb|AF104258.1|AF104258 Festuca rubra putative copper-inducible 35.6 kDa protein (Pmc733)
            mRNA, complete cds
          Length = 1754

 Score =  347 bits (175), Expect = 3e-92
 Identities = 235/255 (92%)
 Strand = Plus / Minus

                                                                        
Query: 319  atgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccagct 378
            |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1333 atgtcaaaattgcaccggcaagccatagttctggaatgacctgatgtggccatcccagct 1274

                                                                        
Query: 379  tgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttcag 438
            |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1273 tgcactgactatgacctggccccaggcatgtgtagctgcattctggcaagacgccttcag 1214

                                                                        
Query: 439  gaacttgtactgcgatttacgcaacgtagatgccgtcgctgagttggacgccagatgctc 498
            |||||||||||| ||||||||||| ||||||| || | |||||||||||| ||| |||||
Sbjct: 1213 gaacttgtactgagatttacgcaatgtagatgtcgccactgagttggacggcagctgctc 1154

                                                                        
Query: 499  ctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgctaagagt 558
            ||| ||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1153 ctctggccatgtagctgttccccttggagcagactccgcaaagaacgccctgctaagagt 1094

                           
Query: 559  gaaattgcccgatgg 573
            ||| ||||| |||||
Sbjct: 1093 gaagttgccagatgg 1079



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 52/54 (96%), Gaps = 2/54 (3%)
 Strand = Plus / Minus

                                                                  
Query: 138  ctacatacaacttatggtccacaagcatgttagcacaagaaaccagccatgtga 191
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 1544 ctacatacaacttatggtc-acaagcatgttagcacaag-aaccagccatgtga 1493
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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0056G13, complete sequence
          Length = 148011

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 317  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 9845 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 9786

                                                                        
Query: 377  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 9785 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 9726

                                
Query: 437  aggaacttgtactgcgattt 456
            |||||||||||||| |||||
Sbjct: 9725 aggaacttgtactgagattt 9706



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 494  tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
            |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 9668 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 9609

                                
Query: 554  agagtgaaattgcccgatgg 573
            ||||||||||| || |||||
Sbjct: 9608 agagtgaaatttccagatgg 9589



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 117   gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
             ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 10031 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 9984
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 317    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 853310 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853251

                                                                          
Query: 377    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 853250 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853191

                                  
Query: 437    aggaacttgtactgcgattt 456
              |||||||||||||| |||||
Sbjct: 853190 aggaacttgtactgagattt 853171



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 494    tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
              |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 853133 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 853074

                                  
Query: 554    agagtgaaattgcccgatgg 573
              ||||||||||| || |||||
Sbjct: 853073 agagtgaaatttccagatgg 853054



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 117    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853496 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853449
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 317    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 853308 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853249

                                                                          
Query: 377    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 853248 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853189

                                  
Query: 437    aggaacttgtactgcgattt 456
              |||||||||||||| |||||
Sbjct: 853188 aggaacttgtactgagattt 853169



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 494    tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
              |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 853131 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 853072

                                  
Query: 554    agagtgaaattgcccgatgg 573
              ||||||||||| || |||||
Sbjct: 853071 agagtgaaatttccagatgg 853052



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 117    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853494 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853447
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10,
              complete sequence
          Length = 162132

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 317    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 148855 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 148796

                                                                          
Query: 377    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 148795 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 148736

                                  
Query: 437    aggaacttgtactgcgattt 456
              |||||||||||||| |||||
Sbjct: 148735 aggaacttgtactgagattt 148716



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 494    tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
              |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 148678 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 148619

                                  
Query: 554    agagtgaaattgcccgatgg 573
              ||||||||||| || |||||
Sbjct: 148618 agagtgaaatttccagatgg 148599



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 117    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 149041 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 148994
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>dbj|AK103356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126K20, full
            insert sequence
          Length = 4064

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 317  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 2534 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2475

                                                                        
Query: 377  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 2474 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2415

                                
Query: 437  aggaacttgtactgcgattt 456
            |||||||||||||| |||||
Sbjct: 2414 aggaacttgtactgagattt 2395



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 494  tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
            |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 2357 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 2298

                                
Query: 554  agagtgaaattgcccgatgg 573
            ||||||||||| || |||||
Sbjct: 2297 agagtgaaatttccagatgg 2278



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 117  gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2720 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2673
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>dbj|AK103522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131K03, full
            insert sequence
          Length = 3088

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 317  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 376
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 2535 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2476

                                                                        
Query: 377  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 436
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 2475 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2416

                                
Query: 437  aggaacttgtactgcgattt 456
            |||||||||||||| |||||
Sbjct: 2415 aggaacttgtactgagattt 2396



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 494  tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
            |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 2358 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 2299

                                
Query: 554  agagtgaaattgcccgatgg 573
            ||||||||||| || |||||
Sbjct: 2298 agagtgaaatttccagatgg 2279



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 117  gatcttggaggaccacccgggctacatacaacttatggtccacaagca 164
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2721 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2674
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>ref|NM_187554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2328

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 494  tgctcctccggccacgtggctgatccccttggagcagactccgcaaggaacgccctgcta 553
            |||||||| ||||| || |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct: 2060 tgctcctctggccatgtcgctgatccccttggagcagattccgcaaagaaggcactgcta 2001

                                
Query: 554  agagtgaaattgcccgatgg 573
            ||||||||||| || |||||
Sbjct: 2000 agagtgaaatttccagatgg 1981



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 394  ctggccccaggcatgtgtggctgcattctggcaagacgccttcaggaacttgtactgcga 453
            |||||||||||| || || || |||||||||||||| |||||||||||||||||||| ||
Sbjct: 2160 ctggccccaggcgtgcgtagcagcattctggcaagaagccttcaggaacttgtactgaga 2101

               
Query: 454  ttt 456
            |||
Sbjct: 2100 ttt 2098
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>gb|AY112342.1| Zea mays CL10331_1 mRNA sequence
          Length = 630

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 333 ccggtaagccgtagttctggaatgacctgatgtggccatcccagcttgcggtgactat 390
           |||||||||| ||||||||||| |||||||| | ||||||||| | ||| ||||||||
Sbjct: 488 ccggtaagccatagttctggaacgacctgatcttgccatcccatcctgcagtgactat 545
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>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete sequence
          Length = 194560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 232   caagctccagccagccaggcttctt 256
             ||||||||||||||||||| |||||
Sbjct: 24267 caagctccagccagccagggttctt 24291
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>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 592   gtcttcaaggcaatcttcagt 612
             |||||||||||||||||||||
Sbjct: 71543 gtcttcaaggcaatcttcagt 71523
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>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 592   gtcttcaaggcaatcttcagt 612
             |||||||||||||||||||||
Sbjct: 89341 gtcttcaaggcaatcttcagt 89321
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>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence
          Length = 140345

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     gaagagggcctggctactgct 91
              |||||||||||||||||||||
Sbjct: 123138 gaagagggcctggctactgct 123158
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>emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 in linkage group 3,
             complete sequence
          Length = 173019

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 340   gccgtagttctggaatgacctgatg 364
             ||||||||||||||||||| |||||
Sbjct: 50046 gccgtagttctggaatgacatgatg 50070
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>gb|AE005682.1| Caulobacter crescentus CB15 section 8 of 359 of the complete genome
          Length = 10272

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 66   ccaaggaagagggcctggctactgc 90
            ||||||||||||||| |||||||||
Sbjct: 5283 ccaaggaagagggcccggctactgc 5307
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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 232   caagctccagccagccaggcttctt 256
             ||||||||||||||||||| |||||
Sbjct: 67791 caagctccagccagccagggttctt 67767
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>emb|CT025526.12| Mouse DNA sequence from clone RP23-218O15 on chromosome 9, complete
            sequence
          Length = 41330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 595  ttcaaggcaatcttcagtctg 615
            |||||||||||||||||||||
Sbjct: 2697 ttcaaggcaatcttcagtctg 2677
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4128845 aagaaaccagccatgtgatg 4128826
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>ref|XM_615341.2| PREDICTED: Bos taurus similar to dystonin isoform a (LOC535297), mRNA
          Length = 23670

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   tcaagctccagccagccagg 250
             ||||||||||||||||||||
Sbjct: 11416 tcaagctccagccagccagg 11435
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>emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 in linkage group 6,
              complete sequence
          Length = 223513

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     gcatcgtcgttgctggcggg 117
              ||||||||||||||||||||
Sbjct: 109466 gcatcgtcgttgctggcggg 109447
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>gb|AC122532.4| Mus musculus BAC clone RP24-538A10 from chromosome 5, complete sequence
          Length = 174724

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   cctggccccaggcatgtgtg 412
             ||||||||||||||||||||
Sbjct: 45042 cctggccccaggcatgtgtg 45061
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4633520 aagaaaccagccatgtgatg 4633501
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4390824 aagaaaccagccatgtgatg 4390805
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4111885 aagaaaccagccatgtgatg 4111866
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>emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chromosome 13 Contains the
             3' end of a novel gene (KIAA1165) (likely ortholog of
             mouse Nedd4 WW domain-binding protein 5A) and a novel
             gene, complete sequence
          Length = 157695

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   cgccccttctggtgaagcaa 301
             ||||||||||||||||||||
Sbjct: 66707 cgccccttctggtgaagcaa 66688
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>gb|L19201.1|ECOUW87 E. coli chromosomal region from 87.2 to 89.2 minutes
          Length = 96484

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   aagaaaccagccatgtgatg 193
             ||||||||||||||||||||
Sbjct: 75495 aagaaaccagccatgtgatg 75476
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 3522819 aagaaaccagccatgtgatg 3522838
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>gb|AC093110.4| Homo sapiens BAC clone RP11-564H16 from 2, complete sequence
          Length = 168550

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ccagccagccaggcttcttg 257
              ||||||||||||||||||||
Sbjct: 129662 ccagccagccaggcttcttg 129681
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>gb|AC073971.4| Homo sapiens BAC clone RP11-168G24 from 2, complete sequence
          Length = 86077

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   tacaacttatggtccacaag 162
             ||||||||||||||||||||
Sbjct: 24442 tacaacttatggtccacaag 24423
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>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence
          Length = 83528

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   cctggccccaggcatgtgtg 412
             ||||||||||||||||||||
Sbjct: 33565 cctggccccaggcatgtgtg 33546
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 3644374 aagaaaccagccatgtgatg 3644393
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>emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chromosome 4, complete
             sequence
          Length = 68939

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   agcacaagaaaccagccatgtgat 192
             ||||||||||||||| ||||||||
Sbjct: 29566 agcacaagaaaccagacatgtgat 29543
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>dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, orf5, orf6 genes for
            putative DNA binding protein, arthrofactin synthetase A,
            arthrofactin synthetase B, arthrofactin synthetase C,
            putative periplasmic protein, putative ABC transporter
            protein, complete and partial cds
          Length = 40430

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  ccttggagcagactccgcaa 539
            ||||||||||||||||||||
Sbjct: 6143 ccttggagcagactccgcaa 6162
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4982585 aagaaaccagccatgtgatg 4982566
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4913821 aagaaaccagccatgtgatg 4913802
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 3556835 aagaaaccagccatgtgatg 3556854
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 3967437 aagaaaccagccatgtgatg 3967418
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     aagaaaccagccatgtgatg 193
               ||||||||||||||||||||
Sbjct: 4327903 aagaaaccagccatgtgatg 4327884
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>gb|L04757.1|ECOFPR Escherichia coli ferredoxin (flavodoxin) NADP+ reductase (fpr)
           gene, complete cds
          Length = 878

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 aagaaaccagccatgtgatg 193
           ||||||||||||||||||||
Sbjct: 655 aagaaaccagccatgtgatg 674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,150,532
Number of Sequences: 3902068
Number of extensions: 4150532
Number of successful extensions: 78198
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77645
Number of HSP's gapped (non-prelim): 551
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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