Clone Information

BLAST Search Result

Clone Name	rbasd16k14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	222	1e-54
2	gb\|AC134769.1\| Genomic sequence for Oryza sativa, Nipponbare str...	222	1e-54
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
4	dbj\|AK100355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	1e-54
5	gb\|BT024017.1\| Zea mays clone EL01N0401A06 mRNA sequence	90	1e-14
6	gb\|AY111561.1\| Zea mays CL1285_-2 mRNA sequence	86	2e-13
7	emb\|AL391427.9\| Human DNA sequence from clone RP11-499O7 on chro...	46	0.15
8	gb\|AF516145.1\| Lyngbya majuscula barbamide biosynthesis gene clu...	46	0.15
9	gb\|AC105426.4\| Homo sapiens BAC clone RP11-794N18 from 4, comple...	44	0.60
10	gb\|AC139156.3\| Mus musculus BAC clone RP24-115J20 from chromosom...	42	2.4
11	gb\|AC131796.2\| Mus musculus BAC clone RP24-493L24 from chromosom...	42	2.4
12	emb\|CR933563.5\| Wallaby DNA sequence from clone MEKBa-325O12, co...	42	2.4
13	emb\|AL158015.9\| Human DNA sequence from clone RP11-195N11 on chr...	42	2.4
14	gb\|AC134516.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.4
15	gb\|AC073587.6\| Homo sapiens chromosome 10 clone RP11-572P18, com...	42	2.4
16	gb\|AC116926.1\| Genomic sequence for Oryza sativa (japonica culti...	42	2.4
17	gb\|AC113338.1\| Oryza sativa (japonica cultivar-group) cultivar N...	42	2.4
18	gb\|AC039057.8\|AC039057 Homo sapiens chromosome 15 clone RP11-81G...	42	2.4
19	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
20	gb\|AC068466.4\| Homo sapiens chromosome 8, clone RP11-370A22, com...	42	2.4
21	emb\|AL935145.12\| Zebrafish DNA sequence from clone CH211-173B9 i...	42	2.4
22	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.4
23	ref\|XM_632320.1\| Dictyostelium discoideum hypothetical protein (...	40	9.3
24	gb\|AC150408.2\| Branchiostoma floridae clone CH302-56A5, complete...	40	9.3
25	gb\|AC134443.3\| Mus musculus BAC clone RP24-107B13 from chromosom...	40	9.3
26	gb\|AC154457.2\| Mus musculus BAC clone RP24-159K2 from chromosome...	40	9.3
27	gb\|AC100539.12\| Mus musculus chromosome 1, clone RP23-152E3, com...	40	9.3
28	gb\|AC115797.16\| Mus musculus chromosome 17, clone RP23-405J10, c...	40	9.3
29	gb\|AC073486.5\| Homo sapiens BAC clone RP11-807H17 from 7, comple...	40	9.3
30	gb\|AC136903.6\| Mus musculus chromosome 9, clone RP23-475J16, com...	40	9.3
31	gb\|AC161243.2\| Mus musculus BAC clone RP24-241A8 from chromosome...	40	9.3
32	emb\|AL590613.6\| Human DNA sequence from clone RP11-164G6 on chro...	40	9.3
33	emb\|AL390957.14\| Human DNA sequence from clone RP11-417A21 on ch...	40	9.3
34	emb\|AL355596.21\| Human DNA sequence from clone RP11-63E9 on chro...	40	9.3
35	emb\|AL159155.8\| Human DNA sequence from clone RP11-46I10 on chro...	40	9.3
36	emb\|AL139348.3\| Human DNA sequence from clone RP11-151E14 on chr...	40	9.3
37	gb\|AY129950.1\| Homo sapiens cAMP-specific phosphodiesterase 8B (...	40	9.3
38	emb\|BX323793.10\| Zebrafish DNA sequence from clone DKEY-185P18 i...	40	9.3
39	emb\|AL845307.29\| Zebrafish DNA sequence from clone DKEY-56N17 in...	40	9.3
40	gb\|AC092948.6\| Homo sapiens 3 BAC RP11-536F13 (Roswell Park Canc...	40	9.3
41	gb\|AC105345.3\| Homo sapiens BAC clone RP11-689P11 from 4, comple...	40	9.3
42	emb\|BX537326.9\| Zebrafish DNA sequence from clone DKEY-4I23 in l...	40	9.3
43	gb\|AC084091.5\| Homo sapiens chromosome 8, clone CTD-2532E22, com...	40	9.3
44	gb\|AC160395.2\| Mus musculus BAC clone RP23-36C19 from chromosome...	40	9.3
45	ref\|XM_694478.1\| PREDICTED: Danio rerio similar to LOC446284 pro...	40	9.3
46	gb\|AC021000.9\| Homo sapiens chromosome 8, clone RP11-381I2, comp...	40	9.3
47	ref\|XM_689281.1\| PREDICTED: Danio rerio similar to tubby like pr...	40	9.3
48	tpg\|BK000629.1\| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) g...	40	9.3
49	gb\|AC119873.38\| Mus musculus chromosome 3, clone RP24-275F18, co...	40	9.3
50	gb\|AC116643.11\| Homo sapiens BAC clone RP11-637J21 from 4, compl...	40	9.3
51	gb\|AC022414.8\| Homo sapiens chromosome 5 clone CTC-316M18, compl...	40	9.3
52	gb\|AC107815.11\| Mus musculus chromosome 7, clone RP23-114A6, com...	40	9.3
53	emb\|BX890562.8\| Zebrafish DNA sequence from clone CH211-222H17 i...	40	9.3
54	emb\|BX649594.7\| Zebrafish DNA sequence from clone CH211-194N6 in...	40	9.3
55	gb\|AC116555.23\| Mus musculus strain C57BL/6J clone rp23-160b14 m...	40	9.3
56	gb\|AC115976.13\| Mus musculus chromosome 1, clone RP24-82A12, com...	40	9.3
57	dbj\|AB087501.1\| Mus musculus js genes for Jackson shaker and hyp...	40	9.3
58	gb\|AC162949.7\| Mus musculus BAC clone RP23-8D10 from chromosome ...	40	9.3
59	emb\|AL603828.9\| Mouse DNA sequence from clone RP23-117K15 on chr...	40	9.3
60	emb\|AL840627.7\| Zebrafish DNA sequence from clone CH211-278B16 i...	40	9.3
61	gb\|AC151298.3\| Mus musculus BAC clone RP23-7F9 from chromosome 1...	40	9.3
62	gb\|AC168046.7\| Mus musculus chromosome 8, clone RP24-335A7, comp...	40	9.3
63	dbj\|AP003117.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.3
64	dbj\|AP003115.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.3

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Minus

                                                                            
Query: 223      tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 282
                ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10937271 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 10937212

                                                                            
Query: 283      gaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaatgtcaa 342
                ||||||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 10937211 gaacttcttgatcacaagggccataatagcaagagtgagtccaaatgcagccaaggtcaa 10937152

                                                                
Query: 343      caatctgtcgtgctttggcttctggattgtcaagacaggattctgtgg 390
                 |||||||| |||||||||||||||||||  |  ||||||||||||||
Sbjct: 10937151 taatctgtcatgctttggcttctggattgcaacaacaggattctgtgg 10937104



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 606      ttgtcagcagttgtggaacaagtggagctttactgagcatttgctcatggatct 659
                |||||||||| || |||||| | |||||  ||||||||||||||||||||||||
Sbjct: 10936861 ttgtcagcagctgaggaacagggggagccctactgagcatttgctcatggatct 10936808



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 446      acaatgttttctgcaacttctgactctgaatcaggctttggaaggtcagtatta 499
                ||||||| || | ||| ||||||||| ||||||||| ||||||||||| |||||
Sbjct: 10937024 acaatgtgttgtacaatttctgactcagaatcaggccttggaaggtcattatta 10936971

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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Plus

                                                                         
Query: 223   tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 282
             ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 43758 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 43817

                                                                         
Query: 283   gaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaatgtcaa 342
             ||||||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 43818 gaacttcttgatcacaagggccataatagcaagagtgagtccaaatgcagccaaggtcaa 43877

                                                             
Query: 343   caatctgtcgtgctttggcttctggattgtcaagacaggattctgtgg 390
              |||||||| |||||||||||||||||||  |  ||||||||||||||
Sbjct: 43878 taatctgtcatgctttggcttctggattgcaacaacaggattctgtgg 43925



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 606   ttgtcagcagttgtggaacaagtggagctttactgagcatttgctcatggatct 659
             |||||||||| || |||||| | |||||  ||||||||||||||||||||||||
Sbjct: 44168 ttgtcagcagctgaggaacagggggagccctactgagcatttgctcatggatct 44221



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 446   acaatgttttctgcaacttctgactctgaatcaggctttggaaggtcagtatta 499
             ||||||| || | ||| ||||||||| ||||||||| ||||||||||| |||||
Sbjct: 44005 acaatgtgttgtacaatttctgactcagaatcaggccttggaaggtcattatta 44058

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Minus

                                                                            
Query: 223      tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 282
                ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 10935372 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 10935313

                                                                            
Query: 283      gaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaatgtcaa 342
                ||||||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 10935312 gaacttcttgatcacaagggccataatagcaagagtgagtccaaatgcagccaaggtcaa 10935253

                                                                
Query: 343      caatctgtcgtgctttggcttctggattgtcaagacaggattctgtgg 390
                 |||||||| |||||||||||||||||||  |  ||||||||||||||
Sbjct: 10935252 taatctgtcatgctttggcttctggattgcaacaacaggattctgtgg 10935205



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 606      ttgtcagcagttgtggaacaagtggagctttactgagcatttgctcatggatct 659
                |||||||||| || |||||| | |||||  ||||||||||||||||||||||||
Sbjct: 10934962 ttgtcagcagctgaggaacagggggagccctactgagcatttgctcatggatct 10934909



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 446      acaatgttttctgcaacttctgactctgaatcaggctttggaaggtcagtatta 499
                ||||||| || | ||| ||||||||| ||||||||| ||||||||||| |||||
Sbjct: 10935125 acaatgtgttgtacaatttctgactcagaatcaggccttggaaggtcattatta 10935072

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>dbj|AK100355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083I20, full
            insert sequence
          Length = 1369

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Minus

                                                                        
Query: 223  tatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgattttgaa 282
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1065 tatgcacaaacctacctaaaacttgccctcaatgtaaccggccagaccattgattttgaa 1006

                                                                        
Query: 283  gaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaatgtcaa 342
            ||||||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct: 1005 gaacttcttgatcacaagggccataatagcaagagtgagtccaaatgcagccaaggtcaa 946

                                                            
Query: 343  caatctgtcgtgctttggcttctggattgtcaagacaggattctgtgg 390
             |||||||| |||||||||||||||||||  |  ||||||||||||||
Sbjct: 945  taatctgtcatgctttggcttctggattgcaacaacaggattctgtgg 898



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 606 ttgtcagcagttgtggaacaagtggagctttactgagcatttgctcatggatctcatcaa 665
           |||||||||| || |||||| | |||||  ||||||||||||||||||||||||||||||
Sbjct: 655 ttgtcagcagctgaggaacagggggagccctactgagcatttgctcatggatctcatcaa 596

               
Query: 666 ttac 669
           ||||
Sbjct: 595 ttac 592



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 446 acaatgttttctgcaacttctgactctgaatcaggctttggaaggtcagtatta 499
           ||||||| || | ||| ||||||||| ||||||||| ||||||||||| |||||
Sbjct: 818 acaatgtgttgtacaatttctgactcagaatcaggccttggaaggtcattatta 765

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>gb|BT024017.1| Zea mays clone EL01N0401A06 mRNA sequence
          Length = 1152

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                       
Query: 281 aagaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaatgtc 340
           ||||| ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 932 aagaatttcttgatcacaagtgccataatagcaagagtcagcccaaatgcggccaaggtc 873

                                        
Query: 341 aacaatctgtcgtgctttggcttctggat 369
           ||||  ||||| || ||||||||||||||
Sbjct: 872 aacagcctgtcatgatttggcttctggat 844



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 629 ggagctttactgagcatttgctcatggatctcatcaatta 668
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 557 ggagccttactgagcatttgctcatggatctcatcaatta 518

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>gb|AY111561.1| Zea mays CL1285_-2 mRNA sequence
          Length = 550

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 123/150 (82%), Gaps = 1/150 (0%)
 Strand = Plus / Minus

                                                                       
Query: 218 caacttatgcacaaacctacctaaaacttgccctcaatgtaaccagccagaccgttgatt 277
           |||||||||||||| |||||  | ||||||||||||||| ||||  |||  || ||||  
Sbjct: 172 caacttatgcacaatcctactcagaacttgccctcaatgaaaccgcccaagccattgann 113

                                                                       
Query: 278 ttgaagaacttctttatcacgagggccatgatagcaagagtcagcccaaatgcagccaat 337
              |||| |||||| ||||| || ||||| ||||||||||||| ||||||||| ||||| 
Sbjct: 112 nnnaaga-cttcttgatcactagtgccataatagcaagagtcaacccaaatgcggccaag 54

                                         
Query: 338 gtcaacaatctgtcgtgctttggcttctgg 367
           ||||| |  ||||| |||||||||||||||
Sbjct: 53  gtcaatagcctgtcatgctttggcttctgg 24

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>emb|AL391427.9| Human DNA sequence from clone RP11-499O7 on chromosome 10 Contains the 5'
              end of the AKR1C2 gene for aldo-keto reductase family 1
              member C2, a novel gene, the AKR1C3 gene for aldo-keto
              reductase family 1 member C3, two aldo-keto reductase
              pseudogenes and the 3' end of the gene for a novel protein
              similar to aldo-keto reductase, complete sequence
          Length = 166974

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 151    tttatataggatatagtaagcat 173
              |||||||||||||||||||||||
Sbjct: 154959 tttatataggatatagtaagcat 154981

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>gb|AF516145.1| Lyngbya majuscula barbamide biosynthesis gene cluster, complete
             sequence
          Length = 40156

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 549   catcatgttcatcaaaagtgtca 571
             |||||||||||||||||||||||
Sbjct: 12812 catcatgttcatcaaaagtgtca 12790

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>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 13    cacacacgcacacatataatga 34
             ||||||||||||||||||||||
Sbjct: 24314 cacacacgcacacatataatga 24293

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>gb|AC139156.3| Mus musculus BAC clone RP24-115J20 from chromosome 18, complete sequence
          Length = 175062

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 13     cacacacgcacacatataatgaaat 37
              ||||||| |||||||||||||||||
Sbjct: 119666 cacacacacacacatataatgaaat 119690

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>gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosome 18, complete
             sequence
          Length = 130790

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 13    cacacacgcacacatataatgaaat 37
             ||||||| |||||||||||||||||
Sbjct: 79156 cacacacacacacatataatgaaat 79132

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>emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, complete sequence
          Length = 179531

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    atgaaatatcatgtattccat 51
             |||||||||||||||||||||
Sbjct: 31449 atgaaatatcatgtattccat 31429

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>emb|AL158015.9| Human DNA sequence from clone RP11-195N11 on chromosome 20 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 106123

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 458    gcaacttctgactctgaatca 478
              |||||||||||||||||||||
Sbjct: 100523 gcaacttctgactctgaatca 100503

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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
              complete sequence
          Length = 131922

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 638    ctgagcatttgctcatggatc 658
              |||||||||||||||||||||
Sbjct: 121662 ctgagcatttgctcatggatc 121642

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>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence
          Length = 216523

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 13     cacacacgcacacatataatgaaatatca 41
              ||||||| |||||||| ||||||||||||
Sbjct: 139189 cacacacacacacatacaatgaaatatca 139161

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>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1341F06, from chromosome 10, complete
             sequence
          Length = 102520

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 638   ctgagcatttgctcatggatc 658
             |||||||||||||||||||||
Sbjct: 52781 ctgagcatttgctcatggatc 52801

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>gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
            OSJNBa0091J06 from chromosome 10, complete sequence
          Length = 141911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 638  ctgagcatttgctcatggatc 658
            |||||||||||||||||||||
Sbjct: 6745 ctgagcatttgctcatggatc 6725

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>gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G24 map 15q21.3, complete
             sequence
          Length = 174672

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    acacatataatgaaatatcat 42
             |||||||||||||||||||||
Sbjct: 68624 acacatataatgaaatatcat 68604

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 638      ctgagcatttgctcatggatc 658
                |||||||||||||||||||||
Sbjct: 11313674 ctgagcatttgctcatggatc 11313654

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>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence
          Length = 179597

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   ttttgaagaacttctttatca 296
             |||||||||||||||||||||
Sbjct: 78483 ttttgaagaacttctttatca 78503

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>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20,
              complete sequence
          Length = 157156

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 228    acaaacctacctaaaacttgc 248
              |||||||||||||||||||||
Sbjct: 140839 acaaacctacctaaaacttgc 140819

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 638      ctgagcatttgctcatggatc 658
                |||||||||||||||||||||
Sbjct: 11320114 ctgagcatttgctcatggatc 11320094

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>ref|XM_632320.1| Dictyostelium discoideum hypothetical protein (DDB0220649), partial
           mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  tctcactttcaacttcatct 109
           ||||||||||||||||||||
Sbjct: 784 tctcactttcaacttcatct 765

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>gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete sequence
          Length = 180427

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 609   tcagcagttgtggaacaagtggag 632
             ||||||||||||||| ||||||||
Sbjct: 27145 tcagcagttgtggaagaagtggag 27168

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>gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosome 8, complete sequence
          Length = 182604

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cacacacgcacacatataat 32
             ||||||||||||||||||||
Sbjct: 64070 cacacacgcacacatataat 64051

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>gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome 17, complete sequence
          Length = 130975

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cacacacgcacacatataat 32
             ||||||||||||||||||||
Sbjct: 72276 cacacacgcacacatataat 72295

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>gb|AC100539.12| Mus musculus chromosome 1, clone RP23-152E3, complete sequence
          Length = 225993

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    cacacacgcacacatataatgaaa 36
             ||||||| ||||||||||||||||
Sbjct: 78472 cacacacacacacatataatgaaa 78495

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>gb|AC115797.16| Mus musculus chromosome 17, clone RP23-405J10, complete sequence
          Length = 193909

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 450    tgttttctgcaacttctgactctg 473
              ||||||||||| ||||||||||||
Sbjct: 181086 tgttttctgcatcttctgactctg 181109

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>gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, complete sequence
          Length = 162911

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 438   gagctcccacaatgttttctgcaa 461
             ||||| ||||||||||||||||||
Sbjct: 27433 gagcttccacaatgttttctgcaa 27410

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>gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, complete sequence
          Length = 180530

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   cagagctggagccagaagtg 529
             ||||||||||||||||||||
Sbjct: 73049 cagagctggagccagaagtg 73030

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>gb|AC161243.2| Mus musculus BAC clone RP24-241A8 from chromosome 12, complete sequence
          Length = 185031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   agaaccagagctggagccag 524
             ||||||||||||||||||||
Sbjct: 73792 agaaccagagctggagccag 73811

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>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 91827

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 465   ctgactctgaatcaggctttggaa 488
             ||||||||| ||||||||||||||
Sbjct: 34003 ctgactctgcatcaggctttggaa 34026

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>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
              unprocessed pseudogene similar to regulator of G-protein
              signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tataatgaaatatcatgtat 46
              ||||||||||||||||||||
Sbjct: 101081 tataatgaaatatcatgtat 101100

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>emb|AL355596.21| Human DNA sequence from clone RP11-63E9 on chromosome 6, complete
             sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    cacacacgcacacatataatgaaa 36
             ||||||| ||||||||||||||||
Sbjct: 46899 cacacacacacacatataatgaaa 46876

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>emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chromosome 13, complete
             sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    acacgcacacatataatgaaatat 39
             |||| |||||||||||||||||||
Sbjct: 74924 acacacacacatataatgaaatat 74901

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>emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 68631

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    acatataatgaaatatcatg 43
             ||||||||||||||||||||
Sbjct: 63430 acatataatgaaatatcatg 63449

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>gb|AY129950.1| Homo sapiens cAMP-specific phosphodiesterase 8B (PDE8B) gene,
             alternatively spliced, complete cds
          Length = 216589

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   atcatgttcatcaaaagtgt 569
             ||||||||||||||||||||
Sbjct: 28826 atcatgttcatcaaaagtgt 28807

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>emb|BX323793.10| Zebrafish DNA sequence from clone DKEY-185P18 in linkage group 16,
             complete sequence
          Length = 170199

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tctgaatcaggctttggaag 489
             ||||||||||||||||||||
Sbjct: 33982 tctgaatcaggctttggaag 33963

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>emb|AL845307.29| Zebrafish DNA sequence from clone DKEY-56N17 in linkage group 13,
             complete sequence
          Length = 135795

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   atgttcatcaaaagtgtcaggtga 576
             |||||||| |||||||||||||||
Sbjct: 35967 atgttcattaaaagtgtcaggtga 35990

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>gb|AC092948.6| Homo sapiens 3 BAC RP11-536F13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144578

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cacacatataatgaaatatc 40
             ||||||||||||||||||||
Sbjct: 48630 cacacatataatgaaatatc 48611

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>gb|AC105345.3| Homo sapiens BAC clone RP11-689P11 from 4, complete sequence
          Length = 196902

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 543    ccttgacatcatgttcatcaaaag 566
              |||||| |||||||||||||||||
Sbjct: 104460 ccttgaaatcatgttcatcaaaag 104437

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>emb|BX537326.9| Zebrafish DNA sequence from clone DKEY-4I23 in linkage group 2, complete
              sequence
          Length = 237869

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    cagttgtggaacaagtggag 632
              ||||||||||||||||||||
Sbjct: 210524 cagttgtggaacaagtggag 210543

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>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence
          Length = 183486

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     cacacacgcacacatataat 32
              ||||||||||||||||||||
Sbjct: 133951 cacacacgcacacatataat 133932

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>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence
          Length = 207840

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   tggggtttatataggatata 165
             ||||||||||||||||||||
Sbjct: 66690 tggggtttatataggatata 66671

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>ref|XM_694478.1| PREDICTED: Danio rerio similar to LOC446284 protein (LOC570942),
           mRNA
          Length = 3671

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 gctttggcttctggattgtcaaga 377
           |||||| |||||||||||||||||
Sbjct: 178 gctttgacttctggattgtcaaga 201

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>gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, complete sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cacacacgcacacatataat 32
             ||||||||||||||||||||
Sbjct: 10542 cacacacgcacacatataat 10523

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>ref|XM_689281.1| PREDICTED: Danio rerio similar to tubby like protein 4 (LOC566016),
            mRNA
          Length = 5023

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 47   tccatcaagtgctacatacagtag 70
            ||||||||||||| ||||||||||
Sbjct: 3687 tccatcaagtgctgcatacagtag 3710

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>tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) gene, complete cds
          Length = 53301

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  cagaaccagagctggagcca 523
            ||||||||||||||||||||
Sbjct: 1260 cagaaccagagctggagcca 1279

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>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence
          Length = 183408

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    cacacacgcacacatataatgaaa 36
             ||||||| ||||||||||||||||
Sbjct: 46868 cacacacacacacatataatgaaa 46845

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>gb|AC116643.11| Homo sapiens BAC clone RP11-637J21 from 4, complete sequence
          Length = 214284

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   ccttgacatcatgttcatcaaaag 566
             |||||| |||||||||||||||||
Sbjct: 41502 ccttgaaatcatgttcatcaaaag 41479

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>gb|AC022414.8| Homo sapiens chromosome 5 clone CTC-316M18, complete sequence
          Length = 128811

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   atcatgttcatcaaaagtgt 569
             ||||||||||||||||||||
Sbjct: 60266 atcatgttcatcaaaagtgt 60285

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>gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, complete sequence
          Length = 228068

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 530    ttgacacctgctgccttgacatca 553
              ||||| ||||||||||||||||||
Sbjct: 130694 ttgactcctgctgccttgacatca 130671

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>emb|BX890562.8| Zebrafish DNA sequence from clone CH211-222H17 in linkage group 4,
             complete sequence
          Length = 195554

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    tccatcaagtgctacatacagtag 70
             ||||||||||||| ||||||||||
Sbjct: 49604 tccatcaagtgctgcatacagtag 49627

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>emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in linkage group 18,
              complete sequence
          Length = 195263

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     cacacacgcacacatataatgaaa 36
              ||||||||||| ||||||||||||
Sbjct: 105586 cacacacgcactcatataatgaaa 105563

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>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   ttctgcaacttctgactctg 473
             ||||||||||||||||||||
Sbjct: 33908 ttctgcaacttctgactctg 33927

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>gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, complete sequence
          Length = 222238

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 13  cacacacgcacacatataatgaaa 36
           ||||||| ||||||||||||||||
Sbjct: 225 cacacacacacacatataatgaaa 202

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>dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hypothetical protein,
             complete and partial cds
          Length = 72195

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   cagaaccagagctggagcca 523
             ||||||||||||||||||||
Sbjct: 30558 cagaaccagagctggagcca 30577

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>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence
          Length = 228830

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    ttctgcaacttctgactctg 473
              ||||||||||||||||||||
Sbjct: 106185 ttctgcaacttctgactctg 106204

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>emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chromosome 11, complete
              sequence
          Length = 210982

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    cagaaccagagctggagcca 523
              ||||||||||||||||||||
Sbjct: 108482 cagaaccagagctggagcca 108501

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>emb|AL840627.7| Zebrafish DNA sequence from clone CH211-278B16 in linkage group 17,
             complete sequence
          Length = 164375

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tttatataggatatagtaag 170
             ||||||||||||||||||||
Sbjct: 56929 tttatataggatatagtaag 56948

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>gb|AC151298.3| Mus musculus BAC clone RP23-7F9 from chromosome 17, complete sequence
          Length = 198349

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 450    tgttttctgcaacttctgactctg 473
              ||||||||||| ||||||||||||
Sbjct: 150694 tgttttctgcatcttctgactctg 150671

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>gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, complete sequence
          Length = 160659

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     cacacacgcacacatataat 32
              ||||||||||||||||||||
Sbjct: 112266 cacacacgcacacatataat 112285

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>dbj|AP003117.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4
          Length = 152176

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    aacttctgactctgaatcag 479
              ||||||||||||||||||||
Sbjct: 147630 aacttctgactctgaatcag 147649

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>dbj|AP003115.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1000E4
          Length = 115937

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   aacttctgactctgaatcag 479
             ||||||||||||||||||||
Sbjct: 23137 aacttctgactctgaatcag 23156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,260,591
Number of Sequences: 3902068
Number of extensions: 6260591
Number of successful extensions: 180039
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179734
Number of HSP's gapped (non-prelim): 304
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result