ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16k10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1733 Score = 167 bits (84), Expect = 2e-38 Identities = 218/264 (82%) Strand = Plus / Minus Query: 3 cctccgctggcgctcccggggatcaccgcgacgccgtgcttggtcgcgagccatctgaca 62 ||||| |||||||||||||||||||| || || || |||||| | || |||||||||||| Sbjct: 1246 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1187 Query: 63 acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctnc 122 ||||||||||| ||| || || || ||||| || ||||||||||| |||||||||| Sbjct: 1186 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1127 Query: 123 ccacccttgacagcatcctcgccaaggggagacattgcctccacaagcagcttccggttt 182 ||||||||||||| |||| |||||| |||||||| || |||| |||| | |||||| Sbjct: 1126 ccacccttgacagagtccttgccaagcggagacatcgcttccatgagcaattcacggttt 1067 Query: 183 atcacgagatcttgcaccctttccctgatncactctgggccagcctncaatgagtacaga 242 |||| |||||| ||||||||| ||||| || ||||| ||||||| |||| ||| || Sbjct: 1066 ttcactagatctctcaccctttctctgatccattctggaccagcctctaatgcgtagagc 1007 Query: 243 gccaggcgctgcccgntgatggaa 266 ||||||||||||||| |||||||| Sbjct: 1006 gccaggcgctgcccgatgatggaa 983
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 2e-38 Identities = 218/264 (82%) Strand = Plus / Plus Query: 3 cctccgctggcgctcccggggatcaccgcgacgccgtgcttggtcgcgagccatctgaca 62 ||||| |||||||||||||||||||| || || || |||||| | || |||||||||||| Sbjct: 4051372 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 4051431 Query: 63 acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctnc 122 ||||||||||| ||| || || || ||||| || ||||||||||| |||||||||| Sbjct: 4051432 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 4051491 Query: 123 ccacccttgacagcatcctcgccaaggggagacattgcctccacaagcagcttccggttt 182 ||||||||||||| |||| |||||| |||||||| || |||| |||| | |||||| Sbjct: 4051492 ccacccttgacagagtccttgccaagcggagacatcgcttccatgagcaattcacggttt 4051551 Query: 183 atcacgagatcttgcaccctttccctgatncactctgggccagcctncaatgagtacaga 242 |||| |||||| ||||||||| ||||| || ||||| ||||||| |||| ||| || Sbjct: 4051552 ttcactagatctctcaccctttctctgatccattctggaccagcctctaatgcgtagagc 4051611 Query: 243 gccaggcgctgcccgntgatggaa 266 ||||||||||||||| |||||||| Sbjct: 4051612 gccaggcgctgcccgatgatggaa 4051635
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 167 bits (84), Expect = 2e-38 Identities = 218/264 (82%) Strand = Plus / Plus Query: 3 cctccgctggcgctcccggggatcaccgcgacgccgtgcttggtcgcgagccatctgaca 62 ||||| |||||||||||||||||||| || || || |||||| | || |||||||||||| Sbjct: 18115 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 18174 Query: 63 acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctnc 122 ||||||||||| ||| || || || ||||| || ||||||||||| |||||||||| Sbjct: 18175 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 18234 Query: 123 ccacccttgacagcatcctcgccaaggggagacattgcctccacaagcagcttccggttt 182 ||||||||||||| |||| |||||| |||||||| || |||| |||| | |||||| Sbjct: 18235 ccacccttgacagagtccttgccaagcggagacatcgcttccatgagcaattcacggttt 18294 Query: 183 atcacgagatcttgcaccctttccctgatncactctgggccagcctncaatgagtacaga 242 |||| |||||| ||||||||| ||||| || ||||| ||||||| |||| ||| || Sbjct: 18295 ttcactagatctctcaccctttctctgatccattctggaccagcctctaatgcgtagagc 18354 Query: 243 gccaggcgctgcccgntgatggaa 266 ||||||||||||||| |||||||| Sbjct: 18355 gccaggcgctgcccgatgatggaa 18378
>dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full insert sequence Length = 2063 Score = 167 bits (84), Expect = 2e-38 Identities = 218/264 (82%) Strand = Plus / Minus Query: 3 cctccgctggcgctcccggggatcaccgcgacgccgtgcttggtcgcgagccatctgaca 62 ||||| |||||||||||||||||||| || || || |||||| | || |||||||||||| Sbjct: 1589 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1530 Query: 63 acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctnc 122 ||||||||||| ||| || || || ||||| || ||||||||||| |||||||||| Sbjct: 1529 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1470 Query: 123 ccacccttgacagcatcctcgccaaggggagacattgcctccacaagcagcttccggttt 182 ||||||||||||| |||| |||||| |||||||| || |||| |||| | |||||| Sbjct: 1469 ccacccttgacagagtccttgccaagcggagacatcgcttccatgagcaattcacggttt 1410 Query: 183 atcacgagatcttgcaccctttccctgatncactctgggccagcctncaatgagtacaga 242 |||| |||||| ||||||||| ||||| || ||||| ||||||| |||| ||| || Sbjct: 1409 ttcactagatctctcaccctttctctgatccattctggaccagcctctaatgcgtagagc 1350 Query: 243 gccaggcgctgcccgntgatggaa 266 ||||||||||||||| |||||||| Sbjct: 1349 gccaggcgctgcccgatgatggaa 1326
>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full insert sequence Length = 1734 Score = 167 bits (84), Expect = 2e-38 Identities = 218/264 (82%) Strand = Plus / Minus Query: 3 cctccgctggcgctcccggggatcaccgcgacgccgtgcttggtcgcgagccatctgaca 62 ||||| |||||||||||||||||||| || || || |||||| | || |||||||||||| Sbjct: 1247 cctccactggcgctcccggggatcacagccacaccatgcttgtttgcaagccatctgaca 1188 Query: 63 acttcaaaatcgtctttacagttatctggtagcttagcccagaggtagatggcaccctnc 122 ||||||||||| ||| || || || ||||| || ||||||||||| |||||||||| Sbjct: 1187 acttcaaaatcatctgagcatttctcgggtagttttgcccagaggtaaatggcaccctca 1128 Query: 123 ccacccttgacagcatcctcgccaaggggagacattgcctccacaagcagcttccggttt 182 ||||||||||||| |||| |||||| |||||||| || |||| |||| | |||||| Sbjct: 1127 ccacccttgacagagtccttgccaagcggagacatcgcttccatgagcaattcacggttt 1068 Query: 183 atcacgagatcttgcaccctttccctgatncactctgggccagcctncaatgagtacaga 242 |||| |||||| ||||||||| ||||| || ||||| ||||||| |||| ||| || Sbjct: 1067 ttcactagatctctcaccctttctctgatccattctggaccagcctctaatgcgtagagc 1008 Query: 243 gccaggcgctgcccgntgatggaa 266 ||||||||||||||| |||||||| Sbjct: 1007 gccaggcgctgcccgatgatggaa 984
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gatcaccgcgacgccgtgct 42 |||||||||||||||||||| Sbjct: 936038 gatcaccgcgacgccgtgct 936057
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gatcaccgcgacgccgtgct 42 |||||||||||||||||||| Sbjct: 2254760 gatcaccgcgacgccgtgct 2254779
>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete sequence Length = 231347 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aagcagcttccggtttatca 186 |||||||||||||||||||| Sbjct: 171748 aagcagcttccggtttatca 171767
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gatcaccgcgacgccgtgct 42 |||||||||||||||||||| Sbjct: 1802417 gatcaccgcgacgccgtgct 1802436
>gb|AF134841.1|AF134841 Bos taurus ornithine transcarbamylase (OTC) mRNA, complete cds Length = 2132 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 acattgcctccacaagcagcttcc 177 ||||||||||||||||| |||||| Sbjct: 833 acattgcctccacaagctgcttcc 810
>ref|NM_177487.2| Bos taurus ornithine carbamoyltransferase (OTC), mRNA Length = 2132 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 acattgcctccacaagcagcttcc 177 ||||||||||||||||| |||||| Sbjct: 833 acattgcctccacaagctgcttcc 810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,434,773 Number of Sequences: 3902068 Number of extensions: 1434773 Number of successful extensions: 25830 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25738 Number of HSP's gapped (non-prelim): 82 length of query: 266 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 244 effective length of database: 17,147,199,772 effective search space: 4183916744368 effective search space used: 4183916744368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
